Carg20227 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20227
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor MYB98-like
LocationCarg_Chr11: 504631 .. 505981 (-)
RNA-Seq ExpressionCarg20227
SyntenyCarg20227
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAATTGCAGAATTGTGCTCCAGTGAAAACGGCGGCAGCGATGGAGTTTGAAGTAACAAAAGAACTTGATTTAGTAGAAATGATGAGTCAAGTGAATGAAGTTAACAAGATGAGATGAGCCAATTAGTACATACCACTCTCACGTCATATTTGTCTCCAACCTCCAAGCATCGTTTATATCCTTCTAATGCTAGGCTAAGAAAATTGTCTCGGTCATCCTGATACATAAATTGCAGGAAATAAACAGCAGCCTTTGATGAAGTTGCATGTAAAAACAAAGAGTCTAAAGCTCCATAGAAACATGGAGACGTGAAGCATGGATTCTATTTTGGATACATGTCCTGAGTCTGCAACATGCCCCTTGACACTTTTACTATACGTAGAAAGGCTTGACCCTCCAATTACATAGCAAACTACTGCTTAATCTACTCTAAGAGGCTCATCAGCCATTTAGTGTCCCAAGATGAGTGTCAATATTGCATTAGTGTATAATTAATTTCAATTTTAGCAGTAACGGATGGGCTGGACATGCTGATATGAACGAATAAATGATCATGAGCAAAAAAAGTTAAAAAATACTAAAAATAGAAACATTAGATAAAAGATAAAACAATTATTGGTCACTTAGATAAACAACATTTCGTTTACAAAAAGAAGAAACGGTCCCTAAAACTGTATGAAATCTTTAACACATTCCTTTGATCTTCCCAACTCCCTGGGTGGTTTGGTGGAGCCCCCTTAAAAGTTTTTGTTGGCCTTAAAAGTTTTCAGTGGACTGTTTTTGGTTTTTGTGTGGTTTCTCAAGCTCTTCCATGCCCTAGTGTTTGGTTTTATTTTTTCTTTTTTAGTTTAGGTGGTTTGGTGGTGTTCTTAGGCTCTGGTTGTTAAGTCTTTTTTGTGTTTATCATCTATTTTTGCCATTTCCTTTGGTGTCTTCTTCGGATTTTCGTTTTTGTTCTTTCAGGTTGCTTACTTCGTCCAGGTTGATATCCTTGAGCATTAGTCTTGTATTATTTACTCGATGAAAAGTTTCATTTTTTGTTAAAAAAATATTTTAACACATACAAACACACACACACATGCATACATAAATATATATATATGTTGTCAATAGATATCAAGAGAGTAATAATGAAAATTTTTGGAATACTTAATGTATTTCATGTCTACAGATATTGAATTATCAGTTAAAATGTTTGTCCTTGTCCATGCTCCAAAAATGGACAAAAGCACAAATGAACATACCTGCAATTTGAAAATTGTACAACAGGTTTCTGATTGCATTAGAATAATATTTCAGATGGTCGAATCAGAAATTGAACGTAAAGTATGAAAGCGAAGCTTAA

mRNA sequence

ATGGAGAAATTGCAGAATTGTGCTCCAGTGAAAACGGCGGCAGCGATGGAGTTTGAAGTAACAAAAGAACTTGATTTAGTAGAAATGATGAGTCAATTTAGGTGGTTTGGTGGTGTTCTTAGGCTCTGGTTGCTTACTTCGTCCAGATGGTCGAATCAGAAATTGAACGTAAAGTATGAAAGCGAAGCTTAA

Coding sequence (CDS)

ATGGAGAAATTGCAGAATTGTGCTCCAGTGAAAACGGCGGCAGCGATGGAGTTTGAAGTAACAAAAGAACTTGATTTAGTAGAAATGATGAGTCAATTTAGGTGGTTTGGTGGTGTTCTTAGGCTCTGGTTGCTTACTTCGTCCAGATGGTCGAATCAGAAATTGAACGTAAAGTATGAAAGCGAAGCTTAA

Protein sequence

MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQFRWFGGVLRLWLLTSSRWSNQKLNVKYESEA
Homology
[Close]
BLAST of Carg20227 vs. NCBI nr
Match: KAG7021453.1 (hypothetical protein SDJN02_15178, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQFRWFGGVLRLWLLTSSRWSNQKLNVKYE 60
          MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQFRWFGGVLRLWLLTSSRWSNQKLNVKYE
Sbjct: 1  MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQFRWFGGVLRLWLLTSSRWSNQKLNVKYE 60

Query: 61 SEA 64
          SEA
Sbjct: 61 SEA 63

[Close]
BLAST of Carg20227 vs. NCBI nr
Match: XP_022926545.1 (transcription factor MYB98-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 418 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 449

[Close]
BLAST of Carg20227 vs. NCBI nr
Match: KAG6587469.1 (Transcription factor MYB98, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021449.1 Transcription factor MYB98, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 409 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 440

[Close]
BLAST of Carg20227 vs. NCBI nr
Match: XP_023530986.1 (transcription factor MYB98-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 418 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 449

[Close]
BLAST of Carg20227 vs. NCBI nr
Match: XP_023003986.1 (transcription factor MYB98-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 418 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 449

[Close]
BLAST of Carg20227 vs. ExPASy TrEMBL
Match: A0A6J1KQU6 (transcription factor MYB98-like OS=Cucurbita maxima OX=3661 GN=LOC111497434 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 418 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 449

[Close]
BLAST of Carg20227 vs. ExPASy TrEMBL
Match: A0A6J1ELF0 (transcription factor MYB98-like OS=Cucurbita moschata OX=3662 GN=LOC111433656 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 33
           MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ
Sbjct: 418 MEKLQNCAPVKTAAAMEFEVTKELDLVEMMSQ 449

The following BLAST results are available for this feature:
BLAST of Carg20227 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021453.11.1e-26100.00hypothetical protein SDJN02_15178, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022926545.13.3e-07100.00transcription factor MYB98-like [Cucurbita moschata][more]
KAG6587469.13.3e-07100.00Transcription factor MYB98, partial [Cucurbita argyrosperma subsp. sororia] >KAG... [more]
XP_023530986.13.3e-07100.00transcription factor MYB98-like [Cucurbita pepo subsp. pepo][more]
XP_023003986.13.3e-07100.00transcription factor MYB98-like [Cucurbita maxima][more]
BLAST of Carg20227 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20227 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KQU61.6e-07100.00transcription factor MYB98-like OS=Cucurbita maxima OX=3661 GN=LOC111497434 PE=4... [more]
A0A6J1ELF01.6e-07100.00transcription factor MYB98-like OS=Cucurbita moschata OX=3662 GN=LOC111433656 PE... [more]
BLAST of Carg20227 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20227-RACarg20227-RAmRNA