Carg20139 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20139
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 12260007 .. 12260508 (-)
RNA-Seq ExpressionCarg20139
SyntenyCarg20139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGGTCATGCATGTCCAAGACGTGTTGTCAATGGCCGACGACATCCCGAGACTCGGGATGGCGCCAAGACATGAACCATGTCGATGGGGATCAAGATGACAAGATGAGATGCGGCGTTGCATTGAGAGACCTTGGTCCCGAGCAGAGGCAAGGTTGAGCCAAATGACTTGGCCTGGTGTAGAGGCAAGTCGGATGTGTCCTACATTTGGTGGCTTTATCGGACCTTAGGCGAGGTTTGTCTTCGCCAATCGAACATCGCTCGTGTGGAATCCAAGCTTGTTCAATCACACACGCCGCCTACGCATGTATGTTCAATCGTCTGTAACACATTCGACTTGCCTCTGCACCAGGCCAAGTCATTCGGCTCGACTTTGCCTTTGCTCGGGGCTAAGGTCTCTCAATGCAACGTCGCATCTCATCTTGTCATCTCAATCCCCATTGACATGGTTCATAGGTCTTGGTGCAATCTCGATTCTTGGGATGTCGTCGTCCATTGA

mRNA sequence

ATGTCAGGGTCATGCATGTCCAAGACGTGTTGTCAATGGCCGACGACATCCCGAGACTCGGGATGGCGCCAAGACATGAACCATGTCGATGGGGATCAAGATGACAAGATGAGATGCGGCGTTGCATTGAGAGACCTTGGTCCCGAGCAGAGGCAAGGCGAGGTTTGTCTTCGCCAATCGAACATCGCTCGTGTGGAATCCAAGCTTGTTCAATCACACACGCCGCCTACGCATGTATGTTCAATCGTCTGTAACACATTCGACTTGCCTCTGCACCAGGCCAAGTCATTCGGCTCGACTTTGCCTTTGCTCGGGGCTAAGGTCTCTCAATGCAACGTCGCATCTCATCTTGTCATCTCAATCCCCATTGACATGGTTCATAGGTCTTGGTGCAATCTCGATTCTTGGGATGTCGTCGTCCATTGA

Coding sequence (CDS)

ATGTCAGGGTCATGCATGTCCAAGACGTGTTGTCAATGGCCGACGACATCCCGAGACTCGGGATGGCGCCAAGACATGAACCATGTCGATGGGGATCAAGATGACAAGATGAGATGCGGCGTTGCATTGAGAGACCTTGGTCCCGAGCAGAGGCAAGGCGAGGTTTGTCTTCGCCAATCGAACATCGCTCGTGTGGAATCCAAGCTTGTTCAATCACACACGCCGCCTACGCATGTATGTTCAATCGTCTGTAACACATTCGACTTGCCTCTGCACCAGGCCAAGTCATTCGGCTCGACTTTGCCTTTGCTCGGGGCTAAGGTCTCTCAATGCAACGTCGCATCTCATCTTGTCATCTCAATCCCCATTGACATGGTTCATAGGTCTTGGTGCAATCTCGATTCTTGGGATGTCGTCGTCCATTGA

Protein sequence

MSGSCMSKTCCQWPTTSRDSGWRQDMNHVDGDQDDKMRCGVALRDLGPEQRQGEVCLRQSNIARVESKLVQSHTPPTHVCSIVCNTFDLPLHQAKSFGSTLPLLGAKVSQCNVASHLVISIPIDMVHRSWCNLDSWDVVVH
Homology
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BLAST of Carg20139 vs. NCBI nr
Match: KAG7018643.1 (hypothetical protein SDJN02_20513, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 4.6e-78
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 1   MSGSCMSKTCCQWPTTSRDSGWRQDMNHVDGDQDDKMRCGVALRDLGPEQRQGEVCLRQS 60
           MSGSCMSKTCCQWPTTSRDSGWRQDMNHVDGDQDDKMRCGVALRDLGPEQRQGEVCLRQS
Sbjct: 1   MSGSCMSKTCCQWPTTSRDSGWRQDMNHVDGDQDDKMRCGVALRDLGPEQRQGEVCLRQS 60

Query: 61  NIARVESKLVQSHTPPTHVCSIVCNTFDLPLHQAKSFGSTLPLLGAKVSQCNVASHLVIS 120
           NIARVESKLVQSHTPPTHVCSIVCNTFDLPLHQAKSFGSTLPLLGAKVSQCNVASHLVIS
Sbjct: 61  NIARVESKLVQSHTPPTHVCSIVCNTFDLPLHQAKSFGSTLPLLGAKVSQCNVASHLVIS 120

Query: 121 IPIDMVHRSWCNLDSWDVVVH 142
           IPIDMVHRSWCNLDSWDVVVH
Sbjct: 121 IPIDMVHRSWCNLDSWDVVVH 141

The following BLAST results are available for this feature:
BLAST of Carg20139 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018643.14.6e-78100.00hypothetical protein SDJN02_20513, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20139 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20139-RACarg20139-RAmRNA