Carg20456 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20456
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein kish
Location	Carg_Chr12: 268978 .. 270903 (+)
RNA-Seq Expression	Carg20456
Synteny	Carg20456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTACATTAAAAATATTTGGAAAGACTTTAAAAAACCCCTCGCACCAAGTATTCATTTGGTAACTGTAAAAAGTATTAAAGTTCCTATAAAGCAATGGCCGATTCGCTGGAACTCGTCTGAACTGCGGAATCCTTCGTCATTTCATTCACAACCGGAGGAAAAATCTCACTCAGAAGCGCTTGTGCTCGCCGCTGTTCAAACCTTTGGCTGTTGGGAGGTCAACAAGTTCCTTTCCTCCCGTTCATTCGTTACCGAAGGACTACGATCTGAGAATCTCTGCGGCTTGTATCAGACCCGCTGTTTCTTTTCTTCATAGCAATTTCTGTACTTTCTGTAAGTACTCTGTGATTTGTTTGAATTTGTGTTTTCAATGTTATTGGATTCGCCGTTGAAGATTTAGTTGGATTTAGGTTTTTAGATTAATGGGTTCGAACAAATTGTTTCTTGGACATCGAGAGATTTGGATCTTTGTTGGAGAAAGTTAATGTTTTAACATTGTTACCCATTCCCGATTCGTAAACTGAATTCGAGGTTTACTCCTTCAGCTTTCAATATCTATGAGGAACTACATTTCGTAACAGTTTCTGCACGGAGATTGTTTAGTTTAGCTTTGTGGTGCCCAAAATCTTAATGGAACTTCAAAATGGTGTATGACTTTTGTAAAAATCGAAGAGCCTAATTTATTTACTGTGAAGTTTTCAAATTATCCGGAGAGTTTGTCGTCAATCATGAATGATATGGATGTGTGTATTGAACTTCATTTCAGTCCGTTCCTAACTTATTTTATCCTATTTCTAGGTTGAATTGAATAGTGAAGATTGTTAGCGTGATTAATACCTGGCATTTTGAAAATGGTAAAGGACCCTGGCCTTTGGTGTGTGGACTATGAAAATAGTCATAGCTTGGATAAATAGGAGCTATTAATCGCTGACATGGTCGATGTTTGTTTTTCAGTCGGCTTTGTTCAATTTTCATTCGTTTCTGACAGTAATCCTACTGGGAATTTGTACCTGTACCTATATGAAGATGCAGTTTCCTGCTATTCTTGAACAGAGAAATGGGTAATTTTTTCATTTCTGTTATGCTGTATACTGCATTGAGATAAATATAGATAATCAGGTTTCGAGCATGTTGCCTAATTGTTTTGAGTTTTCATTTCATGTTGCTACTTTCTTTTCCTTCTCTCAAACATAATTGGAATTAATTTGATGCTTGGAGAGACCCCCATTCTTTCCTTACCTCGTGAAATTGAATTTCCTCTACATATGTTAGGTGTTGATTGATTTATTATCATGGTGGTGCTATTGATCACCGATATTGATGTTCTTGGTGTGCGAAATCACTACCTCTTATGTTCGAAATACGATTACATTATAAATTCCATATCGTTTTTAATCGAGTTGCTCATCTGACAGGTTCCGTGGCTTCTTTTGGAAAGCAGCTAGAATAGGTAGGATTCTTGGTTAAATTTGCACAATTGCTCTATTGCATGAAAATATTTTTCTGGAACAATTTATACATAAACTGTATAACATCTGAACTCTTTCTTTTTTCTTCTCTCTTTGGTTCTTCCAGCATTCGCCTCTCTTAATGAGACTGAATTTCTGATGTATTGCACCCAAAAAAAAGTATTTAGCTTCTTTATTATTAAAAAAAACTCAGTAGCTTTTCGGCCTTTTAGATTTCTCTTGTTCATATACGAATTTATATACACAATCATGCAACGAGGGACATGGGAGAAAGAAACAAAGTCTAAGTTACACCTATTTCAATCAGTAGGGCATAGATTTTGTTGTCATTTGGCAAGTATAACAGTCATTATTATCTGACGGGTTGATGTTCTGTTTGTGAATCAGGTGAACGTTTGAGTCCTTGGGTAGCTGTGGGGTGCTTCTCAATGGGAGTCTCAATAATATTCTTCTGA

