Carg20195 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20195
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin-protein ligase RGLG2-like
Location	Carg_Chr11: 314450 .. 319062 (-)
RNA-Seq Expression	Carg20195
Synteny	Carg20195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTATCGATTCTTCTCAAACTTGCTTCCCTGGCCGTGAACTTCTCCGCCATCGCCTAATCTCATCGCCTTTTTCGTTTCAATCGCAGTACCCTTGCTTCTCTACTTGTATCTTCTTCAAGAACTAGTTCTGTTCGCTCTCCAAATTGCGCCCTGAGTTTCCAGCTCTGTAAGTTTTATTCCCCTTTTCAACTTCTTATATTCTTCCGTGATTGGATTCTGCCGATGAATTTTTGTATTTGGAATTCTGGATGTTTGTTATTTGCTCTGATCTGTGAGGGAATGTGGCTGAAACTTTAAAATGCACCTGTTTAGGTCGACTTTGTTTAGAGTAATAGATGGTTATATTCTCTGCTTATCTCGTGAAATTTAACCCAAATCTTTGTCAAATCAATGAGCCTGAATATTAGCATTGCTTCTACGAAATTCGAGTTTCGTTTTATTTTGAAGGGGTTTGGAATTGGATTGCCTTTAAGAAATTTCGGTTTCTTGCAAAAGTTCTCGGATTAATAAGTATCATCTTTACCTTTAGGACTCTTGCTGATTTTAAACCTCTTTTCTATTCTGGGGTTTGATTTGTGAAATTTAGTCTCCTCAATATGTAAAAACTATGAGATTTTCCACTTAATGATACTTGCAATCACCTTCATTCTGCAGAGTTCTTGTAAAGTGATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTAGTCGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATATGCTCAACCAAGAACCACGCCCCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTCTAGCTGTAGTTCGCGTTGTAAGACTTTTATCGACACTATATTTCGACGTGAAAGTTATTTATGTTTCTTTGATTCTCTTCACAGGTTACTGCAGCATTGGCTAGTGCTGGCCTGGAGTCTTCAAATCTTATTGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTTCATCCTTGCTTTGGCCATTCAATGTTATGATCTATCACTTTAATAGCATGCGCACATGCTAATGATGCCTTTTATATAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCCAAATCCCTATGAACAAGCAATAGCAATTATTGGGCAAACATTATCGTCATTCGATGAGGATAATATGATCCCTTGCTTCGGTTTTGGAGATGGTATTTCTTTGTGCAGTCGATCTATATTTTGAACACATGTTTGTTTCAAATTAACAATGGTGAAGTATGTCATTCTAAATGTTGGCAGCATCAACTCATGACCAAGAGGTTTTCAGTTTTTATCCAGACGAGCGATTCTGTAATGGATTTGAAGAAGTGTTGAGTAGATATAGGGAACTCATGCCTCATCTTCGACTAGCAGGTTGCAGCTGTCTGTTTGCTATTACACTTCTGTGTTAGCTTTTACTTACTATACTTCCATAATTTCATTTCTGGGACAGGGCCAACATCATTTGCCCCTATTATCGAAATGGCTATCACAATTGTAGAGCAAAGTGGCGGCCAGTACCATGTATTGGTAATAATAGCTGATGGTCAGGTACTTTCATCTCTATTCCCACCGACTTCAATTTTGGTTGTTTTGGACTTCATGTTTATAACATATCTTCCTATTTGTTCCCAGATACATAAGAAATGAGTAATTATATAAACAACATTAGTTTCACAATGAGCCGTGGAAGTATGATACCTTTTAATTTGAGTCTGAGAAACAGAAACAAAAATTGCAAGTGCAGCGAGTGTAGATCATAGGCAGAAATAATGCGTCAAAATTTCTAATTTTTGAAGGATTTAGAATTCGGTCAGTTTAATTTATGAACCAATACACTGCTTGTTCAGAAATTTATTGTAACAGCCGCCACCACTCACCGCTAGCAAATATTGTCCTCTTTAGGTCTTTCCTTTCGGGCTTCTCTTCAAGGTTTTTAAAATGCGTCTGTTTGGGAGAGTTTTCCACACCCTTATAAAGAATACTTTGTTCTCCTCCCTAACCGAATGAGATCTCACAGTCCACCCCTTTCGGGGCCTAGCATCTTCTCTGACACTCGTTCCCTTTTCCAATCAATGTGGGACCTCCAATCCACCCCCTTTGGGGTCCAGCGTTCTTGTTGGTACACCGCCTTGTATCCACACCCCCTTTGGGGCCCAGCGTCCTTGTTGACACACCGCCTTGTGTCCACCCCCCTTTGGGACTCAGCCTCATCGCTGGCACATCGCCCGATGTCTGGCTCTGATACCATTTGTAACAGCCTACCGCCACCACTAGCAGATATTGTCTTCTTTAGGCTTTCCTTTTCGGGCTTTCCCCCCAAGATTTTTAAAACATGTCTTCTAGGGAGAGGTTTCCACACCCTTATGAAGAATGCTTTGTTCTCCACTACAACCGATTGAGATCTCATAATCCACTCTGATCTTTGGGGCCCAGCATCCTCGCTGGCACTCATTCCCTTCTCCAATTGATGTGGGATCTCCAATCCACCCCCTTCGGATTCCAGTGTCCTTGTTGGCACACCACCTCGTATCCACCCCCTTTCGGGACTCAACCTCCTCACTAGCACATCGCCTGTCGTCTGGCTCTGATACCATTTGTAATAGCCCACTGCCTATCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCGAAGTTTTTGAAACGTATCTGCTAGGGAGAGAGGTTTTAAACCCTTATAAAAAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACCGTTATCATGATATACTTTAATATTGGTGGTAAAGATTGGGCATTATCAGCGAGTGAACAGTGATTTTCATCATTCATGTGGTCTCTAGAGTCTCCAGCCTGTCTGATGTCTGTGTCGGGTACCAACACTGAGACAAATTTTTTGACAGGTTACAAGAAGTGTTGATACTGAGCGTGGGCAGTTTAGCTCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGGTAGGTTCAAGTTATCTAAAATGGACAGAAATGGCGTTGTTCGTATTCCCATACCACGTAACGTCCCTAACTTCATAATGAATTGCAGTGAATACCCTCTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAATATCCCAGCTCGAGCCTTCGATAACTTCCAAGTAAGTACTGTTTGCTTCTTGAGCTGAACTTGCTTCTGCTATTGTTTGAAGTCTTTAACACAATCTGAGAAATGCTATTTTTGCACTTTGATTCTGCAGTTTGTGAATTTCACAGATATAATGTTGAAAAATATGGATCGATCAAGAAAGGAAGCGGAATTCGCTCTTTCAGCACTCATGGAAATACCTTCTCAGTATAAAGCAACAATAGAGCTTGATATTTTGGGGTAATAACAAGATTTCAGAGGAATATAGTAGAGTATTCCTATCAGTTTTTCTTTTTTAAGCCATATTTTCTCTCGTTGCTCCACCAGTGCCAGTAGAGGGAAGGCAATCGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCTCCCAAAAGACCTCAAACACGAGCAGTTCTTGCACAACACCACCCTCAAATGGTGGAGTTGCTCCTGTCCGATCTGCGCCTCCTCTAAGTTCGGTTTCTGATGACCATGTAAATGCTTCTTTTACCTTTGTTTTCGTTTTACTTGGTACAATAATTGGAAACGGAAATGAAGATTTTTACACTGTCTGGTGCAGACTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGGTAATAGCATTGCCAAGTTTTTTTATGGCTGGCTGAATGAAACATTACCCAAAAGAACACTTACCTTCTACTATCTGCAGACATGCTGTGAATGTGGACAGGATCTTGAGTCGTGCCCCATATGCCGCAGCTTTATCCAAACTAGGATAAAGCTTTATTAGCAAAAACTCCCTGCTGAATTCTCATGTCCAACATCAACTCCAGCTTCTTGCTCGAGTACAAGGTGTCGTTGACGTGGTGAGTACGATATCATTTGTAAATATCATTAGTTTTTTCCTCGGCGTTCCATAAAATGTCTTGAAATGATGTTTGTTAAGCCTCATGGAAGCAACAGGCGCCTCGAATTCTTTATGAAAACTAGTTCTTGCATTAGTTTGAATGTAATTACAATATCTTTAGTGGGCAGTGAAACTCGACTTCTCATTACATTGAACTCTACCTACCACTTCACAGAAAGATACGCTTGCATTGATTTCTATAAGGTTATAGAGATTAGAGATCAGCCAACTTTAGTGTAATAGTCCAACTCCATTGCTAGACAGTTGTAGGCTAACTTTAGTGTAATAGTCCAAGTCCATTGCTAGCAAATATTGTCTCTTTTGGTCCATTACTTAATAGCTACCATCTTCATGGTTTTAAAACGTGTCTGTTAGGGAGAAGTTTTCACACCCT

mRNA sequence

CACTATCGATTCTTCTCAAACTTGCTTCCCTGGCCGTGAACTTCTCCGCCATCGCCTAATCTCATCGCCTTTTTCGTTTCAATCGCAGTACCCTTGCTTCTCTACTTGTATCTTCTTCAAGAACTAGTTCTGTTCGCTCTCCAAATTGCGCCCTGAGTTTCCAGCTCTAGTTCTTGTAAAGTGATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTAGTCGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATATGCTCAACCAAGAACCACGCCCCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTTACAAGAAGTGTTGATACTGAGCGTGGGCAGTTTAGCTCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGCCAGTAGAGGGAAGGCAATCGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCTCCCAAAAGACCTCAAACACGAGCAGTTCTTGCACAACACCACCCTCAAATGGTGGAGTTGCTCCTGTCCGATCTGCGCCTCCTCTAAGTTCGGTTTCTGATGACCATACTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTGAGTCGTGCCCCATATGCCGCAGCTTTATCCAAACTAGGATAAAGCTTTATTAGCAAAAACTCCCTGCTGAATTCTCATGTCCAACATCAACTCCAGCTTCTTGCTCGAGTACAAGGTGTCGTTGACGTGGTGAGTACGATATCATTTGTAAATATCATTAGTTTTTTCCTCGGCGTTCCATAAAATGTCTTGAAATGATGTTTGTTAAGCCTCATGGAAGCAACAGGCGCCTCGAATTCTTTATGAAAACTAGTTCTTGCATTAGTTTGAATGTAATTACAATATCTTTAGTGGGCAGTGAAACTCGACTTCTCATTACATTGAACTCTACCTACCACTTCACAGAAAGATACGCTTGCATTGATTTCTATAAGGTTATAGAGATTAGAGATCAGCCAACTTTAGTGTAATAGTCCAACTCCATTGCTAGACAGTTGTAGGCTAACTTTAGTGTAATAGTCCAAGTCCATTGCTAGCAAATATTGTCTCTTTTGGTCCATTACTTAATAGCTACCATCTTCATGGTTTTAAAACGTGTCTGTTAGGGAGAAGTTTTCACACCCT

Coding sequence (CDS)

ATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTAGTCGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATATGCTCAACCAAGAACCACGCCCCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTTACAAGAAGTGTTGATACTGAGCGTGGGCAGTTTAGCTCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGCCAGTAGAGGGAAGGCAATCGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCTCCCAAAAGACCTCAAACACGAGCAGTTCTTGCACAACACCACCCTCAAATGGTGGAGTTGCTCCTGTCCGATCTGCGCCTCCTCTAAGTTCGGTTTCTGATGACCATACTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTGAGTCGTGCCCCATATGCCGCAGCTTTATCCAAACTAGGATAAAGCTTTATTAG

Protein sequence

MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGARKRVERKYSRIDDHYNSLDQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLPPPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCGHQTCCECGQDLESCPICRSFIQTRIKLY

Homology

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BLAST of Carg20195 vs. NCBI nr
Match: KAG7021421.1 (E3 ubiquitin-protein ligase RGLG2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLDQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLP 120
           RKRVERKYSRIDDHYNSLDQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLP
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLP 120

Query: 121 PPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCG 180
           PPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCG
Sbjct: 121 PPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCG 180

Query: 181 HQTCCECGQDLESCPICRSFIQTRIKLY 209
           HQTCCECGQDLESCPICRSFIQTRIKLY
Sbjct: 181 HQTCCECGQDLESCPICRSFIQTRIKLY 208

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BLAST of Carg20195 vs. NCBI nr
Match: XP_023530754.1 (E3 ubiquitin-protein ligase RGLG2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 208/432 (48.15%), Postives = 208/432 (48.15%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 181 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 240

[Close]

BLAST of Carg20195 vs. NCBI nr
Match: KAG6587438.1 (E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 208/432 (48.15%), Postives = 208/432 (48.15%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 143 MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 202

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 203 RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 262

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 263 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 322

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 323 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 382

[Close]

BLAST of Carg20195 vs. NCBI nr
Match: XP_022933838.1 (E3 ubiquitin-protein ligase RGLG2-like [Cucurbita moschata])

HSP 1 Score: 319.3 bits (817), Expect = 2.4e-83
Identity = 207/432 (47.92%), Postives = 208/432 (48.15%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 181 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 240

[Close]

BLAST of Carg20195 vs. NCBI nr
Match: XP_022966168.1 (E3 ubiquitin-protein ligase RGLG2-like [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-79
Identity = 201/432 (46.53%), Postives = 203/432 (46.99%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISS RSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSIRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 181 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 240

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BLAST of Carg20195 vs. ExPASy Swiss-Prot
Match: Q9LY87 (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.8e-23
Identity = 80/215 (37.21%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE GQ S QE+KT++AIV+AS                                
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   +R PLPP
Sbjct: 314 NFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPP 373

Query: 200 PRYGPSSQKTSNTSSSC-----TTPPSNGGVAPVRSA---PPLSSVSDDHTCPICITNAK 209
           P  G SS   S   S       + PP       VRS+   PP SS SD+  CPIC++N K
Sbjct: 374 PMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPK 433

[Close]

BLAST of Carg20195 vs. ExPASy Swiss-Prot
Match: Q9SS90 (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 71/208 (34.13%), Postives = 87/208 (41.83%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE G+ S QE+KT++AIVKAS                                
Sbjct: 288 QVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFD 347

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G    R+PLPP
Sbjct: 348 NFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPP 407

Query: 200 PRYGPSSQKTSNTSSSCTTPPSNGGVAPVR-SAPPLSSVSDDHTCPICITNAKDMAFGCG 209
           P       ++ ++ SS   P     V P    +  +SS  D   CPIC++N K+MAFGCG
Sbjct: 408 P------VQSGSSFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCG 467

[Close]

BLAST of Carg20195 vs. ExPASy Swiss-Prot
Match: Q8LB88 (E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 70/213 (32.86%), Postives = 86/213 (40.38%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDT+ G FS QE++TI+AIV+AS                                
Sbjct: 225 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 284

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   DR+ LPP
Sbjct: 285 NFQFVNFTDIMSKNIDPARKEAEFALSALMEIPSQYKATLELGLLGQRTGHCPDRIALPP 344

Query: 200 PRYGPSSQKTSNTSSSCTT----PPSNGGVAPVRSAPPLS--SVSDDHTCPICITNAKDM 209
           P Y   S + S  +S  T+    P  NG    V S PP +  + S    CP+C+ +AK+M
Sbjct: 345 PTYATQSMRNSPRTSRSTSFQNKPYDNG----VSSTPPSTTHNESQQQFCPVCLVSAKNM 404

[Close]

BLAST of Carg20195 vs. ExPASy Swiss-Prot
Match: Q9SAL0 (E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.0e-12
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 140 TPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCGHQTCCECGQDLESCPICRS 199
           TPP+N   A + S    +S     +CPIC+TN KD+AF CGH TC +CG  + +CPICR 
Sbjct: 335 TPPTN---AELPSTASPASPEQTQSCPICLTNRKDVAFSCGHMTCGDCGSKISNCPICRV 394

Query: 200 FIQTRIKLY 209
            I  R+KLY
Sbjct: 395 RITNRLKLY 400

[Close]

BLAST of Carg20195 vs. ExPASy Swiss-Prot
Match: Q8RX26 (E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-11
Identity = 41/91 (45.05%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 118 PLPPPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAF 177
           PLPPP   P   +  N   S     +       R AP    V     CPIC+TN KDMAF
Sbjct: 284 PLPPP---PEVIERDNAVRSVPNQMTETAEKSDRLAPSTVPV-----CPICLTNPKDMAF 343

Query: 178 GCGHQTCCECGQDLESCPICRSFIQTRIKLY 209
            CGH TC ECG  + +CP+CR  I TRI+LY
Sbjct: 344 SCGHTTCKECGVVITTCPLCRQPITTRIRLY 366

[Close]

BLAST of Carg20195 vs. ExPASy TrEMBL
Match: A0A6J1F5Y9 (E3 ubiquitin-protein ligase RGLG2-like OS=Cucurbita moschata OX=3662 GN=LOC111441135 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 207/432 (47.92%), Postives = 208/432 (48.15%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 181 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 240

[Close]

BLAST of Carg20195 vs. ExPASy TrEMBL
Match: A0A6J1HR59 (E3 ubiquitin-protein ligase RGLG2-like OS=Cucurbita maxima OX=3661 GN=LOC111465925 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.8e-79
Identity = 201/432 (46.53%), Postives = 203/432 (46.99%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSKQGSSRYISS RSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA
Sbjct: 1   MGGKSSKQGSSRYISSIRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKRVERKYSRIDDHYNSLD                                         
Sbjct: 61  RKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFSS
Sbjct: 181 SRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSS 240

[Close]

BLAST of Carg20195 vs. ExPASy TrEMBL
Match: A0A6J1C4E0 (E3 ubiquitin-protein ligase RGLG2-like OS=Momordica charantia OX=3673 GN=LOC111007282 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.8e-61
Identity = 180/437 (41.19%), Postives = 189/437 (43.25%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRT--TPQYQFAPPTPGYGGTQAP 60
           MGGKSSK GSSR ISSSRSSSQQ  H+GY ES YAQ R+   PQYQFAP TPGYGG QAP
Sbjct: 1   MGGKSSKHGSSRRISSSRSSSQQRGHYGYQESPYAQSRSEYAPQYQFAPQTPGYGGAQAP 60

Query: 61  GARKRVERKYSRIDDHYNSLD--------------------------------------- 120
            +R+R+ERKYSRIDD+YNSLD                                       
Sbjct: 61  ESRRRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 HHIGDGQNPYEQAITIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPEDRCCNGFEE 180

Query: 181 -----------------------------------------------QVTRSVDTERGQF 209
                                                          QVTRSVDTERGQF
Sbjct: 181 VLSRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGQF 240

[Close]

BLAST of Carg20195 vs. ExPASy TrEMBL
Match: A0A1S3CLK7 (E3 ubiquitin-protein ligase RGLG2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502363 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.8e-60
Identity = 173/432 (40.05%), Postives = 184/432 (42.59%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSK GSSR  SSSRS+SQQW H+GYPES Y Q R+TP+Y  APPTP YGGTQAP  
Sbjct: 1   MGGKSSKHGSSRRNSSSRSNSQQWGHYGYPESPYTQSRSTPRY--APPTPSYGGTQAPET 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKR+ERKYSRIDD+YNSLD                                         
Sbjct: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYSDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFS 
Sbjct: 181 GRYKELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSP 240

[Close]

BLAST of Carg20195 vs. ExPASy TrEMBL
Match: A0A5A7URQ8 (E3 ubiquitin-protein ligase RGLG2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00960 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.8e-60
Identity = 173/432 (40.05%), Postives = 184/432 (42.59%), Query Frame = 0


Query: 1   MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGA 60
           MGGKSSK GSSR  SSSRS+SQQW H+GYPES Y Q R+TP+Y  APPTP YGGTQAP  
Sbjct: 1   MGGKSSKHGSSRRNSSSRSNSQQWGHYGYPESPYTQSRSTPRY--APPTPSYGGTQAPET 60

Query: 61  RKRVERKYSRIDDHYNSLD----------------------------------------- 120
           RKR+ERKYSRIDD+YNSLD                                         
Sbjct: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHH 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYSDERFCNGFEEVL 180

Query: 181 ---------------------------------------------QVTRSVDTERGQFSS 209
                                                        QVTRSVDTERGQFS 
Sbjct: 181 GRYKELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSP 240

[Close]

BLAST of Carg20195 vs. TAIR 10
Match: AT5G14420.1 (RING domain ligase2 )

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-24
Identity = 80/215 (37.21%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE GQ S QE+KT++AIV+AS                                
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   +R PLPP
Sbjct: 314 NFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPP 373

Query: 200 PRYGPSSQKTSNTSSSC-----TTPPSNGGVAPVRSA---PPLSSVSDDHTCPICITNAK 209
           P  G SS   S   S       + PP       VRS+   PP SS SD+  CPIC++N K
Sbjct: 374 PMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPK 433

[Close]

BLAST of Carg20195 vs. TAIR 10
Match: AT5G14420.3 (RING domain ligase2 )

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-24
Identity = 80/215 (37.21%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE GQ S QE+KT++AIV+AS                                
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   +R PLPP
Sbjct: 314 NFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPP 373

Query: 200 PRYGPSSQKTSNTSSSC-----TTPPSNGGVAPVRSA---PPLSSVSDDHTCPICITNAK 209
           P  G SS   S   S       + PP       VRS+   PP SS SD+  CPIC++N K
Sbjct: 374 PMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPK 433

[Close]

BLAST of Carg20195 vs. TAIR 10
Match: AT5G14420.4 (RING domain ligase2 )

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-24
Identity = 80/215 (37.21%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE GQ S QE+KT++AIV+AS                                
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   +R PLPP
Sbjct: 314 NFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPP 373

Query: 200 PRYGPSSQKTSNTSSSC-----TTPPSNGGVAPVRSA---PPLSSVSDDHTCPICITNAK 209
           P  G SS   S   S       + PP       VRS+   PP SS SD+  CPIC++N K
Sbjct: 374 PMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPK 433

[Close]

BLAST of Carg20195 vs. TAIR 10
Match: AT5G14420.2 (RING domain ligase2 )

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-24
Identity = 80/215 (37.21%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE GQ S QE+KT++AIV+AS                                
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G   +R PLPP
Sbjct: 314 NFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPP 373

Query: 200 PRYGPSSQKTSNTSSSC-----TTPPSNGGVAPVRSA---PPLSSVSDDHTCPICITNAK 209
           P  G SS   S   S       + PP       VRS+   PP SS SD+  CPIC++N K
Sbjct: 374 PMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPK 433

[Close]

BLAST of Carg20195 vs. TAIR 10
Match: AT3G01650.1 (RING domain ligase1 )

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-21
Identity = 71/208 (34.13%), Postives = 87/208 (41.83%), Query Frame = 0


Query: 80  QVTRSVDTERGQFSSQEKKTIEAIVKAS-------------------------------- 139
           QVTRSVDTE G+ S QE+KT++AIVKAS                                
Sbjct: 288 QVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFD 347

Query: 140 ----------------------------------------------ASRGKAIDRVPLPP 199
                                                            G    R+PLPP
Sbjct: 348 NFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPP 407

Query: 200 PRYGPSSQKTSNTSSSCTTPPSNGGVAPVR-SAPPLSSVSDDHTCPICITNAKDMAFGCG 209
           P       ++ ++ SS   P     V P    +  +SS  D   CPIC++N K+MAFGCG
Sbjct: 408 P------VQSGSSFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCG 467

The following BLAST results are available for this feature:

BLAST of Carg20195 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021421.1	3.3e-112	100.00	E3 ubiquitin-protein ligase RGLG2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023530754.1	1.1e-83	48.15	E3 ubiquitin-protein ligase RGLG2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6587438.1	1.1e-83	48.15	E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933838.1	2.4e-83	47.92	E3 ubiquitin-protein ligase RGLG2-like [Cucurbita moschata]	[more]
XP_022966168.1	3.6e-79	46.53	E3 ubiquitin-protein ligase RGLG2-like [Cucurbita maxima]	[more]

BLAST of Carg20195 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY87	3.8e-23	37.21	E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 ...	[more]
Q9SS90	1.2e-19	34.13	E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 ...	[more]
Q8LB88	1.4e-17	32.86	E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 ...	[more]
Q9SAL0	4.0e-12	49.28	E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 ...	[more]
Q8RX26	5.7e-11	45.05	E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 ...	[more]

BLAST of Carg20195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5Y9	1.2e-83	47.92	E3 ubiquitin-protein ligase RGLG2-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HR59	1.8e-79	46.53	E3 ubiquitin-protein ligase RGLG2-like OS=Cucurbita maxima OX=3661 GN=LOC1114659...	[more]
A0A6J1C4E0	2.8e-61	41.19	E3 ubiquitin-protein ligase RGLG2-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3CLK7	1.8e-60	40.05	E3 ubiquitin-protein ligase RGLG2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7URQ8	1.8e-60	40.05	E3 ubiquitin-protein ligase RGLG2-like isoform X3 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of Carg20195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14420.1	2.7e-24	37.21	RING domain ligase2	[more]
AT5G14420.3	2.7e-24	37.21	RING domain ligase2	[more]
AT5G14420.4	2.7e-24	37.21	RING domain ligase2	[more]
AT5G14420.2	2.7e-24	37.21	RING domain ligase2	[more]
AT3G01650.1	8.2e-21	34.13	RING domain ligase1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 152..208 e-value: 1.2E-11 score: 45.9
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 162..203 e-value: 1.4E-7 score: 31.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..146
None	No IPR available	PANTHER	PTHR45751:SF29	RING-FINGER PROTEIN	coord: 1..82 coord: 110..208 coord: 80..107
None	No IPR available	PANTHER	PTHR45751	COPINE FAMILY PROTEIN 1	coord: 1..82
None	No IPR available	PANTHER	PTHR45751	COPINE FAMILY PROTEIN 1	coord: 110..208 coord: 80..107
None	No IPR available	CDD	cd16729	RING-HC_RGLG_plant	coord: 165..208 e-value: 3.62787E-23 score: 85.5683
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 156..203
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 165..198 score: 10.92546

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20195-RA	Carg20195-RA	mRNA