Carg20173 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20173
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SWI/SNF complex component SNF12 homolog
Location	Carg_Chr11: 185328 .. 187779 (-)
RNA-Seq Expression	Carg20173
Synteny	Carg20173

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGAATAACAACAACAATGCTAATAGTAACAGTGTGGTGAGGAATATTGGGGGAACTATGCCGGTGAATAACAGCCCTAGTAGTAACAATTTGGGGAGGAATATTGGGGCAGCCTCTCATTTTGGGAATTCAGGCATGGTTCAGCAAGCAAGGCCAATGAATCATCATTCTCAGTCACAGTCTCAAATGCACGGCGGGACGCATTTTTCAGGTCATTTTCAGTTGTCCGAGCCGCAGTCGCGTATAATGTCTCAGGTACAGTATACGCAGGCTCATGCACAGGCACAAGCTCAATCTGCTCATGCACAGTTTCAAGCTCATACTCAACCTGTTCAGCTGCATAGTGCTAAGGCTAGTAATGTTACTATAACACCCTCTGTGTCAACACCTGGGACTGGGAGTTCTAAGAGGCCTACTCAGAAGCCACCTTCTAGGCCTCCAGGATCTTCTAACAGTAGCGCTAGTTCACCTTTTAAAACCATGGAGTTAACTCCAGCTGCTAGAAGAAAGAAGGCTAAGCTTCCTGAGAAACAAATACCCGATAAAGTTGCTGCTCTTCTGCCAGAATCTGCCATCTATACCCGACTGCTCGAAGTTGAGGGTCGGATAGATGCTGCTCTGGCAAGAAAGAAAAATGATATTCAAGAGTCTTTAAAGAATCCTTCGCGCATTCAGAAGACCCTACGGATCTATGTCTTCAATACGTTTGAAAATCAGAATCATAATAGTTCTGATCAGAAGAATGTAGAATCCCCTTCTTGGTCGCTTAAGATAACTGGGAGGATCTTGGAAGATGGAAAAGATCCCGCTATAGCTGGGGACATGCAGAATTATGATTCTACTTACCCAAAATTTTCATCTTTCTTCAAGAAAATCACTATATACTTAGACCAGAGCCTTTATCCAGATAACCACATAATTTTATGGGAGAGTTCTCGTTCTCCTGTTCTGCAAGAGGGATTTGAAGTGAAGAGAAAAGGAGATAAAGAATTTACTGCAGTGATAAGATTGGACATGAATTACACGCCTGAAAAATATCGTCTTTCACCTGCTTTATCAGATGTGCTTGGACTCGAAACAGACACCCGCTCAAGAATTATGGCTGCACTATGGCATTATGTGAAAGCTAACAAGTTGCAGAATTCAAATGATCCTTCTTTCTTCACATGTGATCCAGGTCTACGAAAAGTGTTCGGTGACGAGAAGGTCAAGTTTTCTATGGTATCTCAGAAGATATCGCAACATTTAATTCCTCCACCACCTATAAACTTACAGCATAGAGTTAAGATTTCGGGAAATTCTCCTGTTGGAACTACATGTTATGATGTCGTGGTGGATGTACCGTTTCCAATAGAAAAGCAAATGTCAGCATTCTTGGCAAACCTGGAGAAGCATAAAGATATAGATTCATGTGATGAATTGATTACTACTGCAGTAAAGAAGATTCAAGAGCACTACCAAAGGCGAGCTTTCTTTCTTGGCTTCAGTCAGTCTCCAGCAGAGTTTATCAATACGTTGATATCTTCTCAAACTAAGGATTTAAGGATCGTTGCTGGTGATGCTAGCCGTCTTGCGGAGAAAGAACGTCACTCTAATTTTTACAGTCAATCCTGGTGAGCATAAGTTGTTTCTTGTTTCTACCCTCCTTTCTTGTTTGTTTACTCATATATGTACTTAGAGATCATGCATTGAAATCATGTGATGAATGTTTTTATCCCAAATCAGTTCTACATCATTGTCGAACATCAATATTCTAAAATTTTAGTGATTTTGGCAATGTTTATCAAAATTATGGTGCTTTTTAATTACTGCCAGTGGCAACAATGCCCACTTGATGAATGCTATTTGTGTCTTTTTTTGCTGTACTATTTTCTTTTCGTATACTGGCTAGAGTGACCCGCTTGACTGGATGCCATGTATCTCATGCTCATCAAATTACTGCATAATGGAGTAATATGCACAGATATCTCACATGACAAACTTTTTTAAATGATTGTTTTAATTAGTCGACGAAAATGTGTGTGTTGCATCAGGTTGGAGGATGCTGTGTTTCGGTACCTGAACCGCAAACCTGCTGGAAGTGATGTTCCTGGAAGCGCTTAAAGATCCAAACATTGAATTCGGTGACATCTGTTCTTATATATATCCGCCTTTATTACTTTAGGGGACTGAGTACCTGCAAAACAAATATAGGAATTCTGTATTTGAATACATGGGTAGTTCTTGATTGGGTAACTAATGTTGCAGGGAAAAGTCGTCTTAATTTGACTGCAACTTAGAAATTTCATTTCCAATTTGTACCATTTTTCAGGTAGATGTTAGAATCACAGATGGTTTTGCTTGTCTCAAACTACTTACATTCCAATCTCTGCTTGGTTCTGAATTTGCTTTATACAGAAAACCAACCTAGGCAACTATGTACCCTGTTGTTGTTGTTGTTTTTTTT

mRNA sequence

ATGTCTGTGAATAACAACAACAATGCTAATAGTAACAGTGTGGTGAGGAATATTGGGGGAACTATGCCGGTGAATAACAGCCCTAGTAGTAACAATTTGGGGAGGAATATTGGGGCAGCCTCTCATTTTGGGAATTCAGGCATGGTTCAGCAAGCAAGGCCAATGAATCATCATTCTCAGTCACAGTCTCAAATGCACGGCGGGACGCATTTTTCAGGTCATTTTCAGTTGTCCGAGCCGCAGTCGCGTATAATGTCTCAGGTACAGTATACGCAGGCTCATGCACAGGCACAAGCTCAATCTGCTCATGCACAGTTTCAAGCTCATACTCAACCTGTTCAGCTGCATAGTGCTAAGGCTAGTAATGTTACTATAACACCCTCTGTGTCAACACCTGGGACTGGGAGTTCTAAGAGGCCTACTCAGAAGCCACCTTCTAGGCCTCCAGGATCTTCTAACAGTAGCGCTAGTTCACCTTTTAAAACCATGGAGTTAACTCCAGCTGCTAGAAGAAAGAAGGCTAAGCTTCCTGAGAAACAAATACCCGATAAAGTTGCTGCTCTTCTGCCAGAATCTGCCATCTATACCCGACTGCTCGAAGTTGAGGGTCGGATAGATGCTGCTCTGGCAAGAAAGAAAAATGATATTCAAGAGTCTTTAAAGAATCCTTCGCGCATTCAGAAGACCCTACGGATCTATGTCTTCAATACGTTTGAAAATCAGAATCATAATAGTTCTGATCAGAAGAATGTAGAATCCCCTTCTTGGTCGCTTAAGATAACTGGGAGGATCTTGGAAGATGGAAAAGATCCCGCTATAGCTGGGGACATGCAGAATTATGATTCTACTTACCCAAAATTTTCATCTTTCTTCAAGAAAATCACTATATACTTAGACCAGAGCCTTTATCCAGATAACCACATAATTTTATGGGAGAGTTCTCGTTCTCCTGTTCTGCAAGAGGGATTTGAAGTGAAGAGAAAAGGAGATAAAGAATTTACTGCAGTGATAAGATTGGACATGAATTACACGCCTGAAAAATATCGTCTTTCACCTGCTTTATCAGATGTGCTTGGACTCGAAACAGACACCCGCTCAAGAATTATGGCTGCACTATGGCATTATGTGAAAGCTAACAAGTTGCAGAATTCAAATGATCCTTCTTTCTTCACATGTGATCCAGGTCTACGAAAAGTGTTCGGTGACGAGAAGGTCAAGTTTTCTATGGTATCTCAGAAGATATCGCAACATTTAATTCCTCCACCACCTATAAACTTACAGCATAGAGTTAAGATTTCGGGAAATTCTCCTGTTGGAACTACATGTTATGATGTCGTGGTGGATGTACCGTTTCCAATAGAAAAGCAAATGTCAGCATTCTTGGCAAACCTGGAGAAGCATAAAGATATAGATTCATGTGATGAATTGATTACTACTGCAGTAAAGAAGATTCAAGAGCACTACCAAAGGCGAGCTTTCTTTCTTGGCTTCAGTCAGTCTCCAGCAGAGTTTATCAATACGTTGATATCTTCTCAAACTAAGGATTTAAGGATCGTTGCTGGTGATGCTAGCCGTCTTGCGGAGAAAGAACGTCACTCTAATTTTTACAGTCAATCCTGGTTGGAGGATGCTGTGTTTCGGTACCTGAACCGCAAACCTGCTGGAAGTGATGTTCCTGGAAGCGCTTAAAGATCCAAACATTGAATTCGGTGACATCTGTTCTTATATATATCCGCCTTTATTACTTTAGGGGACTGAGTACCTGCAAAACAAATATAGGAATTCTGTATTTGAATACATGGGTAGTTCTTGATTGGGTAACTAATGTTGCAGGGAAAAGTCGTCTTAATTTGACTGCAACTTAGAAATTTCATTTCCAATTTGTACCATTTTTCAGGTAGATGTTAGAATCACAGATGGTTTTGCTTGTCTCAAACTACTTACATTCCAATCTCTGCTTGGTTCTGAATTTGCTTTATACAGAAAACCAACCTAGGCAACTATGTACCCTGTTGTTGTTGTTGTTTTTTTT

Coding sequence (CDS)

ATGTCTGTGAATAACAACAACAATGCTAATAGTAACAGTGTGGTGAGGAATATTGGGGGAACTATGCCGGTGAATAACAGCCCTAGTAGTAACAATTTGGGGAGGAATATTGGGGCAGCCTCTCATTTTGGGAATTCAGGCATGGTTCAGCAAGCAAGGCCAATGAATCATCATTCTCAGTCACAGTCTCAAATGCACGGCGGGACGCATTTTTCAGGTCATTTTCAGTTGTCCGAGCCGCAGTCGCGTATAATGTCTCAGGTACAGTATACGCAGGCTCATGCACAGGCACAAGCTCAATCTGCTCATGCACAGTTTCAAGCTCATACTCAACCTGTTCAGCTGCATAGTGCTAAGGCTAGTAATGTTACTATAACACCCTCTGTGTCAACACCTGGGACTGGGAGTTCTAAGAGGCCTACTCAGAAGCCACCTTCTAGGCCTCCAGGATCTTCTAACAGTAGCGCTAGTTCACCTTTTAAAACCATGGAGTTAACTCCAGCTGCTAGAAGAAAGAAGGCTAAGCTTCCTGAGAAACAAATACCCGATAAAGTTGCTGCTCTTCTGCCAGAATCTGCCATCTATACCCGACTGCTCGAAGTTGAGGGTCGGATAGATGCTGCTCTGGCAAGAAAGAAAAATGATATTCAAGAGTCTTTAAAGAATCCTTCGCGCATTCAGAAGACCCTACGGATCTATGTCTTCAATACGTTTGAAAATCAGAATCATAATAGTTCTGATCAGAAGAATGTAGAATCCCCTTCTTGGTCGCTTAAGATAACTGGGAGGATCTTGGAAGATGGAAAAGATCCCGCTATAGCTGGGGACATGCAGAATTATGATTCTACTTACCCAAAATTTTCATCTTTCTTCAAGAAAATCACTATATACTTAGACCAGAGCCTTTATCCAGATAACCACATAATTTTATGGGAGAGTTCTCGTTCTCCTGTTCTGCAAGAGGGATTTGAAGTGAAGAGAAAAGGAGATAAAGAATTTACTGCAGTGATAAGATTGGACATGAATTACACGCCTGAAAAATATCGTCTTTCACCTGCTTTATCAGATGTGCTTGGACTCGAAACAGACACCCGCTCAAGAATTATGGCTGCACTATGGCATTATGTGAAAGCTAACAAGTTGCAGAATTCAAATGATCCTTCTTTCTTCACATGTGATCCAGGTCTACGAAAAGTGTTCGGTGACGAGAAGGTCAAGTTTTCTATGGTATCTCAGAAGATATCGCAACATTTAATTCCTCCACCACCTATAAACTTACAGCATAGAGTTAAGATTTCGGGAAATTCTCCTGTTGGAACTACATGTTATGATGTCGTGGTGGATGTACCGTTTCCAATAGAAAAGCAAATGTCAGCATTCTTGGCAAACCTGGAGAAGCATAAAGATATAGATTCATGTGATGAATTGATTACTACTGCAGTAAAGAAGATTCAAGAGCACTACCAAAGGCGAGCTTTCTTTCTTGGCTTCAGTCAGTCTCCAGCAGAGTTTATCAATACGTTGATATCTTCTCAAACTAAGGATTTAAGGATCGTTGCTGGTGATGCTAGCCGTCTTGCGGAGAAAGAACGTCACTCTAATTTTTACAGTCAATCCTGGTTGGAGGATGCTGTGTTTCGGTACCTGAACCGCAAACCTGCTGGAAGTGATGTTCCTGGAAGCGCTTAA

Protein sequence

MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAVFRYLNRKPAGSDVPGSA

Homology

[Close]

BLAST of Carg20173 vs. NCBI nr
Match: XP_022933590.1 (SWI/SNF complex component SNF12 homolog [Cucurbita moschata] >XP_022933591.1 SWI/SNF complex component SNF12 homolog [Cucurbita moschata] >KAG7021399.1 SWI/SNF complex component SNF12-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1095.9 bits (2833), Expect = 0.0e+00
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ
Sbjct: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. NCBI nr
Match: KAG6587416.1 (SWI/SNF complex component SNF12-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1094.7 bits (2830), Expect = 0.0e+00
Identity = 561/562 (99.82%), Postives = 562/562 (100.00%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ
Sbjct: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDV+VDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVMVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. NCBI nr
Match: XP_023531507.1 (SWI/SNF complex component SNF12 homolog [Cucurbita pepo subsp. pepo] >XP_023531508.1 SWI/SNF complex component SNF12 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1090.5 bits (2819), Expect = 0.0e+00
Identity = 560/562 (99.64%), Postives = 560/562 (99.64%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQA TQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQARTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ
Sbjct: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNY PEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYMPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. NCBI nr
Match: XP_022966300.1 (SWI/SNF complex component SNF12 homolog [Cucurbita maxima] >XP_022966310.1 SWI/SNF complex component SNF12 homolog [Cucurbita maxima] >XP_022966318.1 SWI/SNF complex component SNF12 homolog [Cucurbita maxima])

HSP 1 Score: 1085.5 bits (2806), Expect = 0.0e+00
Identity = 557/562 (99.11%), Postives = 558/562 (99.29%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQS HAQFQAHTQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSTHAQFQAHTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QN NSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNY+STYPKFSSFFKKITIYLDQ
Sbjct: 241 QNQNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYNSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFS VSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSTVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRR FFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRTFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. NCBI nr
Match: XP_022135164.1 (SWI/SNF complex component SNF12 homolog [Momordica charantia] >XP_022135165.1 SWI/SNF complex component SNF12 homolog [Momordica charantia])

HSP 1 Score: 969.5 bits (2505), Expect = 1.2e-278
Identity = 496/565 (87.79%), Postives = 524/565 (92.74%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHH-- 60
           M++NNN++ANSNSVVRN+G TMPVNNSPS NNLGRN+GAASHFGNSG+V Q RPMNHH  
Sbjct: 1   MAMNNNSSANSNSVVRNVGATMPVNNSPSINNLGRNVGAASHFGNSGVVPQTRPMNHHAH 60

Query: 61  --SQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLH 120
             SQSQ Q+  G+HF GHFQLSEPQ   MSQ+QY+Q HAQA+AQS HAQFQ +TQPVQLH
Sbjct: 61  LISQSQPQIQSGSHFQGHFQLSEPQVHTMSQIQYSQVHAQARAQSVHAQFQTNTQPVQLH 120

Query: 121 SAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKL 180
           SA ASNV + PSVST GTGSSKRPTQKPPSRPPGSSN+ A S FKTMELTPAARRKKAKL
Sbjct: 121 SANASNVNMPPSVSTTGTGSSKRPTQKPPSRPPGSSNTGAGSLFKTMELTPAARRKKAKL 180

Query: 181 PEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFN 240
           PEKQIPD VAALLPESAIYT+LLEVEGRIDAALARKKNDI+ESLKNPSRIQKTLRIYVFN
Sbjct: 181 PEKQIPDNVAALLPESAIYTQLLEVEGRIDAALARKKNDIRESLKNPSRIQKTLRIYVFN 240

Query: 241 TFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITI 300
           TFENQN NSSDQKNV+S SWSLKI GRILEDGKDP IA  MQ Y+STYPKFSSFFKKITI
Sbjct: 241 TFENQNQNSSDQKNVQSSSWSLKIIGRILEDGKDPVIAKAMQKYNSTYPKFSSFFKKITI 300

Query: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 360
           YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLD+NYTPEK+RLSPALSD
Sbjct: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDVNYTPEKFRLSPALSD 360

Query: 361 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 420
           VLG+ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFG+EKVKFS VSQKISQ
Sbjct: 361 VLGIETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGEEKVKFSTVSQKISQ 420

Query: 421 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480
           HLIPP PINLQHRV+ISGN P GTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL
Sbjct: 421 HLIPPQPINLQHRVRISGNCPTGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480

Query: 481 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 540
           IT AVKKI EHY+RRAFFLGFSQSPAEFINTLI+SQ+KDL+I AGDASRLAEKERHSNFY
Sbjct: 481 ITAAVKKIHEHYRRRAFFLGFSQSPAEFINTLITSQSKDLKIAAGDASRLAEKERHSNFY 540

Query: 541 SQSWLEDAVFRYLNRKPAGSDVPGS 562
           SQSWLEDAV RYLNRKPAGSDVPGS
Sbjct: 541 SQSWLEDAVIRYLNRKPAGSDVPGS 565

[Close]

BLAST of Carg20173 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 1.1e-168
Identity = 313/544 (57.54%), Postives = 408/544 (75.00%), Query Frame = 0


Query: 27  SPSSNNLGRNIGAAS-HFGNSGMVQQARPMNHHSQSQSQMHGGTHFSGHFQLSEPQSRIM 86
           S ++NN  +  G+A   FGN GM   + P N   Q  +Q H   +F   FQ S+ Q+   
Sbjct: 2   SGNNNNPQKPQGSAPLPFGNPGMASASVPGN---QGFAQSHMAANFQAQFQFSQAQA--- 61

Query: 87  SQVQYTQAHAQAQAQ-SAHAQFQAHTQPVQLHSAKASN-----VTITPSVSTPGTGSSKR 146
                  AHAQAQ++  A  Q Q   Q + ++ A+ S         +PS++TPG+ + KR
Sbjct: 62  ------LAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKR 121

Query: 147 PTQKPPSRPPGS-SNSSASSPFKTMELTPAARRKKAKLPEKQIPDKVAALLPESAIYTRL 206
             QKPP RPPG+ ++++  SP +TMELTPAAR+KK KLPEK + ++VAA+LPESA+YT+L
Sbjct: 122 FQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQL 181

Query: 207 LEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSSDQKNVESPSWSL 266
           LE E R+DAAL RKK DIQE+LKNP  IQKTLRIYVFN+F NQN+      N + P+W+L
Sbjct: 182 LEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTL 241

Query: 267 KITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQSLYPDNHIILWESSRSPV 326
           KI GRILEDG DP   G +Q  +  +PKFSSFFK++T+ LDQ LYP+N +I+WE++RSP 
Sbjct: 242 KIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPA 301

Query: 327 LQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKA 386
            QEGFE+KRKG++EF A IRL+MNY PEK++LS AL DVLG+E +TR RI+AA+WHYVKA
Sbjct: 302 PQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKA 361

Query: 387 NKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPINLQHRVKISGNSPV 446
            KLQN NDPSFF CD  L+KVFG+EK+KF+MVSQKIS HL PPPPI+L+H++K+SGN+P 
Sbjct: 362 RKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPA 421

Query: 447 GTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQEHYQRRAFFLGFS 506
            + CYDV+VDVPFPI++ ++  LAN EK+K+I++CDE I  A++KI EH +RRAFFLGFS
Sbjct: 422 VSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFS 481

Query: 507 QSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAVFRYLNRKP-AGSD 562
           QSP EFIN LI SQ+KDL++VAG+ASR AE+ER S+F++Q W+EDAV RYLNR+P AG+D
Sbjct: 482 QSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGND 533

[Close]

BLAST of Carg20173 vs. ExPASy Swiss-Prot
Match: Q9VYG2 (Brahma-associated protein of 60 kDa OS=Drosophila melanogaster OX=7227 GN=Bap60 PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.3e-70
Identity = 168/462 (36.36%), Postives = 254/462 (54.98%), Query Frame = 0


Query: 110 TQPVQLHSAKASNVTITPSV-STPGTGSSKRPTQKP----PSRPPGS------------- 169
           TQPV   +A  + V   P V   PG    +R  Q+P      R  G+             
Sbjct: 47  TQPVP-GTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSGGGSKR 106

Query: 170 SNSSASSPFKTMELTPAARRKKAKLPEKQIPDKVAALLPESAIYTRLLEVEGRIDAALAR 229
           SN S S      +   A  +KK KL EK +P KV  L+PES  Y  LL  E ++DA + R
Sbjct: 107 SNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMR 166

Query: 230 KKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSSDQKNVESPSWSLKITGRILEDGKDP 289
           K+ DIQE+LK P + ++ LRI++ NTF      ++D +     SW L++ GR+LEDGK  
Sbjct: 167 KRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGK-- 226

Query: 290 AIAGDMQNYDSTYPKFSSFFKKITIYLDQSLY-PDNHIILWESSRSPVLQEGFEVKRKGD 349
              GD         KFSSFFK + I LD+ LY PDNH++ W  + +    +GF+VKR GD
Sbjct: 227 ---GDPNT--KIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGD 286

Query: 350 KEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSNDPSFF 409
           +     I L ++Y P +++L P L+ +LG+ T TR  I++ALW Y+K +KLQ++++  + 
Sbjct: 287 RNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYI 346

Query: 410 TCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVP 469
            CD  L ++F  +++KF+ + Q+++  L PP PI + H ++ SG     T CYD+ V+V 
Sbjct: 347 NCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIE-SGAENKQTACYDIDVEVD 406

Query: 470 FPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLIS 529
             ++ QM++FL +    ++I   D  I   V  I +    R FFL F++ P  FI+  I 
Sbjct: 407 DTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHRWII 466

Query: 530 SQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAVFRYLNRK 553
           S+T+DL+++  D +   E+ER + FY Q W  +AV RY   K
Sbjct: 467 SETRDLKLMT-DVAGNPEEERRAEFYYQPWTHEAVSRYFFTK 498

[Close]

BLAST of Carg20173 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.7e-70
Identity = 151/436 (34.63%), Postives = 244/436 (55.96%), Query Frame = 0


Query: 127 PSVSTPGTGSSKRPTQKPPSRPPGSSNS---SASSPFKTMELTPAARR----KKAKLPEK 186
           PS+  PG G +  P+ +P     G   S    A    K ++      R    KK K+ +K
Sbjct: 74  PSMGPPGYGGN--PSVRPGLAQSGMDQSLKRPAPQQIKQVQQQAVQNRNHNAKKKKMADK 133

Query: 187 QIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFE 246
            +P ++  L+PES  Y  LL  E ++D  + RK+ DIQE+LK P + ++ LRI++ NTF 
Sbjct: 134 ILPQRIRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFN 193

Query: 247 NQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYP--KFSSFFKKITIY 306
               ++ D +   + SW L++ GR+LED         +  YD+T    KFSSFFK + I 
Sbjct: 194 PAKSDAEDGEGTVA-SWELRVEGRLLEDSA-------LSKYDATKQKRKFSSFFKSLVIE 253

Query: 307 LDQSLY-PDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 366
           LD+ LY PDNH++ W  + +    +GF+VKR GD      + L ++Y P +++L P L+ 
Sbjct: 254 LDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLAR 313

Query: 367 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 426
           +LG+ T TR  I+ ALW Y+K +KLQ+ ++  F  CD  L+++F  +++KFS + Q++  
Sbjct: 314 LLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHA 373

Query: 427 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 486
            L+PP PI + H + +  N    T CYD+  +V   ++ QM++FL +    ++I + D  
Sbjct: 374 LLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNK 433

Query: 487 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 546
           I   ++ I +   +R F L F++ P  FIN  + SQ +DL+++  D    +E+ER + FY
Sbjct: 434 IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEERRAEFY 493

Query: 547 SQSWLEDAVFRYLNRK 553
            Q W ++AV RY   K
Sbjct: 494 FQPWAQEAVCRYFYSK 498

[Close]

BLAST of Carg20173 vs. ExPASy Swiss-Prot
Match: Q96GM5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens OX=9606 GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 266.2 bits (679), Expect = 8.7e-70
Identity = 151/436 (34.63%), Postives = 244/436 (55.96%), Query Frame = 0


Query: 127 PSVSTPGTGSSKRPTQKPPSRPPGSSNS-SASSPFKTMELTPAA------RRKKAKLPEK 186
           PS+  PG G +  P+ +P     G   S    +P +  ++   A        KK K+ +K
Sbjct: 74  PSMGPPGYGGN--PSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADK 133

Query: 187 QIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFE 246
            +P ++  L+PES  Y  LL  E ++D  + RK+ DIQE+LK P + ++ LRI++ NTF 
Sbjct: 134 ILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFN 193

Query: 247 NQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYP--KFSSFFKKITIY 306
               ++ D +   + SW L++ GR+LED         +  YD+T    KFSSFFK + I 
Sbjct: 194 PAKSDAEDGEGTVA-SWELRVEGRLLEDSA-------LSKYDATKQKRKFSSFFKSLVIE 253

Query: 307 LDQSLY-PDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 366
           LD+ LY PDNH++ W  + +    +GF+VKR GD      + L ++Y P +++L P L+ 
Sbjct: 254 LDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLAR 313

Query: 367 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 426
           +LG+ T TR  I+ ALW Y+K +KLQ+ ++  F  CD  L+++F  +++KFS + Q++  
Sbjct: 314 LLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHA 373

Query: 427 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 486
            L+PP PI + H + +  N    T CYD+ V+V   ++ QM++FL +    ++I + D  
Sbjct: 374 LLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNK 433

Query: 487 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 546
           I   ++ I +   +R F L F++ P  FIN  + SQ +DL+ +  D     E+ER + FY
Sbjct: 434 IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFY 493

Query: 547 SQSWLEDAVFRYLNRK 553
            Q W ++AV RY   K
Sbjct: 494 FQPWAQEAVCRYFYSK 498

[Close]

BLAST of Carg20173 vs. ExPASy Swiss-Prot
Match: Q61466 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus OX=10090 GN=Smarcd1 PE=1 SV=3)

HSP 1 Score: 266.2 bits (679), Expect = 8.7e-70
Identity = 151/436 (34.63%), Postives = 244/436 (55.96%), Query Frame = 0


Query: 127 PSVSTPGTGSSKRPTQKPPSRPPGSSNS-SASSPFKTMELTPAA------RRKKAKLPEK 186
           PS+  PG G +  P+ +P     G   S    +P +  ++   A        KK K+ +K
Sbjct: 74  PSMGPPGYGGN--PSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADK 133

Query: 187 QIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFE 246
            +P ++  L+PES  Y  LL  E ++D  + RK+ DIQE+LK P + ++ LRI++ NTF 
Sbjct: 134 ILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFN 193

Query: 247 NQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYP--KFSSFFKKITIY 306
               ++ D +   + SW L++ GR+LED         +  YD+T    KFSSFFK + I 
Sbjct: 194 PAKSDAEDGEGTVA-SWELRVEGRLLEDAA-------LSKYDATKQKRKFSSFFKSLVIE 253

Query: 307 LDQSLY-PDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 366
           LD+ LY PDNH++ W  + +    +GF+VKR GD      + L ++Y P +++L P L+ 
Sbjct: 254 LDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLAR 313

Query: 367 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 426
           +LG+ T TR  I+ ALW Y+K +KLQ+ ++  F  CD  L+++F  +++KFS + Q++  
Sbjct: 314 LLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHA 373

Query: 427 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 486
            L+PP PI + H + +  N    T CYD+ V+V   ++ QM++FL +    ++I + D  
Sbjct: 374 LLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNK 433

Query: 487 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 546
           I   ++ I +   +R F L F++ P  FIN  + SQ +DL+ +  D     E+ER + FY
Sbjct: 434 IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFY 493

Query: 547 SQSWLEDAVFRYLNRK 553
            Q W ++AV RY   K
Sbjct: 494 FQPWAQEAVCRYFYSK 498

[Close]

BLAST of Carg20173 vs. ExPASy TrEMBL
Match: A0A6J1EZH8 (SWI/SNF complex component SNF12 homolog OS=Cucurbita moschata OX=3662 GN=LOC111440973 PE=4 SV=1)

HSP 1 Score: 1095.9 bits (2833), Expect = 0.0e+00
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ
Sbjct: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. ExPASy TrEMBL
Match: A0A6J1HR99 (SWI/SNF complex component SNF12 homolog OS=Cucurbita maxima OX=3661 GN=LOC111466000 PE=4 SV=1)

HSP 1 Score: 1085.5 bits (2806), Expect = 0.0e+00
Identity = 557/562 (99.11%), Postives = 558/562 (99.29%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60
           MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
Sbjct: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ 60

Query: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLHSAKA 120
           SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQS HAQFQAHTQPVQLHSAKA
Sbjct: 61  SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSTHAQFQAHTQPVQLHSAKA 120

Query: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180
           SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
Sbjct: 121 SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ 180

Query: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240
           IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
Sbjct: 181 IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN 240

Query: 241 QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ 300
           QN NSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNY+STYPKFSSFFKKITIYLDQ
Sbjct: 241 QNQNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYNSTYPKFSSFFKKITIYLDQ 300

Query: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360
           SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL
Sbjct: 301 SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGL 360

Query: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 420
           ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFS VSQKISQHLIP
Sbjct: 361 ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSTVSQKISQHLIP 420

Query: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480
           PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
Sbjct: 421 PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA 480

Query: 481 VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540
           VKKIQEHYQRR FFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
Sbjct: 481 VKKIQEHYQRRTFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW 540

Query: 541 LEDAVFRYLNRKPAGSDVPGSA 563
           LEDAVFRYLNRKPAGSDVPGSA
Sbjct: 541 LEDAVFRYLNRKPAGSDVPGSA 562

[Close]

BLAST of Carg20173 vs. ExPASy TrEMBL
Match: A0A6J1C0P2 (SWI/SNF complex component SNF12 homolog OS=Momordica charantia OX=3673 GN=LOC111007199 PE=4 SV=1)

HSP 1 Score: 969.5 bits (2505), Expect = 5.9e-279
Identity = 496/565 (87.79%), Postives = 524/565 (92.74%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHH-- 60
           M++NNN++ANSNSVVRN+G TMPVNNSPS NNLGRN+GAASHFGNSG+V Q RPMNHH  
Sbjct: 1   MAMNNNSSANSNSVVRNVGATMPVNNSPSINNLGRNVGAASHFGNSGVVPQTRPMNHHAH 60

Query: 61  --SQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLH 120
             SQSQ Q+  G+HF GHFQLSEPQ   MSQ+QY+Q HAQA+AQS HAQFQ +TQPVQLH
Sbjct: 61  LISQSQPQIQSGSHFQGHFQLSEPQVHTMSQIQYSQVHAQARAQSVHAQFQTNTQPVQLH 120

Query: 121 SAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKL 180
           SA ASNV + PSVST GTGSSKRPTQKPPSRPPGSSN+ A S FKTMELTPAARRKKAKL
Sbjct: 121 SANASNVNMPPSVSTTGTGSSKRPTQKPPSRPPGSSNTGAGSLFKTMELTPAARRKKAKL 180

Query: 181 PEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFN 240
           PEKQIPD VAALLPESAIYT+LLEVEGRIDAALARKKNDI+ESLKNPSRIQKTLRIYVFN
Sbjct: 181 PEKQIPDNVAALLPESAIYTQLLEVEGRIDAALARKKNDIRESLKNPSRIQKTLRIYVFN 240

Query: 241 TFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITI 300
           TFENQN NSSDQKNV+S SWSLKI GRILEDGKDP IA  MQ Y+STYPKFSSFFKKITI
Sbjct: 241 TFENQNQNSSDQKNVQSSSWSLKIIGRILEDGKDPVIAKAMQKYNSTYPKFSSFFKKITI 300

Query: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 360
           YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLD+NYTPEK+RLSPALSD
Sbjct: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDVNYTPEKFRLSPALSD 360

Query: 361 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 420
           VLG+ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFG+EKVKFS VSQKISQ
Sbjct: 361 VLGIETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGEEKVKFSTVSQKISQ 420

Query: 421 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480
           HLIPP PINLQHRV+ISGN P GTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL
Sbjct: 421 HLIPPQPINLQHRVRISGNCPTGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480

Query: 481 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 540
           IT AVKKI EHY+RRAFFLGFSQSPAEFINTLI+SQ+KDL+I AGDASRLAEKERHSNFY
Sbjct: 481 ITAAVKKIHEHYRRRAFFLGFSQSPAEFINTLITSQSKDLKIAAGDASRLAEKERHSNFY 540

Query: 541 SQSWLEDAVFRYLNRKPAGSDVPGS 562
           SQSWLEDAV RYLNRKPAGSDVPGS
Sbjct: 541 SQSWLEDAVIRYLNRKPAGSDVPGS 565

[Close]

BLAST of Carg20173 vs. ExPASy TrEMBL
Match: A0A1S3BZU6 (SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495394 PE=4 SV=1)

HSP 1 Score: 923.3 bits (2385), Expect = 4.8e-265
Identity = 478/566 (84.45%), Postives = 512/566 (90.46%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHH-- 60
           MSV NNN+ NSNS VRN+G T+ VNNS SSNNLGRN+  A HFGNSGMV Q RP+NHH  
Sbjct: 1   MSV-NNNSVNSNSAVRNVGATISVNNSSSSNNLGRNV-VAPHFGNSGMVPQTRPLNHHGH 60

Query: 61  --SQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLH 120
             SQ Q Q+H G+HFSGHFQLSEPQ+R MS VQYTQAHAQAQAQSAHA FQAHTQPVQLH
Sbjct: 61  LLSQPQPQIHSGSHFSGHFQLSEPQTRTMSHVQYTQAHAQAQAQSAHAHFQAHTQPVQLH 120

Query: 121 SAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKL 180
           SA A +   TPS+STPGTG+SKRPTQKPPSR  G+S + A+SPFKTMELTPA RRKK KL
Sbjct: 121 SANAGS---TPSISTPGTGNSKRPTQKPPSRSAGNSYTIATSPFKTMELTPAPRRKKVKL 180

Query: 181 PEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFN 240
           PEKQIPDKVAALLPESAIYT+LLEVEGRIDAALARKKNDIQESLKNP R+QKTLRIYVFN
Sbjct: 181 PEKQIPDKVAALLPESAIYTKLLEVEGRIDAALARKKNDIQESLKNPPRVQKTLRIYVFN 240

Query: 241 TFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITI 300
           TFENQN + SDQKNVESPSWSLKITGRILEDG+DP I G MQNYDSTYPKFSSFFKKIT+
Sbjct: 241 TFENQNQSGSDQKNVESPSWSLKITGRILEDGQDPVITGAMQNYDSTYPKFSSFFKKITV 300

Query: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 360
           YLDQSLYPDNH ILWE +RSP LQEGFEVKRKGDKEFTAVIRLDMN+TPEK+RLSP+LSD
Sbjct: 301 YLDQSLYPDNHTILWEGARSPALQEGFEVKRKGDKEFTAVIRLDMNHTPEKFRLSPSLSD 360

Query: 361 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 420
           VLG+ TDTRSRIMAALWHYVKANKLQNS+DPSF TCDPGLRKVFG+EKVKFSMVSQKISQ
Sbjct: 361 VLGIGTDTRSRIMAALWHYVKANKLQNSSDPSFITCDPGLRKVFGEEKVKFSMVSQKISQ 420

Query: 421 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480
           HLIPP PINLQHRVKISGNSPVGTTCYDV+VDVPFPIEKQMSAFLANLEK KDIDSCDEL
Sbjct: 421 HLIPPQPINLQHRVKISGNSPVGTTCYDVMVDVPFPIEKQMSAFLANLEKPKDIDSCDEL 480

Query: 481 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 540
           I+ AVKKI EH +RR+FFLGFSQSPA+FIN LISSQTKDL+IVAGDAS  AEKERHSNFY
Sbjct: 481 ISAAVKKIHEHSRRRSFFLGFSQSPADFINNLISSQTKDLKIVAGDASHHAEKERHSNFY 540

Query: 541 SQSWLEDAVFRYLNRKPAGSDVPGSA 563
           SQSW+EDAV RYLNRKPA S+VP SA
Sbjct: 541 SQSWVEDAVIRYLNRKPATSEVPRSA 561

[Close]

BLAST of Carg20173 vs. ExPASy TrEMBL
Match: A0A5A7SJY6 (SWI/SNF complex component SNF12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002140 PE=4 SV=1)

HSP 1 Score: 889.8 bits (2298), Expect = 5.9e-255
Identity = 461/544 (84.74%), Postives = 493/544 (90.62%), Query Frame = 0


Query: 1   MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHH-- 60
           MSV NNN+ NSNS VRN+G T+ VNNS SSNNLGRN+  A HFGNSGMV Q RP+NHH  
Sbjct: 1   MSV-NNNSVNSNSAVRNVGATISVNNSSSSNNLGRNV-VAPHFGNSGMVPQTRPLNHHGH 60

Query: 61  --SQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQAHTQPVQLH 120
             SQ Q Q+H G+HFSGHFQLSEPQ+R MS VQYTQAHAQAQAQSAHA FQAHTQPVQLH
Sbjct: 61  LLSQPQPQIHSGSHFSGHFQLSEPQTRTMSHVQYTQAHAQAQAQSAHAHFQAHTQPVQLH 120

Query: 121 SAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKL 180
           SA A +   TPS+STPGTG+SKRPTQKPPSR  G+S + A+SPFKTMELTPA RRKK KL
Sbjct: 121 SANAGS---TPSISTPGTGNSKRPTQKPPSRSAGNSYTIATSPFKTMELTPAPRRKKVKL 180

Query: 181 PEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFN 240
           PEKQIPDKVAALLPESAIYT+LLEVEGRIDAALARKKNDIQESLKNP R+QKTLRIYVFN
Sbjct: 181 PEKQIPDKVAALLPESAIYTKLLEVEGRIDAALARKKNDIQESLKNPPRVQKTLRIYVFN 240

Query: 241 TFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITI 300
           TFENQN + SDQKNVESPSWSLKITGRILEDG+DP I G MQNYDSTYPKFSSFFKKIT+
Sbjct: 241 TFENQNQSGSDQKNVESPSWSLKITGRILEDGQDPVITGAMQNYDSTYPKFSSFFKKITV 300

Query: 301 YLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSD 360
           YLDQSLYPDNH ILWE +RSP LQEGFEVKRKGDKEFTAVIRLDMN+TPEK+RLSP+LSD
Sbjct: 301 YLDQSLYPDNHTILWEGARSPALQEGFEVKRKGDKEFTAVIRLDMNHTPEKFRLSPSLSD 360

Query: 361 VLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQ 420
           VLG+ TDTRSRIMAALWHYVKANKLQNS+DPSF TCDPGLRKVFG+EKVKFSMVSQKISQ
Sbjct: 361 VLGIGTDTRSRIMAALWHYVKANKLQNSSDPSFITCDPGLRKVFGEEKVKFSMVSQKISQ 420

Query: 421 HLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDEL 480
           HLIPP PINLQHRVKISGNSPVGTTCYDV+VDVPFPIEKQMSAFLANLEK KDIDSCDEL
Sbjct: 421 HLIPPQPINLQHRVKISGNSPVGTTCYDVMVDVPFPIEKQMSAFLANLEKPKDIDSCDEL 480

Query: 481 ITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFY 540
           I+ AVKKI EH +RR+FFLGFSQSPA+FIN LISSQTKDL+IVAGDAS  AEKERHSNFY
Sbjct: 481 ISAAVKKIHEHSRRRSFFLGFSQSPADFINNLISSQTKDLKIVAGDASHHAEKERHSNFY 539

[Close]

BLAST of Carg20173 vs. TAIR 10
Match: AT5G14170.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 594.7 bits (1532), Expect = 7.5e-170
Identity = 313/544 (57.54%), Postives = 408/544 (75.00%), Query Frame = 0


Query: 27  SPSSNNLGRNIGAAS-HFGNSGMVQQARPMNHHSQSQSQMHGGTHFSGHFQLSEPQSRIM 86
           S ++NN  +  G+A   FGN GM   + P N   Q  +Q H   +F   FQ S+ Q+   
Sbjct: 2   SGNNNNPQKPQGSAPLPFGNPGMASASVPGN---QGFAQSHMAANFQAQFQFSQAQA--- 61

Query: 87  SQVQYTQAHAQAQAQ-SAHAQFQAHTQPVQLHSAKASN-----VTITPSVSTPGTGSSKR 146
                  AHAQAQ++  A  Q Q   Q + ++ A+ S         +PS++TPG+ + KR
Sbjct: 62  ------LAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKR 121

Query: 147 PTQKPPSRPPGS-SNSSASSPFKTMELTPAARRKKAKLPEKQIPDKVAALLPESAIYTRL 206
             QKPP RPPG+ ++++  SP +TMELTPAAR+KK KLPEK + ++VAA+LPESA+YT+L
Sbjct: 122 FQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQL 181

Query: 207 LEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSSDQKNVESPSWSL 266
           LE E R+DAAL RKK DIQE+LKNP  IQKTLRIYVFN+F NQN+      N + P+W+L
Sbjct: 182 LEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTL 241

Query: 267 KITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQSLYPDNHIILWESSRSPV 326
           KI GRILEDG DP   G +Q  +  +PKFSSFFK++T+ LDQ LYP+N +I+WE++RSP 
Sbjct: 242 KIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPA 301

Query: 327 LQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKA 386
            QEGFE+KRKG++EF A IRL+MNY PEK++LS AL DVLG+E +TR RI+AA+WHYVKA
Sbjct: 302 PQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKA 361

Query: 387 NKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPINLQHRVKISGNSPV 446
            KLQN NDPSFF CD  L+KVFG+EK+KF+MVSQKIS HL PPPPI+L+H++K+SGN+P 
Sbjct: 362 RKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPA 421

Query: 447 GTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQEHYQRRAFFLGFS 506
            + CYDV+VDVPFPI++ ++  LAN EK+K+I++CDE I  A++KI EH +RRAFFLGFS
Sbjct: 422 VSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFS 481

Query: 507 QSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAVFRYLNRKP-AGSD 562
           QSP EFIN LI SQ+KDL++VAG+ASR AE+ER S+F++Q W+EDAV RYLNR+P AG+D
Sbjct: 482 QSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGND 533

[Close]

BLAST of Carg20173 vs. TAIR 10
Match: AT3G01890.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 496.5 bits (1277), Expect = 2.8e-140
Identity = 254/430 (59.07%), Postives = 316/430 (73.49%), Query Frame = 0


Query: 129 VSTPGTG-SSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEK-QIPDKVA 188
           +S PG     K P   PP+ PP            +MELTPA+R+KK KLP+K  + ++VA
Sbjct: 50  ISAPGRRFPHKPPIGGPPAVPP------------SMELTPASRKKKHKLPDKSSLQERVA 109

Query: 189 ALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSS 248
           A+LPESA+YT+LLE E R+DAAL RKK DIQ+SLKNP  IQKTLRIYVFNTF NQ     
Sbjct: 110 AVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKNPPSIQKTLRIYVFNTFSNQ----- 169

Query: 249 DQKNVESPSWSLKITGRILEDGKDPAIAGDM-QNYDSTYPKFSSFFKKITIYLDQSLYPD 308
                + P+W+L+I GR+L    DP   G + QN +  YPKFSSFFK + I LDQSLYP+
Sbjct: 170 -IPGPDPPTWTLRIFGRVL----DPDHTGGLVQNSNPLYPKFSSFFKTLKISLDQSLYPE 229

Query: 309 NHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTR 368
           NH+I W+  RSP   EGFE+KR G +EF A I L+MNY PEK++ SPAL  VLG+E DTR
Sbjct: 230 NHLIEWKRDRSPAPLEGFEIKRIGCQEFAATILLEMNYVPEKFKTSPALMQVLGIEVDTR 289

Query: 369 SRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPIN 428
            RI+AA+WHYVK  KLQN NDPSFF CD  L  VFG+EK+KF+M+S KISQHL PPPPI 
Sbjct: 290 PRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTMLSHKISQHLSPPPPIQ 349

Query: 429 LQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQ 488
           L H++K+SGN+P  + CYDV+VD+P P++ ++S  LAN EK+K+I++CDE I  A++KI 
Sbjct: 350 LVHKIKLSGNNPAISACYDVLVDIPAPVQTELSNLLANPEKNKEIEACDEAICGAIRKIH 409

Query: 489 EHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAV 548
           EH +RRAFFLGFSQSP EF N L+ SQTKDL++VAG+ASR AEKE  S F++Q W+EDA 
Sbjct: 410 EHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAGEASRNAEKEGRSEFFNQPWVEDAA 457

Query: 549 FRYLNRKPAG 556
            RYLNRKPAG
Sbjct: 470 IRYLNRKPAG 457

[Close]

BLAST of Carg20173 vs. TAIR 10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-07
Identity = 28/95 (29.47%), Postives = 44/95 (46.32%), Query Frame = 0


Query: 326 KRKGDKEFTAVIRLDMNYTPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSN 385
           KRKG   F  V             LSP L    G+    R+ ++  LW Y+K N LQ+ N
Sbjct: 257 KRKGGGGFAKVC-----------SLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPN 316

Query: 386 DPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP 421
           D     CD   R +F  E +    +++++++H+ P
Sbjct: 317 DKRSIICDESFRSLFPVESINMFQMNKQLTKHIWP 340

[Close]

BLAST of Carg20173 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 22/71 (30.99%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 350 LSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVF-GDEKVKFS 409
           +S A+ DV+G+    R++ +  +W Y+K + LQ+  +     CD  L+K+F G E+V F 
Sbjct: 74  VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133

Query: 410 MVSQKISQHLI 420
            +++ I  H +
Sbjct: 134 EIAKLIGPHFL 144

[Close]

BLAST of Carg20173 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 5.9e-05
Identity = 20/71 (28.17%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 350 LSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVF-GDEKVKFS 409
           +SP + D++ L    R++ +  +W Y+K + LQ+  +     CD  L+K+F G ++V F 
Sbjct: 71  VSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130

Query: 410 MVSQKISQHLI 420
            +++ I  H +
Sbjct: 131 EIAKLIGPHFL 141

The following BLAST results are available for this feature:

BLAST of Carg20173 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933590.1	0.0e+00	100.00	SWI/SNF complex component SNF12 homolog [Cucurbita moschata] >XP_022933591.1 SWI...	[more]
KAG6587416.1	0.0e+00	99.82	SWI/SNF complex component SNF12-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_023531507.1	0.0e+00	99.64	SWI/SNF complex component SNF12 homolog [Cucurbita pepo subsp. pepo] >XP_0235315...	[more]
XP_022966300.1	0.0e+00	99.11	SWI/SNF complex component SNF12 homolog [Cucurbita maxima] >XP_022966310.1 SWI/S...	[more]
XP_022135164.1	1.2e-278	87.79	SWI/SNF complex component SNF12 homolog [Momordica charantia] >XP_022135165.1 SW...	[more]

BLAST of Carg20173 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMT4	1.1e-168	57.54	SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]
Q9VYG2	2.3e-70	36.36	Brahma-associated protein of 60 kDa OS=Drosophila melanogaster OX=7227 GN=Bap60 ...	[more]
Q2TBN1	8.7e-70	34.63	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q96GM5	8.7e-70	34.63	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q61466	8.7e-70	34.63	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Carg20173 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZH8	0.0e+00	100.00	SWI/SNF complex component SNF12 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HR99	0.0e+00	99.11	SWI/SNF complex component SNF12 homolog OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1C0P2	5.9e-279	87.79	SWI/SNF complex component SNF12 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3BZU6	4.8e-265	84.45	SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495394 ...	[more]
A0A5A7SJY6	5.9e-255	84.74	SWI/SNF complex component SNF12-like protein OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Carg20173 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14170.1	7.5e-170	57.54	SWIB/MDM2 domain superfamily protein	[more]
AT3G01890.1	2.8e-140	59.07	SWIB/MDM2 domain superfamily protein	[more]
AT3G19080.1	2.8e-07	29.47	SWIB complex BAF60b domain-containing protein	[more]
AT4G34290.1	1.2e-05	30.99	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	5.9e-05	28.17	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 344..423 e-value: 1.4E-15 score: 67.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 347..418 e-value: 7.0E-23 score: 80.3
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 343..420 score: 22.405313
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 340..426 e-value: 1.7E-27 score: 97.2
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 338..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..141
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 110..558
None	No IPR available	PANTHER	PTHR13844:SF49	SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG	coord: 110..558
None	No IPR available	CDD	cd10568	SWIB_like	coord: 350..418 e-value: 1.52987E-29 score: 109.16

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20173-RA	Carg20173-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016514	SWI/SNF complex