Carg20321 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20321
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 11883369 .. 11885054 (+)
RNA-Seq ExpressionCarg20321
SyntenyCarg20321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCAGAAGCGACGAAGAGAATTAAACAGGGAGCCCCTCGGTCTCGGGAGACGGAAGGGACCGCAGAACTGGAGAAGGAGAAAGAGAAGGCGAAAGGAAGTGAGGTTCGTCTTGATTTTGGATCAAATATTGGGCCCTTGACTTCGGATCAAGTATTGGGCCCTCGACTTCGGATCAAATATTGGGCCCTTGACTCGGATCAAGTATTGGGCCCTTGACTTCGGATCAAGTATTGGGCCCTTGATTTTGGGCCGAAGAATTAGGTGGACATCCGAGATTTTATTAATTTTTTTTTTTAGAATTATAGAAATTAAATTCTCATCCATTAAGTTTGTAATTTTATTTATAAAAATAAATTTCGACTGTGGTAAAAATCAATGTTACAATTACTTTCATTTAAATGTAGGGATTTAAGTTTATAGGAGACAAATTTATGAGGTCCATATAAAAAGAATTGAATATTTATAGAAAAAGTTTTAGTATATGTTCCAAAGATTTAGAAAAGCAAAAATGTGGTTCAGTTTCACCGCAAAGGTACCAATCAACTCATACCCATTGGGCATTGCCATTTCCAAACCACCCTCCCATTCCAATCACTTCTCCAAATTCATTAAACACCTCACAAAATTCAGCTTCAATTCTAAGCTTATACTTATACTTTCTTTTTCTCCTTTTGATTTGTTCTTTCATGGAACAAACTACTAAAGATAAAAATATATATATATATATTTATAGAAGACAAATCACTTTAGATCATCACCTCTAAAAGGGGCCAAACAAAAATTTGTTTGAAACATCCGGTGTACAACCAAACATCCACATTCTTTTTTAATTTACTTTACGCTCCTTTCTGTTTTAAAAAAGACAGGATCTTTTTCCCCTTTTCACCAAAAAAAAAAAAAAAAAAACAAAATAGAGAGTCGTAGAAATAAATAATAATGTTGATGGCAATGAAATTTGTTGAACCAAAGTCGCGTGTTTCCCACGTGACAGCTGAGTAAAAGCCAAAGCCTTTCCATTCACCGGACCATCCATTCTCGGATCACCAACCAACCTTCTCTCTTCCTACTAACAAATGAGGTTTCAAAAATTGTTAATTGTTGTTAGTTGAAGCTAATTTATGATCAACCATCCCTTCATTATCTGTCTTCTTAAGTTTTTTATATTAAATTGCGTGCTGTAGCCCTCAATCTCAAACACCCAACTCCTTTTTTCATTTCCCCTTTTGCCTTTTCGCGACGAAGTTCAAAGCTCTACACAGTTGACTTATTGGGCGCAATCTGTGCTCGGCTCTCGTCCTTTTCAGCGCTGACCCAAGTCAACTTTCGATTGCTCTTTGGAATTTCAACCGGCATGTGGAAAATGAAACGGTAGAAAAAAAAAAGCAAAAAGCAAAAAAAAAGGTTATGGTTGAGCTTTCAAATTGAAGTTGTAGCTGTGTAGTACCAGATCGGGTTATTGTACTTCCATGCAGTACAAAACACTTTGGCCCGGTTTGGTAGGATCTTGAATTCCCACTCAACATAAGAAAATTGGGGCTCCCTGTTTTTGTGCCGCGTAATGTCATTGGGGTGGTTGGGTAGAGTCGTGAGAGACTGAGGAGTTTTGAAGATCCCCTTTGGAATATAATCGGGAGTCAAAGCAGCGATAGAGGACCTGAAGGGTTGATAATCGATGTTTGA

mRNA sequence

ATGAAACCAGAAGCGACGAAGAGAATTAAACAGGGAGCCCCTCGGTCTCGGGAGACGGAAGGGACCGCAGAACTGGAGAAGGAGAAAGAGAAGGCGAAAGGAAGTGAGGTTCGTCTTGATTTTGGATCAAATATTGGGCCCTTGACTTCGGATCAAGTATTGGGCCCTCGACTTCGGATCAAATATTGGGCCCTTGACTCGGATCAAAGTCGTGAGAGACTGAGGAGTTTTGAAGATCCCCTTTGGAATATAATCGGGAGTCAAAGCAGCGATAGAGGACCTGAAGGGTTGATAATCGATGTTTGA

Coding sequence (CDS)

ATGAAACCAGAAGCGACGAAGAGAATTAAACAGGGAGCCCCTCGGTCTCGGGAGACGGAAGGGACCGCAGAACTGGAGAAGGAGAAAGAGAAGGCGAAAGGAAGTGAGGTTCGTCTTGATTTTGGATCAAATATTGGGCCCTTGACTTCGGATCAAGTATTGGGCCCTCGACTTCGGATCAAATATTGGGCCCTTGACTCGGATCAAAGTCGTGAGAGACTGAGGAGTTTTGAAGATCCCCTTTGGAATATAATCGGGAGTCAAAGCAGCGATAGAGGACCTGAAGGGTTGATAATCGATGTTTGA

Protein sequence

MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRIKYWALDSDQSRERLRSFEDPLWNIIGSQSSDRGPEGLIIDV
Homology
[Close]
BLAST of Carg20321 vs. NCBI nr
Match: KAG7013328.1 (hypothetical protein SDJN02_26087, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.1 bits (510), Expect = 4.7e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI 60
           MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI
Sbjct: 1   MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI 60

Query: 61  KYWALDSDQSRERLRSFEDPLWNIIGSQSSDRGPEGLIIDV 102
           KYWALDSDQSRERLRSFEDPLWNIIGSQSSDRGPEGLIIDV
Sbjct: 61  KYWALDSDQSRERLRSFEDPLWNIIGSQSSDRGPEGLIIDV 101

[Close]
BLAST of Carg20321 vs. NCBI nr
Match: KAG6574258.1 (hypothetical protein SDJN03_28145, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-29
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI 60
          MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI
Sbjct: 1  MKPEATKRIKQGAPRSRETEGTAELEKEKEKAKGSEVRLDFGSNIGPLTSDQVLGPRLRI 60

Query: 61 KYWALDSDQSRE 73
          KYWALDSDQ+++
Sbjct: 61 KYWALDSDQNKK 72

The following BLAST results are available for this feature:
BLAST of Carg20321 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013328.14.7e-48100.00hypothetical protein SDJN02_26087, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6574258.14.9e-2995.83hypothetical protein SDJN03_28145, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg20321 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20321 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20321 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20321-RACarg20321-RAmRNA