Carg20514 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20514
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCarg_Chr12: 37105 .. 42074 (-)
RNA-Seq ExpressionCarg20514
SyntenyCarg20514
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCTTTCTCTGCCTTCGTCTTTGCCTCTGCCACTCGTAAAAGGTGATCTCTAAACCCTAACATTTCAGTTCCGGTTATTCCTATGCCTATCCTTTTTCTGTTTTACACTTCTCTTCATTTCTTAACTTTTATTGGCGTTTAGGTTGCGATTTTCTGCTACCTGTTCGGTTTGCATGGCCTCTTTATGGTTTCCATTTGGGTCATTCAAGTGTGAAATTTTATATGGAGATTGTGACGAGAAACACTCTCTGAACATTAAGTTTGTTGATTTATAGCTGATTTTCGTTTTTCTTCTAGTCCCACATTTGGCCACAGTAGTTTCATTATCTTTCATTTGATTCACGAAAAGTTTTCAAAAATTAAAGTTCTGAACAATTATGTATATCCTTAGATGTAATATTAGTATTTGTGTTTAAGCGATTAATAGCTTAAATGCTCTCAAGCGATTAATGGTGTTGTAATTGGAGTGCCTGCTTGAGGTCTATTTGTTGGTGGGACGAGGGTTTAGAAGATTTGAAGTTAACCAAGAAAATGATATTGACGATAAATTAGAGAACAAACAAGATGTTATTCGAGGAATCTATGCACCAAATGTGGTTGAGCGTGAAAACAGTAATGTTCTGGTTGGAAATTCTAGTTATTAACACTTGTTTATCTTCTTGACCCTGGTTCATTTGATTTAAATCTGACAGAGTTGCTATATTATCTTCAATTTTTGAGACATAAAGTAGAAGATTGCATAATGGAGCAACCATCTGTGAGATCCCATATCGGTTGGAGAGGGGAATGAAACATTCCTTACTAGGGTGTGGAAACCTCTTCCTAGTAGATGCGTTTTAAAACCGTGAAGTTGGCGGCGATACGTAACGATAGACTTTGGCTATTACTAATGGTATCAGAGCCAGACACTGGGTGGTGTGCCAACAAGGACGCTAGGACCCCAAGGAGGGTGGATTGTGAGATTCCGGTTGGACAAGGACGCTAGGACCCCAAGGAGGGTGGATTGTGAGATTTCGGTTGGACAAGGACGCTAGGACCCCAAGGAGGGTGGATTGTGAGATTCCAGTTGGAGAGTGGAACGAAGCATTTCTTGTAAGAGTGTGGAAACCTCTCCCTAGTAGATGCATTTTAAAACCATGAGGTTGACGGTGATGAGTAATGGGCCAAAGTGGACAATTTGCTTTTGGTTAAAATTTAATGTCAACATATTTTACATTTTGCTTTTGGTTGACCTAGTAGTCATATACAGGGTTGGAGAGAGTGGGTTCCTAGGCACCGTACCTGAGATTTATACTATCCTGGTGGTCAATGTGATAGGTTAAGGCAATTATTGTGTTTCTTTGAATGAGAAATTTATTTATTTATCATTTTTTCATGGTTATTTTATCAATCCCAGCCTTTGTCCACCTTGGTGGTTTACTGGTTGTGTGGGCATTTTGTAAAAATTCACAATGTCAATCTATTGTCTAACTGTTTTGTTACTGTTTGTATATTGGCATGATTAGGTATTCGGGGAAATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACAAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGGTAAACTTACAAAAGTATTTGAGCCTGCACCATTTACGTAATTTTATCTTGTATGAAGCATGCCAATTTTCTTCTTTATGCTTACATTCTAAATCCACATGCAACTTAAGAGGTGCTGTGAAGAGTTTTAATAACTGTTCTATATCGTGTGATCTCACTCCCTATCCACAATTACTGTGAAGGGTAAAGGTTGTTTTGATATATATTAACTTCCTGCTAGTAAAGATTTCAAAAAAGGGAGGCTTTCTGTTATCTTAAAAGTTGTCATGGATCTTTCTTTTTCACTGGAAAAAAAACTCATTTTACTGAATACTGGGATATATGGAGGTTGAAATGCAAATCCAACTGAAATAAATCATCCGTACTAAAAGTACCTTTTAAAAATTATAAGTTCATCACTTTGTCAGCTATATATATTGGTCAGTGTAATGGCTCATAGTTGGATAATGACTTGAATAGTTCAATTACATGACGGATGTTGGATAAAGTTAAAACTATACATTAGAAAGGATAAGCTCTACGCTGAATCTTGAGAATAATAGATTTTGAATGAACCTCCTGTGTATTATTTTGATTTTGATCCTATGAGTGAGATTGGTACTGGAAGGTCCATCAGCTGTAGTTAATGTTGTTTCTACAGTGGCTTCTTTTTTTCTATCGACTACATTTTTATTTTTTTGTGTTCGGATCTGATTATGCATTCTATTGAGTGTTAGTTCAGAATACTGTATGTTGTTGGTAATATAAAGTAAGTGTAGATGCTTTAGTGATCAAAAGATCGTAGACTGTTTTATTGTATGAGGGAGTAAGAGAATGAGAACTAATTGTTATCAATATTAAAAGTCATCTAGTTACTGGAACCTACTTGAAGCATTAATTTTGGCTTCTTGTTTTTGGAGGAACTGCCATCACTCAGGAATCCAGGGCCATTTAATAACGTTTTTGTTTCTCATTTCTCATTTCTCGTTCCTATTACTATTTTTTTTAGAAACATGCATTTTTGACAAATGATTTTGTTTCTCGTTTCCAAATCTAAAGAAATGTTTCCTCAAAGTATGAAGAATTTGGGGAATTCCAAAAAGAAGTTTCTGTTTTAATGTTTCTCTTTTCATTTTGGTTGTTCCAGTCTTAAAGCACATCCCAATTCCCAATGCGAAGTGAACGTGTTCACTTGTTAACATATTTGCCTTTTTCTTGCATCTAAAAACTTTTTTTTTAGTTTTAGCAAAGTTTTTGAAGAGAATAATTTTTTTAAAATTTTTTTTAATTAAGACAAACATTTTAATTTTTGAACTTTAAATTTGATTTGGGATTTGAATAGATATTACAAATTTTACATTTTAATTAAAATAATTTTATTTGTATATTTAGCCATTACTTATCATTTTTTACTATATAGTATATTATTTTTACATGATATTACTAAGTTTTAAGGTGAATGGCGAGCGAGAAACGATATTCAAATTTGGACAACAGTTGAAGGATAGATACAACTTTATTGTTGTGCTTCAATTTTGCATTGGGACTTGATTATAATGTAAAGTTTTGATAATTATTTTTATATGTTTTATTGCATGCTGTATGTTTTCTGAATTTCAATTTGAGGTATAACAGAGAAAGAAATTGGAAGCAAGAAATAGTTATCAAACTAGTTTCTTTTTCTGTTTCTTGTTAGGAAGGAGAAATAGGTATGACATACTTTATTGTTGTGTTTGGTTTGATGTTGGACAATTGCAGTTTTTAAAACTCAAGGACACTAATGTACAACCTATAGAATAGATCCCGTTCAAGTAAGGTTGTTTATCAAATACACATAAATTAACAGTGGTTTCAATTATTCACTTACTATTTCGTTTGTAAGTGAATAGTTGAATGGAAAACTGGTTAGTAACACCATATCTTTGTAATTGTGTAGTTGCAATGAAAACTATTCCTCCTGCATGGGCAGATTAAAAAGGTGGACAAGAATGGAATTTTGTGCGAAGTAGGTTCATGATTTGACTAACAGGTGGTGCAGGAACGAGCTAGGATTAAATTTTTTGTAGTGCAAACTCTTATTGTAAAAATATAGCCCTCCGTGATTTGACCTATAGCCTATCTTTGTTCACGAGATTAGTAAATAGGTCATCCAGAATTTACTCCAAGCATTCAGGACAATTTTATAAGTTTACTGTGCCTTGCATTTTTTTTTTTAAAATTCCAACTGACTCCTAAAATTTAATCTGGTTTAATTAACCAGCCCTTTATGTATATTTTATCTTAATTTTGAATGTCCATGTAGCCACTGTTCAATTTATTGACTTGAACTAATATTTCTTTTGGCATTTAATAAATGGAATTGAAGTTTCCGTAACTCATTTACTCGTAATTCTTTGCTTTCTTCTGTGTAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGAATTTTGTGATCGCGTTCACTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATTACAAGTTTCCTTTGGGGTACTGAAAATGCTCACCGAGTTCATTATTAGGAAATAGAATTCTGGAAGCCAGTTGTACGAAAGTTGATTTTCATCCACGCAGCTTATTGTTAGAACCGTTGTTGGGATTTACAAACAGGTGGGTAATGGCTGCAGTTGATGGAAGAAGGCTTAGCCGGCTTTTTTTACTTTTCATTTGGCAAGTATTTTATTGGCTGTGACACAGTTTTATGATGTTGAAATTATCATAAGATGATGACAAGAGTAGCGCCTTGCGTGGTTTTAAATTATGTTTTTTTTATTAGTCAAGGTTCATGCCAACTGAACTGCTTTTGAACTCAAATCCAATGCTTGAATGATTGATTGATTACCCTTCATGTGTGAGGATTTCACGAGTAAATATCAGTCTCCGGTTTTAGGTTGCCTTTGTTTGTGTATGTGTTGTATGATGTGCTTCAGCAGGTCTTATGTTGTGTGATAAGATCTTAGGATCAAGTTGGTATCCTAAATTGTACATTTCACACAGAAAAGAGAGGGGTAATAAGGAAAGC

mRNA sequence

TTTGACGGCTACGTTTCTCAAATCAGATCGGCTTCCTTTCTCTGCCTTCGTCTTTGCCTCTGCCACTCGTAAAAGGTATTCGGGGAAATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACAAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGAATTTTGTGATCGCGTTCACTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATTACAAGTTTCCTTTGGGGTACTGAAAATGCTCACCGAGTTCATTATTAGGAAATAGAATTCTGGAAGCCAGTTGTACGAAAGTTGATTTTCATCCACGCAGCTTATTGTTAGAACCGTTGTTGGGATTTACAAACAGGTGGGTAATGGCTGCAGTTGATGGAAGAAGGCTTAGCCGGCTTTTTTTACTTTTCATTTGGCAAGTATTTTATTGGCTGTGACACAGTTTTATGATGTTGAAATTATCATAAGATGATGACAAGAGTAGCGCCTTGCGTGGTTTTAAATTATGTTTTTTTTATTAGTCAAGGTTCATGCCAACTGAACTGCTTTTGAACTCAAATCCAATGCTTGAATGATTGATTGATTACCCTTCATGTGTGAGGATTTCACGAGTAAATATCAGTCTCCGGTTTTAGGTTGCCTTTGTTTGTGTATGTGTTGTATGATGTGCTTCAGCAGGTCTTATGTTGTGTGATAAGATCTTAGGATCAAGTTGGTATCCTAAATTGTACATTTCACACAGAAAAGAGAGGGGTAATAAGGAAAGC

Coding sequence (CDS)

ATGGCAGAATCCAAACCTGGACTGAGGAAACCAGTATTTACCAAGGTTGATCAACTTCGGCCAGGCACTAGTGGGCATACTCTTACTGTTAAGGTTGTGAATACAAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTAGGTGATGAAACTGGAATGATCATATTTACCGCCAGAAATGATCAAGTCGACTTGATGAAAGAAGGTGCCACTATAATCCTGCGCAATGCTAAGATAGACATGTTCAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGTGTTGAAGTTACTGAGCCTGCAAGTTTTACTGTTAAGGAAGAGAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTGGTGGAAGAGTGA

Protein sequence

MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLIEYELVNVVEE
Homology
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BLAST of Carg20514 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7020076.1 hypothetical protein SDJN02_16758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.6 bits (693), Expect = 3.8e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           ENNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

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BLAST of Carg20514 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. NCBI nr
Match: XP_004142984.1 (uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 uncharacterized protein At4g28440 [Cucumis sativus] >KAA0061088.1 Nucleic acid-binding protein [Cucumis melo var. makuwa] >KGN62287.1 hypothetical protein Csa_018609 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. NCBI nr
Match: XP_038883981.1 (uncharacterized protein At4g28440 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 9.4e-68
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTK+DQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKIDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPATFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 132/137 (96.35%), Postives = 134/137 (97.81%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

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BLAST of Carg20514 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 89/132 (67.42%), Postives = 108/132 (81.82%), Query Frame = 0 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEEN 128
           TG I+FTARNDQVDLMK GAT+ILRN++IDMFKG+MRL VD+WGR+E T  ASFTVKE+N
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 129 NLSLIEYELVNV 135
           NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match: A0A6J1KS21 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111495976 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           ENNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match: A0A6J1GH14 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111454116 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           ENNLSLIEYELVNVVEE
Sbjct: 121 ENNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match: A0A6J1BQ40 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111004728 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match: A0A1S3BA24 (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match: A0A5A7V0K6 (Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002290 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKE 120
           DETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRLAVDRWGRVEVTEPA+FTVKE
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKE 120

Query: 121 ENNLSLIEYELVNVVEE 138
           +NNLSLIEYELVNVVEE
Sbjct: 121 DNNLSLIEYELVNVVEE 137

[Close]
BLAST of Carg20514 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 230.3 bits (586), Expect = 9.1e-61
Identity = 112/137 (81.75%), Postives = 128/137 (93.43%), Query Frame = 0 

Query: 1   MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLV 60
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61  GDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVK 120
           GDETG+I+FTARNDQVDLMKEG+T+ LRNAKIDM+KGSMRLAVD+WGRVEVTEPASF VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 121 EENNLSLIEYELVNVVE 137
           E+ N+SLIEYELVNVVE
Sbjct: 121 EDTNMSLIEYELVNVVE 137

[Close]
BLAST of Carg20514 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 107/137 (78.10%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 120
           VGDETG+IIFTARNDQVD+MKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 121 VKEENNLSLIEYELVNV 135
           VK++NNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]
BLAST of Carg20514 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 107/137 (78.10%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 120
           VGDETG+IIFTARNDQVD+MKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 75  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 134

Query: 121 VKEENNLSLIEYELVNV 135
           VK++NNLSLIEYELV+V
Sbjct: 135 VKDDNNLSLIEYELVSV 151

[Close]
BLAST of Carg20514 vs. TAIR 10
Match: AT1G10590.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 107/137 (78.10%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVT-EPASFT 120
           VGDETG+IIFTARNDQVD+MKEG+ + LRNAKIDM+KGSMRLAVDRWGRVEV  EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 121 VKEENNLSLIEYELVNV 135
           VK++NNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]
BLAST of Carg20514 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-49
Identity = 97/130 (74.62%), Postives = 108/130 (83.08%), Query Frame = 0 

Query: 9   RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMII 68
           +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 69  FTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVEVTEPASFTVKEENNLSLI 128
           FTARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA  TVKE+NNLSL+
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLV 172

Query: 129 EYELVNVVEE 138
           EYELVNVVEE
Sbjct: 173 EYELVNVVEE 182

The following BLAST results are available for this feature:
BLAST of Carg20514 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951207.13.8e-69100.00uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch... [more]
XP_022131585.14.2e-6897.81uncharacterized protein At4g28440-like [Momordica charantia][more]
XP_004142984.17.2e-6897.81uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: u... [more]
XP_038883981.19.4e-6897.08uncharacterized protein At4g28440 [Benincasa hispida][more]
XP_022961781.11.4e-6696.35uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch... [more]
BLAST of Carg20514 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O494532.0e-4467.42Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P... [more]
BLAST of Carg20514 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KS211.9e-69100.00uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114959... [more]
A0A6J1GH141.9e-69100.00uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1BQ402.1e-6897.81uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A1S3BA243.5e-6897.81uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A5A7V0K63.5e-6897.81Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
BLAST of Carg20514 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G23750.19.1e-6181.75Nucleic acid-binding, OB-fold-like protein [more]
AT1G10590.11.5e-5578.10Nucleic acid-binding, OB-fold-like protein [more]
AT1G10590.31.5e-5578.10Nucleic acid-binding, OB-fold-like protein [more]
AT1G10590.21.5e-5578.10Nucleic acid-binding, OB-fold-like protein [more]
AT2G33845.12.8e-4974.62Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 23..126
e-value: 8.6E-44
score: 150.0
NoneNo IPR availablePANTHERPTHR31472OS05G0244600 PROTEINcoord: 1..136
NoneNo IPR availablePANTHERPTHR31472:SF28BNAA07G09820D PROTEINcoord: 1..136
NoneNo IPR availableCDDcd04491SoSSB_OBFcoord: 27..110
e-value: 4.53168E-17
score: 68.8037
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20514-RACarg20514-RAmRNA