Carg20357 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20357
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	arabinogalactan peptide 22-like
Location	Carg_Chr18: 11707263 .. 11708218 (-)
RNA-Seq Expression	Carg20357
Synteny	Carg20357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCCCTCCATAGCCATCCTCATTCACAGCTCTCAATTTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTGTTTTTCTGTCTTTTATTGAGGAAGAAAGGGCATTTTGGATTGAACAGAGACAGAGATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGTTAGTTCCCTTTATCCTTGTTAGTTTTTTCTGTTTGTTTCTTGAGAAACTTGCTGGGAAAATGACTGGATATCAAAAATTGGCTTTAGAATCAACTCTTCTCTTCTCTTCTCTTCAAAATCCATGTTCTAACCAGTACCAATTCAATTGGATCTCCTTGAATTGGAAATGGGTTTTGGGAAATGTGTCTCCTTGTTTGAATTGAAACAAAATCCACTCTTTTCTCCCACAAAAACCTGCCTTTTGTAGACATTTTCTGTTTGATTCTTGAAAATTTTACAGGGGAGAGATGACTGGAAATCCGAGAATGGTTTTGAAACCAACTCTCATCTTCAAAAACAGCTAAATCTGCTTAAATTGAAAATGGGTTTCTGGTATTTGAAGAGAAGAGTTATTGCGTTCTGAAAATGAATCTCCCTAAATTGAGAAAGGATTTGAATGGATTTGATTATGTTGCAGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGAAGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTTCCTTCTTTTTTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATA

mRNA sequence

CAAATCCCTCCATAGCCATCCTCATTCACAGCTCTCAATTTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTGTTTTTCTGTCTTTTATTGAGGAAGAAAGGGCATTTTGGATTGAACAGAGACAGAGATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACCTCCAAAAGCACCAAAAACAGAAGAAGCTCCAATTATGTGTATGAGATGAAGGGAGGAGGGCGTGGTGTTTCAAATGCCTTTTACCTTTTTTTTTTCCTTCTTTTTTTTTTTTTGAAAGATTGGCAGAGATTTCATTTGTAGAAAGTCAGTTGTATTATTATATA

Coding sequence (CDS)

ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTATGTTGTCATGTTGCCTGTATCTCGAGCTGAGCATGCCTCTTCTCCAGCTCCGGCTCCCACTAGCGATGGCACCGCAATAGACCAAGGCATAGCATACATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA

Protein sequence

MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALALTYIIH

Homology

[Close]

BLAST of Carg20357 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of Carg20357 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 6.3e-22
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLAL 60
          MA LRACFG+YAVIIAIFYVVMLPVSRAEHASS  PAPAPTSDGTAIDQGIAYILMLLAL
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 80

Query: 61 ALTYIIH 66
          ALTYIIH
Sbjct: 81 ALTYIIH 87

[Close]

BLAST of Carg20357 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 6.3e-22
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLAL 60
          MA LRACFG+YAVIIAIFYVVMLPVSRAEHASS  PAPAPTSDGTAIDQGIAYILMLLAL
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 85

Query: 61 ALTYIIH 66
          ALTYIIH
Sbjct: 86 ALTYIIH 92

[Close]

BLAST of Carg20357 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL L
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of Carg20357 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MAVLRACFGIY-AVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALA 60
          MAVL+ACFGIY AVIIA+FYVV LPVS AE +SSPAPAPTSDGT IDQGIAY+LML+AL 
Sbjct: 1  MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSDGTTIDQGIAYVLMLVALV 60

Query: 61 LTYIIH 66
          LTYIIH
Sbjct: 61 LTYIIH 66

[Close]

BLAST of Carg20357 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-11
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MA L+    I AV + I  V++LP++++ H+SSPAPAPTSDGT+IDQGIAY+LM++ALAL
Sbjct: 1  MASLKFPLEILAVFV-IISVILLPIAQS-HSSSPAPAPTSDGTSIDQGIAYVLMMVALAL 60

Query: 61 TYIIH 66
          TY IH
Sbjct: 61 TYFIH 63

[Close]

BLAST of Carg20357 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-11
Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          M+  R  FG+ + I++I + ++LP++ A+ A +PAPAPTSDGT IDQGIAY+LML+AL L
Sbjct: 1  MSGSRLFFGV-STIVSIIFAILLPMAHAQSA-APAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 61 TYIIH 66
          TY+IH
Sbjct: 61 TYLIH 63

[Close]

BLAST of Carg20357 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-08
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 14 IIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLALALTYIIH 66
          +IA+F  V   +S    A S  PAP+PTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg20357 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-08
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 14 IIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALALTYIIH 66
          + +  + V+L ++ A+ + +PAPAPTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ-SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg20357 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of Carg20357 vs. ExPASy TrEMBL
Match: A0A6J1HT15 (arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-22
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLAL 60
          MA LRACFG+YAVIIAIFYVVMLPVSRAEHASS  PAPAPTSDGTAIDQGIAYILMLLAL
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 80

Query: 61 ALTYIIH 66
          ALTYIIH
Sbjct: 81 ALTYIIH 87

[Close]

BLAST of Carg20357 vs. ExPASy TrEMBL
Match: A0A6J1HU96 (arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-22
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLAL 60
          MA LRACFG+YAVIIAIFYVVMLPVSRAEHASS  PAPAPTSDGTAIDQGIAYILMLLAL
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGTAIDQGIAYILMLLAL 85

Query: 61 ALTYIIH 66
          ALTYIIH
Sbjct: 86 ALTYIIH 92

[Close]

BLAST of Carg20357 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL L
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVL 60

Query: 61 TYIIH 66
          TYIIH
Sbjct: 61 TYIIH 65

[Close]

BLAST of Carg20357 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MAVLRA-CFGIY-AVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLAL 60
          MAVLRA CFGIY AV+IA+FYV+ LPVS AE +SSPAPAPTSDGT IDQGIAY+LML+AL
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSSPAPAPTSDGTTIDQGIAYVLMLVAL 60

Query: 61 ALTYIIH 66
           LTYIIH
Sbjct: 61 VLTYIIH 67

[Close]

BLAST of Carg20357 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 69.7 bits (169), Expect = 9.8e-13
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          MA L+    I AV + I  V++LP++++ H+SSPAPAPTSDGT+IDQGIAY+LM++ALAL
Sbjct: 1  MASLKFPLEILAVFV-IISVILLPIAQS-HSSSPAPAPTSDGTSIDQGIAYVLMMVALAL 60

Query: 61 TYIIH 66
          TY IH
Sbjct: 61 TYFIH 63

[Close]

BLAST of Carg20357 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-12
Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALAL 60
          M+  R  FG+ + I++I + ++LP++ A+ A +PAPAPTSDGT IDQGIAY+LML+AL L
Sbjct: 1  MSGSRLFFGV-STIVSIIFAILLPMAHAQSA-APAPAPTSDGTTIDQGIAYVLMLVALVL 60

Query: 61 TYIIH 66
          TY+IH
Sbjct: 61 TYLIH 63

[Close]

BLAST of Carg20357 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-09
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 14 IIAIFYVVMLPVSRAEHASS--PAPAPTSDGTAIDQGIAYILMLLALALTYIIH 66
          +IA+F  V   +S    A S  PAP+PTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Carg20357 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 14 IIAIFYVVMLPVSRAEHASSPAPAPTSDGTAIDQGIAYILMLLALALTYIIH 66
          + +  + V+L ++ A+ + +PAPAPTSDGT+IDQGIAY+LM++AL LTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ-SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Carg20357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945187.1	4.0e-24	100.00	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]
XP_022968217.1	6.3e-22	94.03	arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]	[more]
XP_022968216.1	6.3e-22	94.03	arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]	[more]
XP_022140891.1	3.8e-19	84.62	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_038898060.1	4.2e-18	83.33	arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac...	[more]

BLAST of Carg20357 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	1.4e-11	61.54	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	4.0e-11	56.92	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9M373	4.1e-08	59.26	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
O82337	7.1e-08	55.77	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]

BLAST of Carg20357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G081	1.9e-24	100.00	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]
A0A6J1HT15	3.1e-22	94.03	arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HU96	3.1e-22	94.03	arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1CHE0	1.9e-19	84.62	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 P...	[more]
A0A5D3BTZ5	1.5e-16	80.60	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Carg20357 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	9.8e-13	61.54	arabinogalactan protein 22	[more]
AT5G24105.1	2.8e-12	56.92	arabinogalactan protein 41	[more]
AT3G61640.1	2.9e-09	59.26	arabinogalactan protein 20	[more]
AT2G46330.1	5.0e-09	55.77	arabinogalactan protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 33..65 e-value: 2.4E-18 score: 65.7
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..65
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20357-RA	Carg20357-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane