Carg20075 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg20075
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 3933769 .. 3935695 (-)
RNA-Seq ExpressionCarg20075
SyntenyCarg20075
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTGATTGGGCCCTTTAGCGCGCCGCCTCCTTCCAATGGCAGCCGAGCCTATGGTGGACCCTCCATTAATGAGAACCAAGAGGGCCGCGCCAACAAATACTCCGTCTTTGACCAAATAGCATTCTCCTTCCACCCACCCCTTCCCATACTCTTGTCTCCTGCTCATGCTGGTTGCTCCCATCATCATCGCCACCGCAATTCCGAAGCTGACCCTGGTATTTCATTTTATTTACCATTTTAGCCTCTGTTTATTATTATTATTTTTTTTACCTAAATATATGATTTAATATTGAAGGGCGTTTTCAATTTATTCCATATTAAAACTTTTTTTAATTTATTCTTCAATGTTGGTTACATTTTTCAGTTAGATAGTTGAAATTGGTTCATTATAATCTTATATAAGATTGGTTGAGTTGATTGAGTTGAGACTTACGAAAGAATTATTAGAAAAATTATACTAGCTAAGAAAATTTATAATCCTTTTTCTAAGGTTATTTAAGTGCTTTAATTCATATCTATGCAACTTGCTAAGAATAGTTTTTCTTATAAGTTTACCTGACATTTGTGAAAGGACACATTGAAAATATTAAAACATAAAAGGCTGAACGGAAAGACTTCTTTTCGTTTTACTTTTACCACTATTTAAAGAATCGTTATGGTCGTAAGGTAAGTTTTAAAATTACTGTATGCCTTTCTTTTTTGAAAATATTACTTTATTCTTGAAATAATTCTCTCGTACTATAATTGTTTTATTAATAATAATATTGTTGTCTAGTAATTAATTAGATCATGGATCCCATGTATAGGAATCCGAAACACCTCAAAGCTGGCCACGTTCCTTCAGCATATTATCTTTTTAGTTTCCTCTCTCCCTCCAGTGACCAGCTCTGCTATTCCTTTTATAATTCATTAATTGAATTTCTCTAACTTTTTTTCTGAAAGTTGTCTAAAAATTTGAGCACAGTAACAATAAATACCAAAAAGGGTTACTGTTACTACCAAAATTTCCCCAAATGAACCGAGAAATACAGAAAAAAAAGGAAAGAAAGAAGATTATTATGAAGAAACAATTACTTACCAAGAAATGAGAAGGGTGGTTGAAAGCAGAGGCCTTTTGACACTGCAACTCTTTCTGTGCTCTTTTGGCCAATAGGTGTGGCAGATTATGGTGTTTCCGATGATATGAGCCATTATTAAACAGACTATACCTGCGACTCCCAATTTGAATGCTTCACTTTCAGGCAGGAAGCAGAATCTGCCGTTCAACTTCAGGTCCTTTTTCTACAATATATTCGGATTATGATGTTCGAGGAAGCTTTAATTTGTACGAAGAATTAATATTGTAAATGGGAAAGAAATTGAAAGAAACTTACTTTTGTTCTGTTGAATTCAGCAGCCATACATGATGCGAAGGAGGCGAGGGTGAGGACGGCGACAATGGAAAAGCTTATCACGAAACTGGAAGGAGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGCAGTGGGAGTTTAAATCACGGGACAAGACCCTTGGAGGTTAGTGGTGGAAAATTCATCATTTTCTCTCTTGACTTGTGAAAGTCGAGACTTTTTTCGAATCAAATCTCTCGTTTTTCATCTTCATCACTGGTCAAATACGAGGGAAGGGGGAGAGAGAGGGAGAGAGAAAGAGAGAATTTTCCAACAAAAAATTGGAAGAAGATAATAAAATCTCAATTGGACGAAAATTTGAATATCTTTTCTTTTTAACCAATTAAACAATGTTTAGGTTCACAAATTGTATGTTGGACTCCGAATATTTTGCAGTAATTTATTCTTTTTTTCTGACTTTGAAGGTACACCCTTCCCCATATACCGGTTTATCCGAAACTTATCAAACACTGGAAAAGGATTGAAGTCCCACCATATGGAAAGCCAATAG

mRNA sequence

ATGTACTTGATTGGGCCCTTTAGCGCGCCGCCTCCTTCCAATGGCAGCCGAGCCTATGGTGGACCCTCCATTAATGAGAACCAAGAGGGCCGCGCCAACAAATACTCCGTCTTTGACCAAATAGCATTCTCCTTCCACCCACCCCTTCCCATACTCTTGTCTCCTGCTCATGCTGGTTGCTCCCATCATCATCGCCACCGCAATTCCGAAGCTGACCCTGCAGCCATACATGATGCGAAGGAGGCGAGGGTGAGGACGGCGACAATGGAAAAGCTTATCACGAAACTGGAAGGAGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGCAGTGGGAGTTTAAATCACGGGACAAGACCCTTGGAGGTACACCCTTCCCCATATACCGGTTTATCCGAAACTTATCAAACACTGGAAAAGGATTGAAGTCCCACCATATGGAAAGCCAATAG

Coding sequence (CDS)

ATGTACTTGATTGGGCCCTTTAGCGCGCCGCCTCCTTCCAATGGCAGCCGAGCCTATGGTGGACCCTCCATTAATGAGAACCAAGAGGGCCGCGCCAACAAATACTCCGTCTTTGACCAAATAGCATTCTCCTTCCACCCACCCCTTCCCATACTCTTGTCTCCTGCTCATGCTGGTTGCTCCCATCATCATCGCCACCGCAATTCCGAAGCTGACCCTGCAGCCATACATGATGCGAAGGAGGCGAGGGTGAGGACGGCGACAATGGAAAAGCTTATCACGAAACTGGAAGGAGGCTTTTCCATGGCGGCCAGAAGATCGAAGAAGCAGTGGGAGTTTAAATCACGGGACAAGACCCTTGGAGGTACACCCTTCCCCATATACCGGTTTATCCGAAACTTATCAAACACTGGAAAAGGATTGAAGTCCCACCATATGGAAAGCCAATAG

Protein sequence

MYLIGPFSAPPPSNGSRAYGGPSINENQEGRANKYSVFDQIAFSFHPPLPILLSPAHAGCSHHHRHRNSEADPAAIHDAKEARVRTATMEKLITKLEGGFSMAARRSKKQWEFKSRDKTLGGTPFPIYRFIRNLSNTGKGLKSHHMESQ
Homology
[Close]
BLAST of Carg20075 vs. NCBI nr
Match: KAG7024723.1 (hypothetical protein SDJN02_13541, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MYLIGPFSAPPPSNGSRAYGGPSINENQEGRANKYSVFDQIAFSFHPPLPILLSPAHAGC 60
           MYLIGPFSAPPPSNGSRAYGGPSINENQEGRANKYSVFDQIAFSFHPPLPILLSPAHAGC
Sbjct: 1   MYLIGPFSAPPPSNGSRAYGGPSINENQEGRANKYSVFDQIAFSFHPPLPILLSPAHAGC 60

Query: 61  SHHHRHRNSEADPAAIHDAKEARVRTATMEKLITKLEGGFSMAARRSKKQWEFKSRDKTL 120
           SHHHRHRNSEADPAAIHDAKEARVRTATMEKLITKLEGGFSMAARRSKKQWEFKSRDKTL
Sbjct: 61  SHHHRHRNSEADPAAIHDAKEARVRTATMEKLITKLEGGFSMAARRSKKQWEFKSRDKTL 120

Query: 121 GGTPFPIYRFIRNLSNTGKGLKSHHMESQ 150
           GGTPFPIYRFIRNLSNTGKGLKSHHMESQ
Sbjct: 121 GGTPFPIYRFIRNLSNTGKGLKSHHMESQ 149

[Close]
BLAST of Carg20075 vs. NCBI nr
Match: KAE8649397.1 (hypothetical protein Csa_011845 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-04
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 0 

Query: 1  MYLIGPFS-----APPPSNGSRAYGGPSINENQEGRANKYSVFDQIAFSFHPPLPIL 53
          MYLIG F+      PP  NG    GG S+NENQ G   K SVFDQIAFS HP L I+
Sbjct: 25 MYLIGWFNNMVGPPPPHPNGRGGDGGASVNENQYGGGYKDSVFDQIAFSLHPSLRIM 81

The following BLAST results are available for this feature:
BLAST of Carg20075 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024723.16.9e-80100.00hypothetical protein SDJN02_13541, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8649397.12.1e-0456.14hypothetical protein Csa_011845 [Cucumis sativus][more]
BLAST of Carg20075 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20075 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg20075 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20075-RACarg20075-RAmRNA