Carg20118 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20118
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 12148841 .. 12149140 (+)
RNA-Seq ExpressionCarg20118
SyntenyCarg20118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTATTTGTTCAATTAGCTTCTTCCTCTTGGACGGTTCGTTCCGCCATTGAAGAGTCTCTGAGAATTCTTTTGGCGCCAAAGGTTCGTGCTCTATCTCTCTACGAGGGAAAATAGTAATCGGTAATCATGAAGATGAACAATCGTGGAAATACATATGGTTTAATGAAAAATTTAGGAAGTTTAGATGAGATGCCATTATTCATATTGAAATTTCTACGAAATTTGCAGGCTATTGATGGAATATCTGGCCCAAACGCTCCGCAATGCTGCGTCAATTCGTTACAATACAGTTTGTGA

mRNA sequence

TTATTATTTGTTCAATTAGCTTCTTCCTCTTGGACGGTTCGTTCCGCCATTGAAGAGTCTCTGAGAATTCTTTTGGCGCCAAAGGCTATTGATGGAATATCTGGCCCAAACGCTCCGCAATGCTGCGTCAATTCGTTACAATACAGTTTGTGA

Coding sequence (CDS)

TTATTATTTGTTCAATTAGCTTCTTCCTCTTGGACGGTTCGTTCCGCCATTGAAGAGTCTCTGAGAATTCTTTTGGCGCCAAAGGCTATTGATGGAATATCTGGCCCAAACGCTCCGCAATGCTGCGTCAATTCGTTACAATACAGTTTGTGA

Protein sequence

LLFVQLASSSWTVRSAIEESLRILLAPKAIDGISGPNAPQCCVNSLQYSL
Homology
[Close]
BLAST of Carg20118 vs. NCBI nr
Match: KAG7018622.1 (hypothetical protein SDJN02_20492, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  LLFVQLASSSWTVRSAIEESLRILLAPKAIDGISGPNAPQCCVNSLQYSL 51
          LLFVQLASSSWTVRSAIEESLRILLAPKAIDGISGPNAPQCCVNSLQYSL
Sbjct: 1  LLFVQLASSSWTVRSAIEESLRILLAPKAIDGISGPNAPQCCVNSLQYSL 50

[Close]
BLAST of Carg20118 vs. NCBI nr
Match: KAG6582223.1 (NADH-ubiquinone oxidoreductase chain 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 7  ASSSWTVRSAIEESLRILLAPKAIDGISGPNAPQCCVNSLQYSL 51
          ASSSWTVRSAIEESLRILLAPKAIDGISGPN PQCCVNSLQYSL
Sbjct: 43 ASSSWTVRSAIEESLRILLAPKAIDGISGPNDPQCCVNSLQYSL 86

The following BLAST results are available for this feature:
BLAST of Carg20118 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018622.13.3e-18100.00hypothetical protein SDJN02_20492, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582223.11.3e-1497.73NADH-ubiquinone oxidoreductase chain 2, partial [Cucurbita argyrosperma subsp. s... [more]
BLAST of Carg20118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20118 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20118 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20118-RACarg20118-RAmRNA