Carg20094 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20094
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 4036229 .. 4038958 (+)
RNA-Seq ExpressionCarg20094
SyntenyCarg20094
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACCCTCCGGCCTCCATTCTTCTTCCATCTGCTGTTCTTCATTTCGCGGTGCTCTTTAAGCATTCTAATCGATGTAATTGTTTCATTTTAAATTTCTTCCTTTCTGCGTATGTTCTCCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCTCTGGCGTGCAAATCTCATCTGTGAGTGAAAAATACTGATGATTGATACTCCTTTCTACGATCGTCTCTTCTATTTATGATTGATATTGTTTCCATTAAGGTCTTGGTTGTTTTCTTTGTCATCTTATTTCGCAGGAGTGTTTTGTTTTTGTTATGATTCATTAGTTTTTAGTGAGTGCTAAATCTATACGACGTTATAGGTAATGTAGCCAGCTCATTGGCCTCTGGTTTTACTCGGCCATTGGCGAGCATTTGGATCCTCACTTGATTTTCCTCTGGAAGGACCTGCAGGTTGGAGCATTTTTTTCTGTTTCTTTTGATTTTCACATCATGTGGCCTCTAACCGTAAACTTAATCATCTACCTGATTTTGTCATGTTCTTTGCTTCTCTTTATTGAATATTGTTACCTGATTTTGTCACTGCTCGCACATGTTCCCATTTCAGTTTGTGGATCAACATGGGATTTCATAGAGAATTTCTGCGTTGCCGATTTGCTAAAGATGGGCATGATCTTGATTCTTTCATACTTTGGTGAGTGAAACAATTACGTTTTTGTGTATGTCAGTCCCTTGGTATTTGTAATATGCTGGAATCTCTCTGTTTTCCATGTTCCCATTTCAGCTTAAAATCTTGCATATACAAGCACTCTTAGTTTACATCTGCATAATATTTTATTACAACCAAAGATATAAAACCAAAGCTATGGGGTTTATCGACTAATCCTTGATGTTGATGTCGAACCCTTCGATTTCTGGATATATCGACGGATATTTAATCATTGATTACAACTATTGATGTTCTATTAACTTCCTAATGTACCGGTGGTTGTAAATTGTCATAAGTTCTTTATTTAATTTAGTTATTAACTCTCATCAATTTATATCGGAATTTGATAGAGTTTTGTGTTTCACATTACATTTTTTGAGTGACATTTTGGTGAGAGTCTTTGTAGGGTAAGAGTAAGAGTGAGGTATTCACTTGTAACACCTTGATTATTAGTGATTGGTTGCTACCCGTGGATGTAGGAGAATTTTTTCTCTCCGAACCACGTAAATATTTTGGTATCTCTCTGTATAATTCCGTGCATTGTGGTTGTGAGTACATTCGTTCTGCTTTCGCTACAACAATCGGTATCATAGTTTCGTGGTTGTAGCATTTGGCGCACAACACCGGACCCGCTTTTTTTTTTTTTTTTTTTTTTTGTAGAACATTTCTAGTTCAATAGTTGAAGCTAATTTGATATGGTATGGAAGCATGCAATTGTTTCTTCTACGTTTTGAAATGTATAGTTCATTTCTCTCAACATTTATCTGTCAAATTAAAGTTGCTAGCATCAATAACTTACTGGTATAATGATAATGGCAATTAAGTTCATTTGTGAGTTGTAAAGAAGAATAGGTTCGTACATCTCCTATGCATGTATTGCCATTTATTTGGCTCATAACCCTTTTGGTTATCTTCCATTGTGATATATGAATCATCTTGATTCATGTATAACATTAATATTACTATGCCTGTATAAAGGTTTGTCTATCATTGTTTTGAAGTGTGGAGTTATTGTCATTTTGTATTTGCTTAGAGGCAATTAGGAGGAACTTTGTAAGAGAGACTTTGTAGCGTGAGAATGACAGAGATACACTTGTTAACATTTTAGTTACCGTGATTAGCTACCACCCGTGGATGTAAGAGAATTTCTTCTGTCCGAACTACGTAAATCTTTGTCTCTTTGTTTAATTTCTGTTTGTGGGTGTGTGAGTGCAATCGATTTTGCTTCACTTCCGCTACAACAATAATGATAATGGCAACTAAGTTCATATGGTATGGGAAGATGCAGCTATTTTCCGTGTTATGGTATGTGGTAACATCTAGTTATCAGATCGAAGTTGGTTATGACTTACTGATGTAATTGTAATGGGATTTGGGAATACAATCTACTGTTTGTCCCCTAATAATGCCTTTTACTTCTTTACCTGGTATGACTCTAAATCATAGGCTCACAAGATCAAAAGAAACTTCTTCGGAAAGGGATCCAAATCCAGTTTAGATGTTTTAGTTACAAGCGATGGTGAGAATTTATGTGCATTTTTGTTTGTTGATTATTACATAGAACATTAGTTCAATGCTTGAATCTGCTCTTTCTTTTGGGGATTGTATGCAGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGGTGAACGATATGGACTTGTTTAGCTTGCCATTGTCAAAAGAACAAGAAGGCAGGCACTTTAGAAGAAAGGACCTGGAAGAAAAGTTTGAAAGTGAAGAAGGAAAACATCGGCATGGGGTCAACAAGCGATTCGAGCAATTTCCCCAAACGTGTCGAGTCGAGAACTAGCAGACGGGTGTCTCGTAGATAGATGAGGAACCACAGAGGTTTTGAAGTGAGAAAGTCATCGAGCTCGAAAAGTCATGGAATTCGAGTTAAGGAATAGTAGAGTGTTGGTCTATGGTAAGCACAGAAGAAAATCTGTTAAGGTTGGGATTCATTTGAATGAGATTCATAGCTTGGGTGTTAGA

mRNA sequence

ATGAAACACCCTCCGGCCTCCATTCTTCTTCCATCTGCTGTTCTTCATTTCGCGGTGCTCTTTAAGCATTCTAATCGATGTAATTGTTTCATTTTAAATTTCTTCCTTTCTGCGTATGTTCTCCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCTCTGGCGTGCAAATCTCATCTCCAGCTCATTGGCCTCTGGTTTTACTCGGCCATTGGCGAGCATTTGGATCCTCACTTGATTTTCCTCTGGAAGGACCTGCAGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGGTGAACGATATGGACTTGTTTAGCTTGCCATTGTCAAAAGAACAAGAAGGCAGGCACTTTAGAAGAAAGGACCTGGAAGAAAAGTTTGAAAGTGAAGAAGGAAAACATCGGCATGGGGTCAACAAGCGATTCGAGCAATTTCCCCAAACGTGTCGAGTCGAGAACTAGCAGACGGGTGTCTCGTAGATAGATGAGGAACCACAGAGGTTTTGAAGTGAGAAAGTCATCGAGCTCGAAAAGTCATGGAATTCGAGTTAAGGAATAGTAGAGTGTTGGTCTATGGTAAGCACAGAAGAAAATCTGTTAAGGTTGGGATTCATTTGAATGAGATTCATAGCTTGGGTGTTAGA

Coding sequence (CDS)

ATGAAACACCCTCCGGCCTCCATTCTTCTTCCATCTGCTGTTCTTCATTTCGCGGTGCTCTTTAAGCATTCTAATCGATGTAATTGTTTCATTTTAAATTTCTTCCTTTCTGCGTATGTTCTCCGAAATCGATTATCCGATCAAGCTTCTTCGATCGCTCTGGCGTGCAAATCTCATCTCCAGCTCATTGGCCTCTGGTTTTACTCGGCCATTGGCGAGCATTTGGATCCTCACTTGATTTTCCTCTGGAAGGACCTGCAGGTATTTTACTCCTATGTTTATTACATAAAATTGGCGTCTTCGGCTGCATCGGTCGGGGTCGGGGTGAACGATATGGACTTGTTTAGCTTGCCATTGTCAAAAGAACAAGAAGGCAGGCACTTTAGAAGAAAGGACCTGGAAGAAAAGTTTGAAAGTGAAGAAGGAAAACATCGGCATGGGGTCAACAAGCGATTCGAGCAATTTCCCCAAACGTGTCGAGTCGAGAACTAG

Protein sequence

MKHPPASILLPSAVLHFAVLFKHSNRCNCFILNFFLSAYVLRNRLSDQASSIALACKSHLQLIGLWFYSAIGEHLDPHLIFLWKDLQVFYSYVYYIKLASSAASVGVGVNDMDLFSLPLSKEQEGRHFRRKDLEEKFESEEGKHRHGVNKRFEQFPQTCRVEN
Homology
[Close]
BLAST of Carg20094 vs. NCBI nr
Match: KAG7024742.1 (hypothetical protein SDJN02_13560, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.3 bits (843), Expect = 1.8e-86
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MKHPPASILLPSAVLHFAVLFKHSNRCNCFILNFFLSAYVLRNRLSDQASSIALACKSHL 60
           MKHPPASILLPSAVLHFAVLFKHSNRCNCFILNFFLSAYVLRNRLSDQASSIALACKSHL
Sbjct: 1   MKHPPASILLPSAVLHFAVLFKHSNRCNCFILNFFLSAYVLRNRLSDQASSIALACKSHL 60

Query: 61  QLIGLWFYSAIGEHLDPHLIFLWKDLQVFYSYVYYIKLASSAASVGVGVNDMDLFSLPLS 120
           QLIGLWFYSAIGEHLDPHLIFLWKDLQVFYSYVYYIKLASSAASVGVGVNDMDLFSLPLS
Sbjct: 61  QLIGLWFYSAIGEHLDPHLIFLWKDLQVFYSYVYYIKLASSAASVGVGVNDMDLFSLPLS 120

Query: 121 KEQEGRHFRRKDLEEKFESEEGKHRHGVNKRFEQFPQTCRVEN 164
           KEQEGRHFRRKDLEEKFESEEGKHRHGVNKRFEQFPQTCRVEN
Sbjct: 121 KEQEGRHFRRKDLEEKFESEEGKHRHGVNKRFEQFPQTCRVEN 163

The following BLAST results are available for this feature:
BLAST of Carg20094 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024742.11.8e-86100.00hypothetical protein SDJN02_13560, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg20094 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20094 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20094 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20094-RACarg20094-RAmRNA