Carg20298 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20298
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Rab5-interacting
Location	Carg_Chr02: 4387417 .. 4390285 (+)
RNA-Seq Expression	Carg20298
Synteny	Carg20298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAACCCTAGGAGTACTGTTCCTATAGGAGGATTTTATCCGCTCGTTTGCTGGAATTTAGATCTGAGCTTACTGTAGATCATTTGATTTTTTTTTTTTTTTAATTCTATTTAGTTTTCCGGTTTGATTGGATTGTCCGGTATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGACTGGTCACTTGGCCCCGTTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGTACTTGAATTTTATGTATTGGATTCAAATTACAATTGTTTCTGATTGTCTCGTAAGATTTACAATCTTCGTTCTTTATGCGTACGTCTTTACTGTTGCTGGTTATGTTCGTCGTTGTACTGACGAGGATGAATTCAGAATTAGGAATTAAGAGTTCTATTGTGGTGTTGAATGAAGGAGTTGTATTGCCTTATTGCATTTTGCACCGGACCTTTGAATCTCGTTCTTAGTTTCCGTTTATCAACTTTGTCAATAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTGTGGGGCGCCATACCTTTGGTTGGAGGCATATGGTTTCTAATGTAAGTTGTGCATTCCAAATTTCTGAGTACTCCATTACTTTGAAAGTACATATGCAAGCCAATTTGGCATTACTGATGAGGTTTGGGTTATTTCTAACAACAAGTATAAGCTGGAGTCCTGATGTGACTTTATTTCATTGTTTTGTATTTTTCCCCTTTGGAATCAATTGAATGTAACGTTGACAGTGTTTAATAGTAATTCTTGAGATTATAGGAGCAGTACTTGGAGAAACGTGATGCTCGCTTAGTATTATGCTGCAAATTCTTCTGTCCTTTCACGATTTTTTATGCAATCCCAAGTGATTTAAATATTAACCATGGGAGTCTTTCTTTCGTTGGTTCTTGACTGTGCTACACATCAATAGTCCTTTCTTAACGTTGTATGTAAATGCACGCAATTGTTGTATCTCAATTCGTTTTAGATCGTAGCTTAGGATGTGGATTCTTTGAGAAATGTGGTGCGGGATTTTGATCATGCTGCTCATCCAGTAATTATTTTTTAATTTTGTTTGTAAATGGAAGCTATCTTTACAGTGATAATGTGCATTTTCAGTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGGTAATTCGACATCTTTGTGCTTTACTATCGATTTATTTAGTAATACAATGCGCCATTAACCGTACACATCTCCAGGAGGGGCTTGTGTTGCTATCAAGTTCAAAATTTTCAAGAACAGTGTAATAATAGCTCAAAGCCCACCACCGTTAGCAGATATTATTCTCTTTGGGCTTTCCCTTTGTGAGATCCCATATCAGGTGGAAAGGGGAACGAAGCATTCTTTATAAGGGTGTAGAAACCTTTCTAGACGCATTTTAAAAACTTTGAGGGGAAGCCTGAAAAGAAAAGTCCAAAGAGGACAATATCTACTAGGGGTGGGTTTGAGCGGTTACAATCAGTCTCCTGGTCTAGACAGCTGACTTCTCTTTTTTTTTTTTTTTTCTTTTTTTTGTTTTTTCCAGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGATTGGCGAAGAACGATTTTGCATCATGAAATTACTTGGTGAAGTTCGAACAATGAACTTAGTTATACATATACTTGATGCCCAGCTCATTTACGCTTGCTTCTAATTGGCGGCACAGATTCTTTTAGCATTCATGATGTTGAACAAATTGATTTTTGAAGAGTAGGAAAACTCTAGCATCTGAACAATATGTCGTGATAGATTTTCAATCTCCATTTCATTGTAGACATTCTTCCATGGCCATATAGTGATAGACTAAGGACGTAATCCTTGTTAAATTAACACCTTATATTGGCATCATTTAAATAGCTAGGTGCTTGAGCTTGAAGTTGAGACCTTAACAATGTTGTGTACATTTGATGATAATTGGATAGGCTCCTCATTTTCTCAATGGCTTCTTTCATCCTGCACCATCCTAAGATAAGCCAGCAAGCACTTTATCGGTGCGATTAAGGTTTTTTCAGCTGAAATAAGCTTGCGAAAGATTGCTGTTACATTACATAATTGGAACTTAAGATTATAAATAACTAAACTATAGGGAACGAGAAGAAGCTTCTTTTCCTTTCTTTCTTCTCTGTTAGTGTAGCTTTTCTCTGCTTTTTAGGAAAAAAGAGACAGACAGGCTGCTAACTGACTGGACACGACATCGTGAATACGACCAGGTAAGCGGGAGATTAGAATCTTTGTTAGTTTTTTGATACTAACTTTTGTCTGTTAAAATGTCCTTATAGAACAGAATCATTGTTGGGTCTATGCTGTATGTGCAATATTATTGGTGATGGATCCTTTTTTTATGTCTACAACAGGTAACATGTTAGACCCATCCTCTTGTATTCCATCTCTCGCTAGTTTTCTTTATTCAAAATCTTCTTTAGGCCTACGGTATTATTTGTTGAAATTCGATTGAAAATTTTGTTATAGATTAATAAAGTATTCGTCTGGAAAAATAGGAAGCCAACATTTCTGACACTAAAGCCTTTCTTTAGTCTTTTAATTCTCGATATAGTGTCATGTAATGAGACGGCTAAACCCGTGCTCACGAATAACCAACCTGCAATGGATATAGAAGGTATAGTAATGCTATGAATGATCCAGTATCGAAAATACTTGTGATAATATTAGTAGAAGA

mRNA sequence

TGAAAACCCTAGGAGTACTGTTCCTATAGGAGGATTTTATCCGCTCGTTTGCTGGAATTTAGATCTGAGCTTACTGTAGATCATTTGATTTTTTTTTTTTTTTAATTCTATTTAGTTTTCCGGTTTGATTGGATTGTCCGGTATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGACTGGTCACTTGGCCCCGTTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTGTGGGGCGCCATACCTTTGGTTGGAGGCATATGGTTTCTAATTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGATTGGCGAAGAACGATTTTGCATCATGAAATTACTTGGTGAAGTTCGAACAATGAACTTAGTTATACATATACTTGATGCCCAGCTCATTTACGCTTGCTTCTAATTGGCGGCACAGATTCTTTTAGCATTCATGATGTTGAACAAATTGATTTTTGAAGAGTAGGAAAACTCTAGCATCTGAACAATATGTCGTGATAGATTTTCAATCTCCATTTCATTGTAGACATTCTTCCATGGCCATATAGTGATAGACTAAGGACGTAATCCTTGTTAAATTAACACCTTATATTGGCATCATTTAAATAGCTAGGTGCTTGAGCTTGAAGTTGAGACCTTAACAATGTTGTGTACATTTGATGATAATTGGATAGGCTCCTCATTTTCTCAATGGCTTCTTTCATCCTGCACCATCCTAAGATAAGCCAGCAAGCACTTTATCGGTGCGATTAAGGTTTTTTCAGCTGAAATAAGCTTGCGAAAGATTGCTGTTACATTACATAATTGGAACTTAAGATTATAAATAACTAAACTATAGGGAACGAGAAGAAGCTTCTTTTCCTTTCTTTCTTCTCTGTTAGTGTAGCTTTTCTCTGCTTTTTAGGAAAAAAGAGACAGACAGGCTGCTAACTGACTGGACACGACATCGTGAATACGACCAGGTAAGCGGGAGATTAGAATCTTTGTTAGTTTTTTGATACTAACTTTTGTCTGTTAAAATGTCCTTATAGAACAGAATCATTGTTGGGTCTATGCTGTATGTGCAATATTATTGGTGATGGATCCTTTTTTTATGTCTACAACAGGTAACATGTTAGACCCATCCTCTTGTATTCCATCTCTCGCTAGTTTTCTTTATTCAAAATCTTCTTTAGGCCTACGGTATTATTTGTTGAAATTCGATTGAAAATTTTGTTATAGATTAATAAAGTATTCGTCTGGAAAAATAGGAAGCCAACATTTCTGACACTAAAGCCTTTCTTTAGTCTTTTAATTCTCGATATAGTGTCATGTAATGAGACGGCTAAACCCGTGCTCACGAATAACCAACCTGCAATGGATATAGAAGGTATAGTAATGCTATGAATGATCCAGTATCGAAAATACTTGTGATAATATTAGTAGAAGA

Coding sequence (CDS)

ATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGACTGGTCACTTGGCCCCGTTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTGTGGGGCGCCATACCTTTGGTTGGAGGCATATGGTTTCTAATTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGA

Protein sequence

MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF

Homology

[Close]

BLAST of Carg20298 vs. NCBI nr
Match: KAG7035401.1 (hypothetical protein SDJN02_02197 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 3.7e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. NCBI nr
Match: XP_022947918.1 (uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. NCBI nr
Match: XP_023532324.1 (uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           IL+YSLAHF
Sbjct: 121 ILIYSLAHF 129

[Close]

BLAST of Carg20298 vs. NCBI nr
Match: XP_023007370.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 5.4e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSL HF
Sbjct: 121 ILVYSLVHF 129

[Close]

BLAST of Carg20298 vs. NCBI nr
Match: XP_038900616.1 (respirasome Complex Assembly Factor 1-like [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKE+ PVKFNLHQHQ+HQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 28  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGY 87
           +K+   +A+W DKD+  DV++W RQ +A+VLG++WG +PL G +    F  I+  V+Y Y
Sbjct: 26  SKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLY 85

Query: 88  YAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF 130
           ++  L++DEEE+GG   L +EG   S  LF++ WI+ Y+  H+
Sbjct: 86  FSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

[Close]

BLAST of Carg20298 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 28  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGY 87
           +K+   +A+W DKD+  DV++W RQ +AVVLG++WG +PL G +    F  I+  V+Y Y
Sbjct: 26  SKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLY 85

Query: 88  YAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAH 129
           ++  L++DEEE+GG   L +EG   S  LF++     ++  H
Sbjct: 86  FSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127

[Close]

BLAST of Carg20298 vs. ExPASy TrEMBL
Match: A0A6J1G7Y2 (uncharacterized protein C20orf24 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451658 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.9e-66
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. ExPASy TrEMBL
Match: A0A6J1L2S3 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499882 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEANPVKFNLHQHQEHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGAIPLVGGIWFLIFLAISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSL HF
Sbjct: 121 ILVYSLVHF 129

[Close]

BLAST of Carg20298 vs. ExPASy TrEMBL
Match: A0A1S4E4J0 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.4e-64
Identity = 124/129 (96.12%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. ExPASy TrEMBL
Match: A0A5D3DK85 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001250 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.4e-64
Identity = 124/129 (96.12%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. ExPASy TrEMBL
Match: A0A0A0KFE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLL 60

Query: 61  WGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of Carg20298 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-54
Identity = 100/130 (76.92%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MKEANPVKFN-LHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGL 60
           MKE+   K N L Q + HQ  HL+P KLAKLFDP+ASWDKDQLGDVLHWIRQ V ++ GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLA 120
           LWG+IPLVGGIW ++FLAIS+ +VYGYYAMILKVDEE+FGGH ALLQEGLFAS+TLFLLA
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 WILVYSLAHF 130
           WILVYSLAHF
Sbjct: 121 WILVYSLAHF 130

[Close]

BLAST of Carg20298 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-48
Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 1   MKEANPVKFNLHQHQE----HQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVV 60
           MKE    K +  Q Q     HQ  HL  F  AKLFD EASWDKDQLGDVLHWIRQ V ++
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  LGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLF 120
            GLLWGAIPLVGGIW L+FLAIS+ +VYGYYA++LK+DEE+FGGH ALLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLAWILVYSLAHF 130
           LLAWILVYSL+ F
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of Carg20298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035401.1	3.7e-66	100.00	hypothetical protein SDJN02_02197 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947918.1	1.4e-65	99.22	uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]	[more]
XP_023532324.1	1.9e-65	98.45	uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023007370.1	5.4e-65	97.67	uncharacterized protein C20orf24 homolog [Cucurbita maxima]	[more]
XP_038900616.1	7.8e-64	96.12	respirasome Complex Assembly Factor 1-like [Benincasa hispida]	[more]

BLAST of Carg20298 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	1.5e-17	40.78	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	1.5e-14	39.22	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of Carg20298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7Y2	6.9e-66	99.22	uncharacterized protein C20orf24 homolog isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1L2S3	2.6e-65	97.67	uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A1S4E4J0	8.4e-64	96.12	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078...	[more]
A0A5D3DK85	8.4e-64	96.12	Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001...	[more]
A0A0A0KFE5	1.1e-63	95.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1	[more]

BLAST of Carg20298 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	4.6e-54	76.92	Rab5-interacting family protein	[more]
AT2G29020.1	3.7e-48	69.17	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 45..124 e-value: 3.5E-14 score: 53.1
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 2..129
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20298-RA	Carg20298-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane