Carg20092 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20092
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 4025433 .. 4026414 (+)
RNA-Seq ExpressionCarg20092
SyntenyCarg20092
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTGGAATTGTAGCAACTCCAAACGAATTTGAGTTGCATTCCTTCCACAATCTTACAATTTATTAGGTTTATGTGGGGATCTTGGAGTGCTAAAGACTATCAGAATCGGTTTCAAGCTAATTCAAGCATTTTCAATTTGGAATTACCACAACAAGATTAATTCAATTGGTTTCCTTCCAGTTTTTCATCATTTGTTCCTAGTTATTGATAAATCTTCGACAAATTCAATTAGAAGCTGAGATTCTTACCTGAAGTCAGTTTCGAGAGAGATCCCACCGAGTCTGTTCGTAGGTCTCCTCCGCCAGAAAACGTCTGGAAGCTCAATATGGATGCTTCTTGGAACGTTTCGCTCGATCGTGGTTCATTACTCCGCTGGTTCATCGATCTGCGCTGCCTCAAAAGAGCTCAAGAAAGCTTGGTCGATTCATGCTCTTGAAGCTGCTTGGATTCTTGAGAGGTTATCCTCCATTGTTGATAATTTCAACGCTCACACGATACCTATTGTGATTGAATCGGATTCCTCAAAGACAATTAATCTCCTGAATGAGGTTGAGGTTGATTTAACTGAGACAAAAAGAAAAAGAAAAAACCTCATCAATGAGATCTCAGCGTCGGTCGTGTTTTTGTGCAGGGATTGCCATTTGGAGACTCCGTTGCGGTGGTCGGTTACCAGCTCGAGGTCGATTCCGCCGTTCTGAAATTCTGTTTCGCCGTCGCCACCATCGTTCTCGTCCTACCAGTGATACCGAGCGGGCCGGGTTTGGGCTATTTTATTGGGCCCAAAAGATCATGGGCTTTAAGAGAAAGTGGGCTGAAGTATAGGCCTAGATGTCGCGTGGGCTTGGTTTTGGGCTTTTTTGTTTAACCCATTTGAAGCATAGAGATTTACAACGAAACCCATCCAATTTGAGTACCTCCACATGATAAAGTAGTTCCACACCTTAATTTTGACCTCTCATTGACCTTAATTATTGACCTC

mRNA sequence

TTCTTTGGAATTGTAGCAACTCCAAACGAATTTGAGTTGCATTCCTTCCACAATCTTACAATTTATTAGGTTTATGTGGGGATCTTGGAGTGCTAAAGACTATCAGAATCGGTTTCAAGCTAATTCAAGCATTTTCAATTTGGAATTACCACAACAAGATTAATTCAATTGGTTTCCTTCCAGTTTTTCATCATTTGTTCCTAGTTATTGATAAATCTTCGACAAATTCAATTAGAAGCTGAGATTCTTACCTGAAGTCAGTTTCGAGAGAGATCCCACCGAGTCTGTTCGTAGGTCTCCTCCGCCAGAAAACGTCTGGAAGCTCAATATGGATGCTTCTTGGAACGTTTCGCTCGATCGTGGTTCATTACTCCGCTGGTTCATCGATCTGCGCTGCCTCAAAAGAGCTCAAGAAAGCTTGGTCGATTCATGCTCTTGAAGCTGCTTGGATTCTTGAGAGGTTATCCTCCATTGTTGATAATTTCAACGCTCACACGATACCTATTGTGATTGAATCGGATTCCTCAAAGACAATTAATCTCCTGAATGAGGGATTGCCATTTGGAGACTCCGTTGCGGTGGTCGGTTACCAGCTCGAGGTCGATTCCGCCGTTCTGAAATTCTGTTTCGCCGTCGCCACCATCGTTCTCGTCCTACCAGTGATACCGAGCGGGCCGGGTTTGGGCTATTTTATTGGGCCCAAAAGATCATGGGCTTTAAGAGAAAGTGGGCTGAAGTATAGGCCTAGATGTCGCGTGGGCTTGGTTTTGGGCTTTTTTGTTTAACCCATTTGAAGCATAGAGATTTACAACGAAACCCATCCAATTTGAGTACCTCCACATGATAAAGTAGTTCCACACCTTAATTTTGACCTCTCATTGACCTTAATTATTGACCTC

Coding sequence (CDS)

ATGCTTCTTGGAACGTTTCGCTCGATCGTGGTTCATTACTCCGCTGGTTCATCGATCTGCGCTGCCTCAAAAGAGCTCAAGAAAGCTTGGTCGATTCATGCTCTTGAAGCTGCTTGGATTCTTGAGAGGTTATCCTCCATTGTTGATAATTTCAACGCTCACACGATACCTATTGTGATTGAATCGGATTCCTCAAAGACAATTAATCTCCTGAATGAGGGATTGCCATTTGGAGACTCCGTTGCGGTGGTCGGTTACCAGCTCGAGGTCGATTCCGCCGTTCTGAAATTCTGTTTCGCCGTCGCCACCATCGTTCTCGTCCTACCAGTGATACCGAGCGGGCCGGGTTTGGGCTATTTTATTGGGCCCAAAAGATCATGGGCTTTAAGAGAAAGTGGGCTGAAGTATAGGCCTAGATGTCGCGTGGGCTTGGTTTTGGGCTTTTTTGTTTAA

Protein sequence

MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAWILERLSSIVDNFNAHTIPIVIESDSSKTINLLNEGLPFGDSVAVVGYQLEVDSAVLKFCFAVATIVLVLPVIPSGPGLGYFIGPKRSWALRESGLKYRPRCRVGLVLGFFV
Homology
[Close]
BLAST of Carg20092 vs. NCBI nr
Match: KAG6591873.1 (hypothetical protein SDJN03_14219, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024740.1 hypothetical protein SDJN02_13558 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-77
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAWILERLSSIVDNFNAHTIPIVI 60
           MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAWILERLSSIVDNFNAHTIPIVI
Sbjct: 1   MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAWILERLSSIVDNFNAHTIPIVI 60

Query: 61  ESDSSKTINLLNEGLPFGDSVAVVGYQLEVDSAVLKFCFAVATIVLVLPVIPSGPGLGYF 120
           ESDSSKTINLLNEGLPFGDSVAVVGYQLEVDSAVLKFCFAVATIVLVLPVIPSGPGLGYF
Sbjct: 61  ESDSSKTINLLNEGLPFGDSVAVVGYQLEVDSAVLKFCFAVATIVLVLPVIPSGPGLGYF 120

Query: 121 IGPKRSWALRESGLKYRPRCRVGLVLGFFV 151
           IGPKRSWALRESGLKYRPRCRVGLVLGFFV
Sbjct: 121 IGPKRSWALRESGLKYRPRCRVGLVLGFFV 150

[Close]
BLAST of Carg20092 vs. NCBI nr
Match: XP_023535970.1 (uncharacterized protein LOC111797246 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 129/135 (95.56%), Postives = 129/135 (95.56%), Query Frame = 0 

Query: 1   MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAWILERLSSIVDNFNAHTIPIVI 60
           MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAA ILERLSSIVDNFNAHTIPIVI
Sbjct: 1   MLLGTFRSIVVHYSAGSSICAASKELKKAWSIHALEAAVILERLSSIVDNFNAHTIPIVI 60

Query: 61  ESDSSKTINLLNEGLPFGDSVAVVGYQLEVDSAVLKFCFAVATIVLVLPVIPSGPGLGYF 120
           ESDSSK INLLNEGLP GDSVAVVGYQ EVDSAVL FCFAVATIVLVLPVIPSGPGLGYF
Sbjct: 61  ESDSSKIINLLNEGLPVGDSVAVVGYQFEVDSAVLNFCFAVATIVLVLPVIPSGPGLGYF 120

Query: 121 IGPKRSWALRESGLK 136
           IGPKR WALRESGLK
Sbjct: 121 IGPKRPWALRESGLK 135

The following BLAST results are available for this feature:
BLAST of Carg20092 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591873.15.5e-77100.00hypothetical protein SDJN03_14219, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023535970.11.7e-6295.56uncharacterized protein LOC111797246 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg20092 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20092 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20092 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20092-RACarg20092-RAmRNA