mRNA sequence

AATTACATTAAAAATATTTGGAAAGACTTTAAAAAACCCCTCGCACCAAGTATTCATTTGGTAACTGTAAAAAGTATTAAAGTTCCTATAAAGCAATGGCCGATTCGCTGGAACTCGTCTGAACTGCGGAATCCTTCGTCATTTCATTCACAACCGGAGGAAAAATCTCACTCAGAAGCGCTTGTGCTCGCCGCTGTTCAAACCTTTGGCTGTTGGGAGGTCAACAAGTTCCTTTCCTCCCGTTCATTCGTTACCGAAGGACTACGATCTGAGAATCTCTGCGGCTTGTATCAGACCCGCTGTTTCTTTTCTTCATAGCAATTTCTGTACTTTCTGTTGAATTGAATAGTGAAGATTGTTAGCGTGATTAATACCTGGCATTTTGAAAATGGTAAAGGACCCTGGCCTTTGGTGTGTGGACTATGAAAATAGTCATAGCTTGGATAAATAGGAGCTATTAATCGCTGACATGGTCGATGTTTGTTTTTCAGTCGGCTTTGTTCAATTTTCATTCGTTTCTGACAGTAATCCTACTGGGAATTTGTACCTGTACCTATATGAAGATGCAGTTTCCTGCTATTCTTGAACAGAGAAATGGGTTCCGTGGCTTCTTTTGGAAAGCAGCTAGAATAGGTGAACGTTTGAGTCCTTGGGTAGCTGTGGGGTGCTTCTCAATGGGAGTCTCAATAATATTCTTCTGA

Coding sequence (CDS)

ATGTTTGTTTTTCAGTCGGCTTTGTTCAATTTTCATTCGTTTCTGACAGTAATCCTACTGGGAATTTGTACCTGTACCTATATGAAGATGCAGTTTCCTGCTATTCTTGAACAGAGAAATGGGTTCCGTGGCTTCTTTTGGAAAGCAGCTAGAATAGGTGAACGTTTGAGTCCTTGGGTAGCTGTGGGGTGCTTCTCAATGGGAGTCTCAATAATATTCTTCTGA

Protein sequence

MFVFQSALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCFSMGVSIIFF

Homology

[Close]

BLAST of Carg20456 vs. NCBI nr
Match: KAG7020134.1 (Protein kish-A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 4.8e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MFVFQSALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWV 60
          MFVFQSALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWV
Sbjct: 1  MFVFQSALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWV 60

Query: 61 AVGCFSMGVSIIFF 75
          AVGCFSMGVSIIFF
Sbjct: 61 AVGCFSMGVSIIFF 74

[Close]

BLAST of Carg20456 vs. NCBI nr
Match: XP_022951814.1 (protein kish-like [Cucurbita moschata] >KAG6585214.1 Protein kish-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. NCBI nr
Match: XP_023002171.1 (protein kish-like [Cucurbita maxima] >XP_023536957.1 protein kish-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 6.5e-31
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. NCBI nr
Match: XP_004144193.1 (protein kish [Cucumis sativus] >XP_008445493.1 PREDICTED: protein kish isoform X3 [Cucumis melo] >XP_022131327.1 protein kish [Momordica charantia] >XP_022961720.1 protein kish-like [Cucurbita moschata] >XP_022961721.1 protein kish-like [Cucurbita moschata] >XP_023545685.1 protein kish-like [Cucurbita pepo subsp. pepo] >XP_023545686.1 protein kish-like [Cucurbita pepo subsp. pepo] >XP_038884397.1 protein kish [Benincasa hispida] >KAG6598616.1 Protein kish-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KM FPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMHFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. NCBI nr
Match: XP_012479171.1 (PREDICTED: protein kish isoform X1 [Gossypium raimondii] >XP_016665910.1 protein kish [Gossypium hirsutum] >XP_017618779.1 PREDICTED: protein kish [Gossypium arboreum] >XP_017969983.1 PREDICTED: protein kish isoform X2 [Theobroma cacao] >XP_022776305.1 protein kish-like [Durio zibethinus] >XP_022776306.1 protein kish-like [Durio zibethinus] >XP_038999444.1 protein kish-like [Hibiscus syriacus] >XP_039060695.1 protein kish-like [Hibiscus syriacus] >XP_039065388.1 protein kish-like [Hibiscus syriacus] >XP_039068971.1 protein kish-like [Hibiscus syriacus] >KAB2090681.1 hypothetical protein ES319_A03G139300v1 [Gossypium barbadense] >TYH25284.1 hypothetical protein ES288_A03G156700v1 [Gossypium darwinii] >TYI36618.1 hypothetical protein ES332_A03G154200v1 [Gossypium tomentosum] >TYI94088.1 hypothetical protein E1A91_D02G178900v1 [Gossypium mustelinum] >EOY00879.1 Uncharacterized protein TCM_010798 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 7.2e-30
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTV+LLGICTCTY+KMQFPAILEQR GFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVVLLGICTCTYLKMQFPAILEQRTGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          +MGVSIIFF
Sbjct: 62 TMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. ExPASy Swiss-Prot
Match: Q9VWH8 (Protein kish OS=Drosophila melanogaster OX=7227 GN=ksh PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQ-RNGFRGFFWKAARIGERLSPWVAVGC 65
          SALFNFHS L+VILL ICTC Y++  FP+++++ + GF G FWK ARIGER SPWV   C
Sbjct: 2  SALFNFHSLLSVILLLICTCAYLRSLFPSLIDRNKTGFMGTFWKLARIGERKSPWVGAAC 61

Query: 66 FSMGVSIIFF 75
            M  +++F+
Sbjct: 62 LIMAFTVLFW 71

[Close]

BLAST of Carg20456 vs. ExPASy Swiss-Prot
Match: Q9CR64 (Protein kish-A OS=Mus musculus OX=10090 GN=Tmem167a PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-15
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQ-RNGFRGFFWKAARIGERLSPWVAVGC 65
          SA+FNF S LTVILL ICTC Y++   P+IL++ + G  G FWK ARIGER SP+VA+ C
Sbjct: 2  SAIFNFQSLLTVILLLICTCAYIRSLAPSILDRNKTGLLGIFWKCARIGERKSPYVAICC 61

Query: 66 FSMGVSIIF 74
            M  SI+F
Sbjct: 62 IVMAFSILF 70

[Close]

BLAST of Carg20456 vs. ExPASy Swiss-Prot
Match: Q148I3 (Protein kish-A OS=Bos taurus OX=9913 GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQ-RNGFRGFFWKAARIGERLSPWVAVGC 65
          SA+FNF S LTVILL ICTC Y++   P++L++ + G  G FWK ARIGER SP+VAV C
Sbjct: 2  SAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAVCC 61

Query: 66 FSMGVSIIF 74
            M  SI+F
Sbjct: 62 IVMAFSILF 70

[Close]

BLAST of Carg20456 vs. ExPASy Swiss-Prot
Match: Q5BJC2 (Protein kish-A OS=Danio rerio OX=7955 GN=tmem167a PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQ-RNGFRGFFWKAARIGERLSPWVAVGC 65
          SA+FNF S LTVILL ICTC Y++   P++L++ + GF G FWK ARIGER SP+VA  C
Sbjct: 2  SAIFNFQSLLTVILLLICTCAYIRSLTPSLLDKNKTGFLGIFWKCARIGERKSPYVAFCC 61

Query: 66 FSMGVSIIF 74
            M ++I+F
Sbjct: 62 IVMALTILF 70

[Close]

BLAST of Carg20456 vs. ExPASy Swiss-Prot
Match: Q8TBQ9 (Protein kish-A OS=Homo sapiens OX=9606 GN=TMEM167A PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQ-RNGFRGFFWKAARIGERLSPWVAVGC 65
          SA+FNF S LTVILL ICTC Y++   P++L++ + G  G FWK ARIGER SP+VAV C
Sbjct: 2  SAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAVCC 61

Query: 66 FSMGVSIIF 74
            M  SI+F
Sbjct: 62 IVMAFSILF 70

[Close]

BLAST of Carg20456 vs. ExPASy TrEMBL
Match: A0A6J1GJV2 (Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111454546 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. ExPASy TrEMBL
Match: A0A6J1KKJ8 (Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111496111 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. ExPASy TrEMBL
Match: A0A6J1HB53 (Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111462406 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KM FPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMHFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. ExPASy TrEMBL
Match: A0A0A0KGV9 (Protein kish OS=Cucumis sativus OX=3659 GN=Csa_6G365220 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KM FPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMHFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. ExPASy TrEMBL
Match: A0A6J1BQQ0 (Protein kish OS=Momordica charantia OX=3673 GN=LOC111004584 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTVILLGICTCTY+KM FPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF
Sbjct: 2  SALFNFHSFLTVILLGICTCTYVKMHFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 61

Query: 66 SMGVSIIFF 75
          SMGVSIIFF
Sbjct: 62 SMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. TAIR 10
Match: AT5G20165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-31
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARIGERLSPWVAVGCF 65
          SALFNFHSFLTV+LL ICTCTY+KMQFPAILEQ+ GFRGFFWKAARIGERLSPWV+ GCF
Sbjct: 2  SALFNFHSFLTVVLLVICTCTYLKMQFPAILEQKTGFRGFFWKAARIGERLSPWVSAGCF 61

Query: 66 SMGVSIIFF 75
           MGVSIIFF
Sbjct: 62 MMGVSIIFF 70

[Close]

BLAST of Carg20456 vs. TAIR 10
Match: AT5G20165.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 285 Blast hits to 285 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 72; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNGFRGFFWKAARI-GERLSPWV 61
          SALFNFHSFLTV+LL ICTCTY+KMQFPAILEQ+ GFRGFFWKAARI    L P V
Sbjct: 2  SALFNFHSFLTVVLLVICTCTYLKMQFPAILEQKTGFRGFFWKAARIDSNALKPMV 57

[Close]

BLAST of Carg20456 vs. TAIR 10
Match: AT5G20165.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653). )

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 45/79 (56.96%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 6  SALFNFHSFLTVILLGICTCTYMKMQFPAILEQRNG-----------------------F 61
          SALFNFHSFLTV+LL ICTCTY+KMQFPAILEQ+ G                       F
Sbjct: 2  SALFNFHSFLTVVLLVICTCTYLKMQFPAILEQKTGIVFCQIKDALSDFSAYCYFRLQMF 61

The following BLAST results are available for this feature:

BLAST of Carg20456 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020134.1	4.8e-34	100.00	Protein kish-A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951814.1	2.2e-31	100.00	protein kish-like [Cucurbita moschata] >KAG6585214.1 Protein kish-A, partial [Cu...	[more]
XP_023002171.1	6.5e-31	98.55	protein kish-like [Cucurbita maxima] >XP_023536957.1 protein kish-like [Cucurbit...	[more]
XP_004144193.1	2.5e-30	97.10	protein kish [Cucumis sativus] >XP_008445493.1 PREDICTED: protein kish isoform X...	[more]
XP_012479171.1	7.2e-30	94.20	PREDICTED: protein kish isoform X1 [Gossypium raimondii] >XP_016665910.1 protein...	[more]

BLAST of Carg20456 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VWH8	1.2e-16	55.71	Protein kish OS=Drosophila melanogaster OX=7227 GN=ksh PE=3 SV=2	[more]
Q9CR64	8.9e-15	57.97	Protein kish-A OS=Mus musculus OX=10090 GN=Tmem167a PE=1 SV=1	[more]
Q148I3	1.2e-14	57.97	Protein kish-A OS=Bos taurus OX=9913 GN=TMEM167A PE=3 SV=1	[more]
Q5BJC2	1.2e-14	56.52	Protein kish-A OS=Danio rerio OX=7955 GN=tmem167a PE=3 SV=1	[more]
Q8TBQ9	1.2e-14	57.97	Protein kish-A OS=Homo sapiens OX=9606 GN=TMEM167A PE=1 SV=1	[more]

BLAST of Carg20456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJV2	1.1e-31	100.00	Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111454546 PE=3 SV=1	[more]
A0A6J1KKJ8	3.1e-31	98.55	Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111496111 PE=3 SV=1	[more]
A0A6J1HB53	1.2e-30	97.10	Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111462406 PE=3 SV=1	[more]
A0A0A0KGV9	1.2e-30	97.10	Protein kish OS=Cucumis sativus OX=3659 GN=Csa_6G365220 PE=3 SV=1	[more]
A0A6J1BQQ0	1.2e-30	97.10	Protein kish OS=Momordica charantia OX=3673 GN=LOC111004584 PE=3 SV=1	[more]

BLAST of Carg20456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20165.1	1.8e-31	88.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20165.2	1.2e-19	80.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20165.3	1.1e-15	56.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009653	Protein kish	PFAM	PF06842	DUF1242	coord: 14..47 e-value: 2.4E-17 score: 62.6
None	No IPR available	PANTHER	PTHR13229	PROTEIN KISH-A	coord: 6..74
None	No IPR available	PANTHER	PTHR13229:SF15	PROTEIN KISH	coord: 6..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20456-RA	Carg20456-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0009306	protein secretion
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane