Carg20318 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20318
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	homeobox-leucine zipper protein ATHB-12-like
Location	Carg_Chr18: 11900083 .. 11900902 (-)
RNA-Seq Expression	Carg20318
Synteny	Carg20318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGGTACCATAAACTCCTTTTTCCATTTTCATCAGTTCATCATGAACTGTAGTGGTAAGCACTCCCCCGGTATTTGAAACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGAGACGATTCCAGAGAAAACTAGGCTACATCCACTTAG

mRNA sequence

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGAGACGATTCCAGAGAAAACTAGGCTACATCCACTTAG

Coding sequence (CDS)

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGA

Protein sequence

MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG

Homology

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BLAST of Carg20318 vs. NCBI nr
Match: KAG7013331.1 (Homeobox-leucine zipper protein ATHB-7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60
           MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL
Sbjct: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120
           DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN
Sbjct: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120

Query: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE 180
           NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE
Sbjct: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE 180

Query: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG
Sbjct: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 234

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BLAST of Carg20318 vs. NCBI nr
Match: XP_022945963.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita moschata])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60
           MER EYIKIQ+LEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL
Sbjct: 1   MERPEYIKIQNLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120
           DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN
Sbjct: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120

Query: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE 180
           NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVT+LNNNSKTE
Sbjct: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTYLNNNSKTE 180

Query: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG
Sbjct: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 234

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BLAST of Carg20318 vs. NCBI nr
Match: XP_023541562.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438.0 bits (1125), Expect = 5.3e-119
Identity = 226/240 (94.17%), Postives = 230/240 (95.83%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRR------KKKKKKKSNNMNKRRFSDEQIRSLESIFY 60
           MERQEYIKIQ+ EVASSQTCPTPRR      KKKKKKKSNNMNKRRFSDEQIRSLESIFY
Sbjct: 1   MERQEYIKIQNFEVASSQTCPTPRRKKKKKKKKKKKKKSNNMNKRRFSDEQIRSLESIFY 60

Query: 61  SSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFR 120
           SSDSKLDSRKKVQLAAELGLQPRQIS+WFQNRRARWKSKQMENDFRSLRASYDNLASQFR
Sbjct: 61  SSDSKLDSRKKVQLAAELGLQPRQISVWFQNRRARWKSKQMENDFRSLRASYDNLASQFR 120

Query: 121 TLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLN 180
           TLQEENNSLLSQLQKLGELV+EEPGEGCYS NFGKNADENQAKLEILEDEPEQNGVT+LN
Sbjct: 121 TLQEENNSLLSQLQKLGELVEEEPGEGCYSNNFGKNADENQAKLEILEDEPEQNGVTYLN 180

Query: 181 NNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NNSKTENGGGHQATHLLEGRSNG SHSEEQVWCDFESDGGVIFEYQPCSSLHLQG SFWG
Sbjct: 181 NNSKTENGGGHQATHLLEGRSNGISHSEEQVWCDFESDGGVIFEYQPCSSLHLQGPSFWG 240

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BLAST of Carg20318 vs. NCBI nr
Match: XP_022923069.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 8.8e-74
Identity = 168/262 (64.12%), Postives = 191/262 (72.90%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTP-RRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSS 60
           MER+EY  + + E   VASSQTC TP RR++++KKK+NNMNKRRFSDEQIRSLESIFYSS
Sbjct: 1   MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 60

Query: 61  DSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTL 120
           DSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FRSLRA+YDNLASQF+TL
Sbjct: 61  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 120

Query: 121 QEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNN 180
           QEE NSLLSQLQKL ELV E P EG YS    +   E + K +   DE  QNGVT+LNNN
Sbjct: 121 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 180

Query: 181 SKTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD- 235
             T+  G        G + TH  EGRSN  SH+ E+                WC F+SD 
Sbjct: 181 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 240

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_022923068.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 8.8e-74
Identity = 168/262 (64.12%), Postives = 191/262 (72.90%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTP-RRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSS 60
           MER+EY  + + E   VASSQTC TP RR++++KKK+NNMNKRRFSDEQIRSLESIFYSS
Sbjct: 15  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 74

Query: 61  DSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTL 120
           DSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FRSLRA+YDNLASQF+TL
Sbjct: 75  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 134

Query: 121 QEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNN 180
           QEE NSLLSQLQKL ELV E P EG YS    +   E + K +   DE  QNGVT+LNNN
Sbjct: 135 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 194

Query: 181 SKTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD- 235
             T+  G        G + TH  EGRSN  SH+ E+                WC F+SD 
Sbjct: 195 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 254

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BLAST of Carg20318 vs. ExPASy Swiss-Prot
Match: P46897 (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-29
Identity = 69/115 (60.00%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 26  KKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQN 85
           KK KK   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ++IWFQN
Sbjct: 21  KKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQN 80

Query: 86  RRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGE 141
           +RARWKSKQ+E ++  LR +YDNLASQF +L++E  +L+S+LQ+L E  Q++  E
Sbjct: 81  KRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQE 134

[Close]

BLAST of Carg20318 vs. ExPASy Swiss-Prot
Match: Q9M276 (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-28
Identity = 92/227 (40.53%), Postives = 136/227 (59.91%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60
           ME  ++      E++S  T       KKK KKSN  N++RFS+EQI+SLE IF  S+++L
Sbjct: 1   MEEGDFFNCCFSEISSGMT-----MNKKKMKKSN--NQKRFSEEQIKSLELIF-ESETRL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120
           + RKKVQ+A ELGLQPRQ++IWFQN+RARWK+KQ+E ++ +LRA+Y+NLASQF  +++E 
Sbjct: 61  EPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEK 120

Query: 121 NSLLSQLQKLGELVQEEPGE------GCYSTNFGKNADENQAKLEILEDEPEQNGVT--- 180
            SL+S+LQ+L E +Q    E      G        + + +  K E  E   +Q  V    
Sbjct: 121 QSLVSELQRLNEEMQRPKEEKHHECCGDQGLALSSSTESHNGKSE-PEGRLDQGSVLCND 180

Query: 181 -HLNNNSKTENGG-----GHQATHLLEGRSNGNSHSEEQVWCDFESD 213
              NNN KTE  G      H+  +++E +++ +  +  + W  F SD
Sbjct: 181 GDYNNNIKTEYFGFEEETDHELMNIVE-KADDSCLTSSENWGGFNSD 217

[Close]

BLAST of Carg20318 vs. ExPASy Swiss-Prot
Match: Q9XH35 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 61/114 (53.51%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 38  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMEN 97
           K+RFS+EQI+SLES+F ++ +KL+ R+K+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E 
Sbjct: 31  KKRFSEEQIKSLESMF-ATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 90

Query: 98  DFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNA 152
           ++ +LR  YD L   + +L++E  +L+ QL+KL E++QE  G+  Y  N G +A
Sbjct: 91  EYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGK--YGDNAGDDA 141

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BLAST of Carg20318 vs. ExPASy Swiss-Prot
Match: Q651Z5 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 61/114 (53.51%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 38  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMEN 97
           K+RFS+EQI+SLES+F ++ +KL+ R+K+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E 
Sbjct: 31  KKRFSEEQIKSLESMF-ATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 90

Query: 98  DFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNA 152
           ++ +LR  YD L   + +L++E  +L+ QL+KL E++QE  G+  Y  N G +A
Sbjct: 91  EYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGK--YGDNAGDDA 141

[Close]

BLAST of Carg20318 vs. ExPASy Swiss-Prot
Match: Q01IK0 (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 7.9e-25
Identity = 61/133 (45.86%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 38  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMEN 97
           KRRF++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ++IWFQN+RARW+SKQ+E+
Sbjct: 74  KRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEH 133

Query: 98  DFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELV---QEEPGEGCYSTNFGKNADEN 157
           D+ +LR+ YD L S+  +L++E  +L  QL +L E +   +E  G G  +T    ++  N
Sbjct: 134 DYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSSCN 193

Query: 158 QAKLEILEDEPEQ 168
            +  E ++D+ ++
Sbjct: 194 GSGSEEVDDDDDK 206

[Close]

BLAST of Carg20318 vs. ExPASy TrEMBL
Match: A0A6J1G2H1 (homeobox-leucine zipper protein ATHB-12-like OS=Cucurbita moschata OX=3662 GN=LOC111450049 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.9e-124
Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60
           MER EYIKIQ+LEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL
Sbjct: 1   MERPEYIKIQNLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120
           DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN
Sbjct: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120

Query: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE 180
           NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVT+LNNNSKTE
Sbjct: 121 NSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTYLNNNSKTE 180

Query: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG
Sbjct: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 234

[Close]

BLAST of Carg20318 vs. ExPASy TrEMBL
Match: A0A6J1E599 (homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430852 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.3e-74
Identity = 168/262 (64.12%), Postives = 191/262 (72.90%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTP-RRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSS 60
           MER+EY  + + E   VASSQTC TP RR++++KKK+NNMNKRRFSDEQIRSLESIFYSS
Sbjct: 1   MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 60

Query: 61  DSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTL 120
           DSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FRSLRA+YDNLASQF+TL
Sbjct: 61  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 120

Query: 121 QEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNN 180
           QEE NSLLSQLQKL ELV E P EG YS    +   E + K +   DE  QNGVT+LNNN
Sbjct: 121 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 180

Query: 181 SKTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD- 235
             T+  G        G + TH  EGRSN  SH+ E+                WC F+SD 
Sbjct: 181 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 240

[Close]

BLAST of Carg20318 vs. ExPASy TrEMBL
Match: A0A6J1E8K2 (homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430852 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.3e-74
Identity = 168/262 (64.12%), Postives = 191/262 (72.90%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTP-RRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSS 60
           MER+EY  + + E   VASSQTC TP RR++++KKK+NNMNKRRFSDEQIRSLESIFYSS
Sbjct: 15  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 74

Query: 61  DSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTL 120
           DSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FRSLRA+YDNLASQF+TL
Sbjct: 75  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 134

Query: 121 QEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNN 180
           QEE NSLLSQLQKL ELV E P EG YS    +   E + K +   DE  QNGVT+LNNN
Sbjct: 135 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 194

Query: 181 SKTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD- 235
             T+  G        G + TH  EGRSN  SH+ E+                WC F+SD 
Sbjct: 195 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 254

[Close]

BLAST of Carg20318 vs. ExPASy TrEMBL
Match: A0A6J1J6P1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483056 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.9e-70
Identity = 165/261 (63.22%), Postives = 185/261 (70.88%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSD 60
           MERQEY  + + E   VASSQ C TPRR  ++KKK+NN NKRRFSDEQIRSLESIFYSSD
Sbjct: 15  MERQEYFILPNFETAAVASSQICSTPRR--RRKKKTNNTNKRRFSDEQIRSLESIFYSSD 74

Query: 61  SKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQ 120
           SKLDSRKKVQLA ELGLQPRQI+IWFQNRR RWKSK+MEN+FRSLRA+YDNLASQF+TLQ
Sbjct: 75  SKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQ 134

Query: 121 EENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNS 180
           EE NSLLSQLQKL ELVQE P EG YS    K   E + K +   DE  Q+GVT+L+NN 
Sbjct: 135 EEKNSLLSQLQKLSELVQEGPREGHYSNEIAKTIYETKEKPQSFHDELGQSGVTYLSNNY 194

Query: 181 KTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD-G 235
            T+  G        G + TH  EG SN  SH+ EQ                WC F+SD G
Sbjct: 195 NTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNGSFESSENWCGFDSDGG 254

[Close]

BLAST of Carg20318 vs. ExPASy TrEMBL
Match: A0A6J1J3H1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483056 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.9e-70
Identity = 165/261 (63.22%), Postives = 185/261 (70.88%), Query Frame = 0


Query: 1   MERQEYIKIQSLE---VASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSD 60
           MERQEY  + + E   VASSQ C TPRR  ++KKK+NN NKRRFSDEQIRSLESIFYSSD
Sbjct: 1   MERQEYFILPNFETAAVASSQICSTPRR--RRKKKTNNTNKRRFSDEQIRSLESIFYSSD 60

Query: 61  SKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQ 120
           SKLDSRKKVQLA ELGLQPRQI+IWFQNRR RWKSK+MEN+FRSLRA+YDNLASQF+TLQ
Sbjct: 61  SKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQ 120

Query: 121 EENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNS 180
           EE NSLLSQLQKL ELVQE P EG YS    K   E + K +   DE  Q+GVT+L+NN 
Sbjct: 121 EEKNSLLSQLQKLSELVQEGPREGHYSNEIAKTIYETKEKPQSFHDELGQSGVTYLSNNY 180

Query: 181 KTENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD-G 235
            T+  G        G + TH  EG SN  SH+ EQ                WC F+SD G
Sbjct: 181 NTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNGSFESSENWCGFDSDGG 240

[Close]

BLAST of Carg20318 vs. TAIR 10
Match: AT2G46680.1 (homeobox 7 )

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 69/115 (60.00%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 26  KKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQN 85
           KK KK   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ++IWFQN
Sbjct: 21  KKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQN 80

Query: 86  RRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGE 141
           +RARWKSKQ+E ++  LR +YDNLASQF +L++E  +L+S+LQ+L E  Q++  E
Sbjct: 81  KRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQE 134

[Close]

BLAST of Carg20318 vs. TAIR 10
Match: AT3G61890.1 (homeobox 12 )

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-29
Identity = 92/227 (40.53%), Postives = 136/227 (59.91%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKL 60
           ME  ++      E++S  T       KKK KKSN  N++RFS+EQI+SLE IF  S+++L
Sbjct: 1   MEEGDFFNCCFSEISSGMT-----MNKKKMKKSN--NQKRFSEEQIKSLELIF-ESETRL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEEN 120
           + RKKVQ+A ELGLQPRQ++IWFQN+RARWK+KQ+E ++ +LRA+Y+NLASQF  +++E 
Sbjct: 61  EPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEK 120

Query: 121 NSLLSQLQKLGELVQEEPGE------GCYSTNFGKNADENQAKLEILEDEPEQNGVT--- 180
            SL+S+LQ+L E +Q    E      G        + + +  K E  E   +Q  V    
Sbjct: 121 QSLVSELQRLNEEMQRPKEEKHHECCGDQGLALSSSTESHNGKSE-PEGRLDQGSVLCND 180

Query: 181 -HLNNNSKTENGG-----GHQATHLLEGRSNGNSHSEEQVWCDFESD 213
              NNN KTE  G      H+  +++E +++ +  +  + W  F SD
Sbjct: 181 GDYNNNIKTEYFGFEEETDHELMNIVE-KADDSCLTSSENWGGFNSD 217

[Close]

BLAST of Carg20318 vs. TAIR 10
Match: AT2G46680.2 (homeobox 7 )

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-28
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 26  KKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQN 85
           KK KK   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ++IWFQN
Sbjct: 21  KKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQN 80

Query: 86  RRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGE 141
           +RARWKSKQ+E ++  LR +YDNLASQF +L++E  +L+S  ++L E  Q++  E
Sbjct: 81  KRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVS--ERLKEATQKKTQE 132

[Close]

BLAST of Carg20318 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 )

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-21
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 38  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMEN 97
           KRR   EQ+++LE  F   D+KL+  +KV+LA ELGLQPRQ++IWFQNRRARWK+KQ+E 
Sbjct: 73  KRRLGVEQVKALEKNF-EIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLER 132

Query: 98  DFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQ-- 157
           D+  L++++D L     +LQ +N+SLL Q+++L   +  E  +G       K  + NQ  
Sbjct: 133 DYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSV 192

Query: 158 -AKLEILE 163
            A  E+LE
Sbjct: 193 MANNEVLE 199

[Close]

BLAST of Carg20318 vs. TAIR 10
Match: AT5G65310.2 (homeobox protein 5 )

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-21
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 38  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMEN 97
           KRR   EQ+++LE  F   D+KL+  +KV+LA ELGLQPRQ++IWFQNRRARWK+KQ+E 
Sbjct: 55  KRRLGVEQVKALEKNF-EIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLER 114

Query: 98  DFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQ-- 157
           D+  L++++D L     +LQ +N+SLL Q+++L   +  E  +G       K  + NQ  
Sbjct: 115 DYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSV 174

Query: 158 -AKLEILE 163
            A  E+LE
Sbjct: 175 MANNEVLE 181

The following BLAST results are available for this feature:

BLAST of Carg20318 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013331.1	2.2e-125	100.00	Homeobox-leucine zipper protein ATHB-7, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022945963.1	1.2e-123	98.72	homeobox-leucine zipper protein ATHB-12-like [Cucurbita moschata]	[more]
XP_023541562.1	5.3e-119	94.17	homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923069.1	8.8e-74	64.12	homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata]	[more]
XP_022923068.1	8.8e-74	64.12	homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg20318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46897	1.8e-29	60.00	Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7...	[more]
Q9M276	2.0e-28	40.53	Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
Q9XH35	1.2e-25	53.51	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=H...	[more]
Q651Z5	1.2e-25	53.51	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q01IK0	7.9e-25	45.86	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

BLAST of Carg20318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2H1	5.9e-124	98.72	homeobox-leucine zipper protein ATHB-12-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1E599	4.3e-74	64.12	homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A6J1E8K2	4.3e-74	64.12	homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1J6P1	2.9e-70	63.22	homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1J3H1	2.9e-70	63.22	homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita maxima OX=3...	[more]

BLAST of Carg20318 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46680.1	1.3e-30	60.00	homeobox 7	[more]
AT3G61890.1	1.4e-29	40.53	homeobox 12	[more]
AT2G46680.2	4.6e-28	58.26	homeobox 7	[more]
AT5G65310.1	3.2e-21	45.31	homeobox protein 5	[more]
AT5G65310.2	3.2e-21	45.31	homeobox protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..133
None	No IPR available	GENE3D	1.10.10.60		coord: 36..98 e-value: 4.9E-19 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..184
None	No IPR available	PANTHER	PTHR24326:SF534	HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN	coord: 1..233
None	No IPR available	PANTHER	PTHR24326	HOMEOBOX-LEUCINE ZIPPER PROTEIN	coord: 1..233
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 73..89 score: 58.42 coord: 64..73 score: 48.35
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 35..97 e-value: 8.6E-18 score: 75.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 38..91 e-value: 1.3E-17 score: 63.3
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 32..93 score: 17.345591
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 40..94 e-value: 2.56131E-15 score: 66.1128
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 93..135 e-value: 9.8E-14 score: 51.3
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 68..91
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 31..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20318-RA	Carg20318-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding