Carg20242 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20242
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptiontRNA-intron lyase
LocationCarg_Chr02: 4740921 .. 4741643 (-)
RNA-Seq ExpressionCarg20242
SyntenyCarg20242
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

mRNA sequence

ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

Coding sequence (CDS)

ATGGGGCTGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTCCAGTCTTCTCTAACACAATCTGACGCTCAAGGATTACTATCTAGTTGTAGTGTACTTTATCAAGCGGATGAAGAACAAGCCGAACTTCTTAATCGCGCTTGTTTTGGTCGACCAATTGTTTCCGCCGAGAAGGATAAGCAATGGTTTCAATTCGGCATGGAGGAGGCTTTTTACTTGTCTTATCATTTGAATTGCCTTAAAATTGTCGATGGACAGGATTGTGAAAAGAATTTCGATGAACTCTGGCTGTATATGAAGTCGCAAAAGGCTACATTCCCTGAGTTTTACAAGGCTTATCAAAATCTTCGGATGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGAGTTGATTTTGTTGCTTACCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTGCTTGTGTTGTCCGAAGGAGAAGGAATTAATGAAAATGGGAGATTGAGAGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACTCTGCTAGTTCTTACTGTCAATAGCAATGGAAACCGTTCTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAGCGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGCAACGAAGGTATAA

Protein sequence

MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Homology
[Close]
BLAST of Carg20242 vs. NCBI nr
Match: KAG7035455.1 (tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 494.2 bits (1271), Expect = 6.4e-136
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: KAG6605517.1 (tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492.7 bits (1267), Expect = 1.9e-135
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_022947593.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 3.0e-133
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_023532286.1 (tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.0 bits (1247), Expect = 3.9e-133
Identity = 236/239 (98.74%), Postives = 236/239 (98.74%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWHYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. NCBI nr
Match: XP_022947592.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 483.8 bits (1244), Expect = 8.6e-133
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match: Q9LSS3 (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.3e-71
Identity = 135/240 (56.25%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +LQ SL ++++ G LSSC+VL   + EQAELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR ++SAEK K+W Q   EEAF+L Y+L C+KI     C +N  + WLYMKS++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           F+KAY +LR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS-----GDSDRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSN--GNRSVSPSCLDSYSIEERTVTRWSPEQCRENPAT 239
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+ +T
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 235

[Close]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match: Q9M1E8 (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-70
Identity = 137/238 (57.56%), Postives = 170/238 (71.43%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +L+SSLTQ++A G LSSC+VL   + E+AELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFDELWLYMKSQKATFP 120
           FGR +V AEKDK+W Q   EEAF+L Y L C+KI + G+  E   D LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVD-LWRSMSSFKQDFA 120

Query: 121 EFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVW 180
             YKAY +LR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV    + I  N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNS--NGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           SD  C++RL GSVAK+LLVL VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match: Q5Z6B1 (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-59
Identity = 125/241 (51.87%), Postives = 156/241 (64.73%), Query Frame = 0 

Query: 2   GLRWK----GKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS--SCSVLYQADEEQAEL 61
           G RWK    GK   + A A+PMS IV +L++S   S    +LS    S +     EQA +
Sbjct: 5   GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64

Query: 62  LNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQK 121
           LNRA FG  I +A   K WFQ   EE FYL + LNC+++    + + +  ELW Y +S  
Sbjct: 65  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 124

Query: 122 ATFPEFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG-EGINENG 181
            +FPE YKAY +LR+KNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG E  N  G
Sbjct: 125 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 184

Query: 182 RLRVWSDFLCTIRLCGSVAKTLLVLTVNSNGNRSV-SPSCLDSYSIEERTVTRWSPEQCR 235
           RL VWSD LC +R  GSVAKTLLVLT++S+    + SP CL+   + ERT+TRW  +QCR
Sbjct: 185 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 244

[Close]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match: Q4JAF4 (tRNA-splicing endonuclease OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=endA PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 57/182 (31.32%), Postives = 81/182 (44.51%), Query Frame = 0 

Query: 36  QGLLSSCSVLYQADEEQAELLNRACFGRPI-----VSAEKDKQWFQFGMEEAFYLSYHLN 95
           QG +    VL    E+  E+     +G+P+      S E  K+     + EA YLS    
Sbjct: 3   QGEILGDKVLINDVEKAKEIYKLGYYGKPLDITKPKSPEDIKKPLILSLIEALYLSKKKI 62

Query: 96  CLKIVDGQDCEKNFDELWLYMKSQKATFPEF---YKAYQNLRMKNWVVRPGSQYGVDFVA 155
              I DG    K  D+  LY K      P F   Y  Y++LR K +VVR G +YG DF  
Sbjct: 63  IEVIRDG----KVIDDALLY-KIGMENIPRFELLYTVYEDLREKKFVVRSGMKYGADFAI 122

Query: 156 YRHHPALVHSEFAVLVLSEGEGINENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNSNGNR 210
           Y   P L H+ + V+ + E + I+ N       + L   R+  S  K L++  VN   NR
Sbjct: 123 YTVAPGLEHAPYLVIAIDEEQEISPN-------EILGFGRVSHSTRKNLILSIVNQR-NR 171

[Close]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match: Q9P6Y2 (Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 50/191 (26.18%), Postives = 83/191 (43.46%), Query Frame = 0 

Query: 71  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE---------- 130
           DK+ FQ   EEAF+L++ L  L++VD        +E  L      + FP           
Sbjct: 444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPED 503

Query: 131 ----FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSE------GEGI 190
                Y  Y + R   WV R G ++GVD++ Y+  P   HSEF ++V+         E  
Sbjct: 504 PFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFE 563

Query: 191 NENGRLRVWSDFLCTIRLCGSVAKTLLVLTV--------NSNGNRSVSPSCLDSYSIEER 234
           +E  + + WS  +   R+   V K+L+++ V        +    +    + L  ++I E 
Sbjct: 564 HEESK-KTWSWLMGVNRVLSHVLKSLVLVYVDVPPPPVFDEEMKKGGIAAALKKFTIREV 623

[Close]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match: A0A6J1G716 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.4e-133
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240

[Close]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match: A0A6J1G6W2 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.2e-133
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQDCEKNFDELWLYMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match: A0A6J1L2V2 (tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111499907 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.1e-129
Identity = 229/240 (95.42%), Postives = 231/240 (96.25%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIV QLQSSL QSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVCQLQSSLIQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDCE NF+ELW YMKSQ ATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLCYHLNCLKIVDGQDCETNFEELWHYMKSQNATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATKV 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVT WSPEQCRENPATK+
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTGWSPEQCRENPATKI 240

[Close]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match: A0A6J1L4U3 (tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111499907 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 4.8e-129
Identity = 229/239 (95.82%), Postives = 230/239 (96.23%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIV QLQSSL QSDAQGLLSSCSVLYQADEEQAELLNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVCQLQSSLIQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIVSAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDCE NF+ELW YMKSQ ATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLCYHLNCLKIVDGQDCETNFEELWHYMKSQNATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG NENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPATK 240
           DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVT WSPEQCRENPATK
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTGWSPEQCRENPATK 239

[Close]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match: A0A6J1CYW3 (tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.5e-119
Identity = 214/238 (89.92%), Postives = 224/238 (94.12%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQ +L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRAC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-INENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G  NENGRLRVW
Sbjct: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 238
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 238

[Close]
BLAST of Carg20242 vs. TAIR 10
Match: AT5G60230.1 (splicing endonuclease 2 )

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-72
Identity = 135/240 (56.25%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +LQ SL ++++ G LSSC+VL   + EQAELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR ++SAEK K+W Q   EEAF+L Y+L C+KI     C +N  + WLYMKS++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           F+KAY +LR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS-----GDSDRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSN--GNRSVSPSCLDSYSIEERTVTRWSPEQCRENPAT 239
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+ +T
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 235

[Close]
BLAST of Carg20242 vs. TAIR 10
Match: AT5G60230.2 (splicing endonuclease 2 )

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-72
Identity = 135/240 (56.25%), Postives = 175/240 (72.92%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +LQ SL ++++ G LSSC+VL   + EQAELL+R C
Sbjct: 6   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 65

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120
           FGR ++SAEK K+W Q   EEAF+L Y+L C+KI     C +N  + WLYMKS++  FP 
Sbjct: 66  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 125

Query: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVWS 180
           F+KAY +LR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWS
Sbjct: 126 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS-----GDSDRLRVWS 185

Query: 181 DFLCTIRLCGSVAKTLLVLTVNSN--GNRSVSPSCLDSYSIEERTVTRWSPEQCRENPAT 239
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RWSPE  RE+ +T
Sbjct: 186 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSREDQST 240

[Close]
BLAST of Carg20242 vs. TAIR 10
Match: AT3G45590.1 (splicing endonuclease 1 )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 137/238 (57.56%), Postives = 170/238 (71.43%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +L+SSLTQ++A G LSSC+VL   + E+AELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFDELWLYMKSQKATFP 120
           FGR +V AEKDK+W Q   EEAF+L Y L C+KI + G+  E   D LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVD-LWRSMSSFKQDFA 120

Query: 121 EFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVW 180
             YKAY +LR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV    + I  N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNS--NGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           SD  C++RL GSVAK+LLVL VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]
BLAST of Carg20242 vs. TAIR 10
Match: AT3G45590.2 (splicing endonuclease 1 )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 137/238 (57.56%), Postives = 170/238 (71.43%), Query Frame = 0 

Query: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60
           M  RWK KG+EAKALA+P+SK V +L+SSLTQ++A G LSSC+VL   + E+AELL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCEKNFDELWLYMKSQKATFP 120
           FGR +V AEKDK+W Q   EEAF+L Y L C+KI + G+  E   D LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVD-LWRSMSSFKQDFA 120

Query: 121 EFYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGINENGRLRVW 180
             YKAY +LR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV    + I  N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLV----QSIGGNDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNS--NGNRSVSPSCLDSYSIEERTVTRWSPEQCREN 236
           SD  C++RL GSVAK+LLVL VN   N  +   P CL+ Y++EE+T+ RWSPE  RE+
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSRED 233

[Close]
BLAST of Carg20242 vs. TAIR 10
Match: AT3G45577.1 (tRNA-intron endonucleases )

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-18
Identity = 50/99 (50.51%), Postives = 61/99 (61.62%), Query Frame = 0 

Query: 35  AQGLLSSCSVLYQADEEQAELLNRACFGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKI 94
           A G LSSC+V      EQAELL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI
Sbjct: 24  ALGFLSSCNVFL---SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKI 83

Query: 95  -VDGQDCEKNFDELWLYMKSQKATFPEFYKAYQNLRMKN 133
            + G+      D LW  ++S K  F   YKAY +LR KN
Sbjct: 84  SLHGRSLVNGVD-LWRSIRSFKPNFTILYKAYSHLRSKN 118

The following BLAST results are available for this feature:
BLAST of Carg20242 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035455.16.4e-136100.00tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp... [more]
KAG6605517.11.9e-135100.00tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp... [more]
XP_022947593.13.0e-13398.33tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata][more]
XP_023532286.13.9e-13398.74tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo][more]
XP_022947592.18.6e-13398.33tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata][more]
BLAST of Carg20242 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LSS33.3e-7156.25tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
Q9M1E83.7e-7057.56tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
Q5Z6B11.0e-5951.87Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica... [more]
Q4JAF41.3e-0931.32tRNA-splicing endonuclease OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM... [more]
Q9P6Y21.3e-0926.18Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain A... [more]
BLAST of Carg20242 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G7161.4e-13398.33tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1[more]
A0A6J1G6W24.2e-13398.33tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1[more]
A0A6J1L2V22.1e-12995.42tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111499907 PE=3 SV=1[more]
A0A6J1L4U34.8e-12995.82tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111499907 PE=3 SV=1[more]
A0A6J1CYW34.5e-11989.92tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1[more]
BLAST of Carg20242 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G60230.12.4e-7256.25splicing endonuclease 2 [more]
AT5G60230.22.4e-7256.25splicing endonuclease 2 [more]
AT3G45590.12.6e-7157.56splicing endonuclease 1 [more]
AT3G45590.22.6e-7157.56splicing endonuclease 1 [more]
AT3G45577.12.0e-1850.51tRNA-intron endonucleases [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 121..206
e-value: 1.9E-20
score: 72.7
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 36..108
e-value: 5.3E-14
score: 51.6
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 117..214
e-value: 2.7E-23
score: 83.8
NoneNo IPR availablePANTHERPTHR21227:SF2TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKEcoord: 1..236
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 1..236
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 118..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20242-RACarg20242-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0000379 tRNA-type intron splice site recognition and cleavage
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000213 tRNA-intron endonuclease activity
molecular_function GO:0004518 nuclease activity