Carg20453 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20453
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L17
Location	Carg_Chr12: 286284 .. 288136 (-)
RNA-Seq Expression	Carg20453
Synteny	Carg20453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGTGGAGTTTTGTCCTTCTCTGCCTATAAACCTAATTCAAGCACTTCTTCTTCTACCTCAGTCACCGCGTAATTCAACTGTTTTTCAGAAGCCGAAGTTGCAGACGTCGCTATGGTTCGTCTTTTATCCTCTTGTTTTATTCTTCATAACAATGTCATGTGAGGTTTATGTGTACGATAATCTTGAATTCCTCTTTATGTTCATTGTTGCAGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATGTATGTTTCTTGTGGATTTCGATCGATTTCTGTTTGAAGCTCTGCATTTCTTTTGTTTATCTTCTATCGGCTTGAATTTTATGGCTTCATTGAGATTTTTGCCTTGAACTGACACTTCGTTCTTTCTCTTTTCAGCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTAATTCCTCACCATTTCGAGCTTTGATATTTTCTTAGTTTCCATGAACTGTTTTCTACTTCTTTCCGATGTACAAAATATTTGATTCAGGGCCATATTTCCTTTCCGGTGCAAGTAATGGATTGGATAAGTGATAATATATGTGAGCTTTCGCCTTTTCCAGACCTGAAAAGAAGTGCTGAATCCTTATGTTTTTTGCCACTCGCATTAACCCGACATCGTCTAGCTTTCCATGATTACTTCTGTGTAACCTGATGATAAAAGCAGGGCTTCTGTTGCCTTCTATGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAACCCATAGTGTCTGAAGGTTCAGTAAATGATGCGACATATTTTAGCTTGTAGCTTTACTTGCATATTTCAGTGCATCATGTTGATCAAACTAACGACATTAACATGTTAATCTTTATATTGTAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTATGTAATAATTCCTGTTTAGTTTCACTCTAAACTGTTGCTCATAAGTTCAGTTTTTTCACTGTTGCTTATAAGTATTATGTTCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCGTATGTTCTGAATACAGTTTACTTATTTTTTCTCTGGATGTCTGCTTAATAAACATCCTGCCTGACATTTCCTTTCCCTTTGTTTTCCTTTTGATTGGCAGCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGGTAACCAATTAGATTGCCTAATTTACATTTGTGCTGTGAAGGAAATAGATAGATTGCTTTCTTATTGTTCATGATTCTACAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGAATCAGAAGTACAAATTTTGATCTGGGTTTTACAGTGCCATTTTTGTTTTGAAGTGAGTTTAATTATAAGTCACTATATAGGAGGTATTATGATTTAGATGTTTTGTGTGACATGTTATACTCGGGTTCCTTTCCAGTTCAATGTTGTGCTATCATCTATTATCTATAGTCATAGTGGAATTATTATTTGCAATTTTCATAAT

mRNA sequence

GTTTTGTGGAGTTTTGTCCTTCTCTGCCTATAAACCTAATTCAAGCACTTCTTCTTCTACCTCAGTCACCGCGTAATTCAACTGTTTTTCAGAAGCCGAAGTTGCAGACGTCGCTATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGAATCAGAAGTACAAATTTTGATCTGGGTTTTACAGTGCCATTTTTGTTTTGAAGTGAGTTTAATTATAAGTCACTATATAGGAGGTATTATGATTTAGATGTTTTGTGTGACATGTTATACTCGGGTTCCTTTCCAGTTCAATGTTGTGCTATCATCTATTATCTATAGTCATAGTGGAATTATTATTTGCAATTTTCATAAT

Coding sequence (CDS)

ATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSGASS

Homology

[Close]

BLAST of Carg20453 vs. NCBI nr
Match: XP_022951813.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >KAG7020137.1 60S ribosomal protein L17-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.8e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. NCBI nr
Match: KAG6585218.1 (60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.2 bits (918), Expect = 4.2e-95
Identity = 179/183 (97.81%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 9.3e-95
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 313.9 bits (803), Expect = 1.2e-84
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Carg20453 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.6e-84
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Carg20453 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLL NAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Carg20453 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.9e-77
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Carg20453 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.5e-76
Identity = 140/171 (81.87%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]

BLAST of Carg20453 vs. ExPASy TrEMBL
Match: A0A6J1KKP7 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.8e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. ExPASy TrEMBL
Match: A0A6J1GIS5 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454545 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.8e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. ExPASy TrEMBL
Match: A0A1S3BCV8 (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Carg20453 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 313.9 bits (803), Expect = 8.4e-86
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Carg20453 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 311.2 bits (796), Expect = 5.4e-85
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Carg20453 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-55
Identity = 118/176 (67.05%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
                                      ELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Carg20453 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951813.1	5.8e-97	100.00	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S riboso...	[more]
KAG6585218.1	2.9e-96	99.45	60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023545223.1	4.2e-95	97.81	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038885177.1	9.3e-95	97.81	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]
XP_004144196.1	1.2e-94	97.27	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]

BLAST of Carg20453 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	1.2e-84	89.20	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	7.6e-84	89.66	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	1.1e-79	86.47	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	6.9e-77	84.43	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	4.5e-76	81.87	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Carg20453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKP7	2.8e-97	100.00	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=...	[more]
A0A6J1GIS5	2.8e-97	100.00	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454545 P...	[more]
A0A6J1BRY8	5.9e-95	97.27	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	5.9e-95	97.27	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A1S3BCV8	5.0e-94	97.27	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]

BLAST of Carg20453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	8.4e-86	89.20	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	5.4e-85	89.66	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	2.6e-55	67.05	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 4..154 e-value: 4.6E-60 score: 199.8
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..183
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 17..152 e-value: 1.1E-37 score: 128.4
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..151 e-value: 6.2785E-35 score: 116.821
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..181 e-value: 3.7E-75 score: 253.6
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..168
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..183
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20453-RA	Carg20453-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome