Carg20315 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20315
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S acidic ribosomal protein P1-like
Location	Carg_Chr18: 11911147 .. 11912061 (+)
RNA-Seq Expression	Carg20315
Synteny	Carg20315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCAGTGAGCTTGCTTGCGCCTACGCCGCCCTGGCTCTTCACGATGATGGAATTGCAATCACTGTACCAACCACTTTCTTTATCTCTCTCTCATTTTTCTTTTCTTTGAATGCTCGATGCGTGATTAGTCCGACTTTTTATTATTATTATTTTTTGTATCTAGGCGGACAAGATTGCAGCCGTAGTAGCAGCTGCAGGGCTCTGTGTGGAATCCTACTGGCCTAGCCTGTTTGCGAAGTTGGCGGAGAAGAGGGATATTGGGGACCTTCTTCTGAACGTTGGCTGTGGTGGCGGCGCTGCGGCTGCTGTGTCTGTAGCTGCTCCTGCTGGTGGTGCTGCGTCTGCTGCCGCTCCTGCCGTTGAGGAAAAGAAGGTATGCTGATGAATCTTTTTTCTACTCTTTCTTACAATTTAACTATATCTTTGATAAGTTTCTTTCATACGTTTACAACATACGATCATTTCAACTGTTCATGGACTCTCTCGGATGTAATAATTATGTAGGGAACCTTCCATAGACGCGTTTATAAACTCCGGTTATCAGTATTAACCCGTTAATCAAATATGCTGCTTTACCTTTGGTAGCTCTATCTAACCCACGTTTTGTATGTTGGTATGACTAATACTAGTTTGTCATGACAATACAATGGTCAAATTATGCTAATTAAAATGTTTACCTTTTCATAATTAACCCATTAGATGATCATAGCTATCCCTCGTTGAACTTGTATTGACAGCATAATTTGTAACTAGCAAATTTTAATGACCATCGTGATTGACATGGTAGTCGCCTGGAATGAATCTTATCTGTCTTTCCCCTTTCGATATTCGTTCATTCTTAAGCGTATTGTGCAGGAGGAGCCGAAGGAAGAGAGTGATGACGACATGGGATTCAGCTTATTCGATTAG

mRNA sequence

ATGTCTACCAGTGAGCTTGCTTGCGCCTACGCCGCCCTGGCTCTTCACGATGATGGAATTGCAATCACTGCGGACAAGATTGCAGCCGTAGTAGCAGCTGCAGGGCTCTGTGTGGAATCCTACTGGCCTAGCCTGTTTGCGAAGTTGGCGGAGAAGAGGGATATTGGGGACCTTCTTCTGAACGTTGGCTGTGGTGGCGGCGCTGCGGCTGCTGTGTCTGTAGCTGCTCCTGCTGGTGGTGCTGCGTCTGCTGCCGCTCCTGCCGTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGTGATGACGACATGGGATTCAGCTTATTCGATTAG

Coding sequence (CDS)

ATGTCTACCAGTGAGCTTGCTTGCGCCTACGCCGCCCTGGCTCTTCACGATGATGGAATTGCAATCACTGCGGACAAGATTGCAGCCGTAGTAGCAGCTGCAGGGCTCTGTGTGGAATCCTACTGGCCTAGCCTGTTTGCGAAGTTGGCGGAGAAGAGGGATATTGGGGACCTTCTTCTGAACGTTGGCTGTGGTGGCGGCGCTGCGGCTGCTGTGTCTGTAGCTGCTCCTGCTGGTGGTGCTGCGTCTGCTGCCGCTCCTGCCGTTGAGGAAAAGAAGGAGGAGCCGAAGGAAGAGAGTGATGACGACATGGGATTCAGCTTATTCGATTAG

Protein sequence

MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLLNVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of Carg20315 vs. NCBI nr
Match: KAG6574265.1 (60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 23  MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 82

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 83  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 132

[Close]

BLAST of Carg20315 vs. NCBI nr
Match: XP_022945965.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo] >KAG7013333.1 60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of Carg20315 vs. NCBI nr
Match: XP_022968593.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSEL CAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1   MSTSELVCAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKEEEPKEESDDDMGFSLFD 110

[Close]

BLAST of Carg20315 vs. NCBI nr
Match: XP_022140845.1 (60S acidic ribosomal protein P1-like [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGG-AASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAA VSVAAPAGG AASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Carg20315 vs. NCBI nr
Match: XP_023551718.1 (60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELACAYAALAL+DDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 27  MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61  NVGCGGGAAAAVSVAAPAGGA-ASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAA VSVAA AGGA ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 87  NVGCGGGAAAPVSVAASAGGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 137

[Close]

BLAST of Carg20315 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.7e-35
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           M++ ELAC YAAL L DDGIAITA+KIA +V AA + VESYWP+LFAKL EKR++ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           +VG GGG AA V+ AAPAGGAA+AAAPAVEEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGG-AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of Carg20315 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAPAGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAPA G  +AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Carg20315 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-30
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAP-AGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAP AGG A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Carg20315 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 4.2e-29
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAIT+DKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAA-VSVAAP-AGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           +NVG GGG   A VS AAP A G A+AAAPA EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Carg20315 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.7e-26
Identity = 68/110 (61.82%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELAC YAAL LHDDG+ ITAD I  +  AAG+ VE YWP+LFAKL  K+ + DL+ 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVG GGGAA A +  A  G  A+ AAP  EEKKE  +EE   DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEE---DMGFSLFD 107

[Close]

BLAST of Carg20315 vs. ExPASy TrEMBL
Match: A0A6J1G2H4 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111450051 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of Carg20315 vs. ExPASy TrEMBL
Match: A0A6J1HYH2 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111467766 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSEL CAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1   MSTSELVCAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKEEEPKEESDDDMGFSLFD 110

[Close]

BLAST of Carg20315 vs. ExPASy TrEMBL
Match: A0A6J1CGB2 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011416 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGG-AASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAA VSVAAPAGG AASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Carg20315 vs. ExPASy TrEMBL
Match: A0A6J1JAB2 (60S acidic ribosomal protein P1 OS=Cucurbita maxima OX=3661 GN=LOC111482693 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.8e-44
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS SELACAYAALAL+DDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 27  MSRSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61  NVGCGGGAAAAVSVAAPAGGA-ASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAA VSVAA AGGA ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 87  NVGCGGGAAAPVSVAASAGGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 137

[Close]

BLAST of Carg20315 vs. ExPASy TrEMBL
Match: A0A6J1E4K8 (60S acidic ribosomal protein P1 OS=Cucurbita moschata OX=3662 GN=LOC111430567 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.2e-44
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60
           MS+SELACAYAALAL+DDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL
Sbjct: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAAVSVAAPAGGA-ASAAAPAVEEKKEEPKEESDDDMGFSLFD 111
           NVGCGGGAAA VSVAA A GA ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Carg20315 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAPAGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAPA G  +AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Carg20315 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAPAGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAPA G  +AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Carg20315 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAPAGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAPA G  +AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Carg20315 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAP-AGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAP AGG A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Carg20315 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLL 60
           MST  ELAC+YA + L D+GIAITADKIA +V AAG+ +ESYWP LFAK+AEKR++ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAAVSVAAP-AGGAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 111
           +NVG GGG  A V+ AAP AGG A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of Carg20315 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574265.1	3.0e-48	100.00	60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945965.1	3.0e-48	100.00	60S acidic ribosomal protein P1-like [Cucurbita moschata] >XP_023541270.1 60S ac...	[more]
XP_022968593.1	2.5e-47	98.18	60S acidic ribosomal protein P1-like [Cucurbita maxima]	[more]
XP_022140845.1	2.6e-44	94.59	60S acidic ribosomal protein P1-like [Momordica charantia]	[more]
XP_023551718.1	3.4e-44	95.50	60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	6.7e-35	75.45	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LCW9	1.7e-30	66.07	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
Q8LEQ0	2.9e-30	67.26	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
O23095	4.2e-29	66.37	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P29763	9.7e-26	61.82	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of Carg20315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2H4	1.4e-48	100.00	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A6J1HYH2	1.2e-47	98.18	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111467766...	[more]
A0A6J1CGB2	1.3e-44	94.59	60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JAB2	2.8e-44	95.50	60S acidic ribosomal protein P1 OS=Cucurbita maxima OX=3661 GN=LOC111482693 PE=3...	[more]
A0A6J1E4K8	8.2e-44	94.59	60S acidic ribosomal protein P1 OS=Cucurbita moschata OX=3662 GN=LOC111430567 PE...	[more]

BLAST of Carg20315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01100.1	1.2e-31	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.2	1.2e-31	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.4	1.2e-31	66.07	60S acidic ribosomal protein family	[more]
AT5G47700.1	2.1e-31	67.26	60S acidic ribosomal protein family	[more]
AT5G47700.2	2.1e-31	67.26	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 1.1E-29 score: 104.1
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..109 e-value: 8.4E-25 score: 87.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..104
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..110
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..109 e-value: 7.18465E-17 score: 68.1171
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..110 score: 14.677766

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20315-RA	Carg20315-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome