Carg20052 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg20052
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SR45-like
Location	Carg_Chr09: 3772616 .. 3779076 (-)
RNA-Seq Expression	Carg20052
Synteny	Carg20052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGGTCCATTCGGTTCCGTACGAATACGTTTCGACCATTTCTGTGTCGCTTTTCTCTTCATTATCTCTAAATCCCAAACGAGACGGGTTTAAGTTAGGGTTTCAAATTTCGCTCTGCAGCTACTGCCGGCCATGGCTAAGCCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCATACTCCGGCTCTGGTTCCGGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTATCTCGAAGCGGTTCTTCTCGAAGCCGAAGCCCTGCTCCTCAAAGAAAGAGGTTTGTCTTTCTTTTGAGCTTGCATTTTTCGTTCTGAGGTCTTGCATTTGGTGCTTATTGGTTGTCAGTGTGTGAGGAAGTATCGGAATTAGGTATTCTATGCTTGGGAGGTTGGTCGATTATGCATTTTCTTTTTTGTCGCTGTTGATTGGTTTTTCTTATATTTATTCGAAGGCATGTTTTGGAATCATTACGTTATCGAGAAACAGACGCGCTCCGTATACCAAAATCCGTTTTTATGCGGTCATTGTATATCGCAATCACATCTTCATTTGTTTTTCAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGTAATAATACCTCCGTCTACAGTTAAATCCAACTTCTCATTTTTTATCATCTTATTGACATTTAGTCTCTTCATTATTTGTTCATGACATGCATTTTCCGATAAGTCTTAACATTTATACTTTGGCGCGGTTTTTTATCCCCGCCTTTTGTTAAAGACTGCTTCCGAGCCTCTTCAATGGTTGTTTTTCTGCTGTTTGTTTAGTAAGTTACAAATTATGGATGACAAGGGAACAATTTCGCTTTCAAAAGAAGGTCAAAGTCTAAACCAAAGGAGTTAAAAGAATCCAATTGGTCAAAAGTGTAGAGAGACCATAAGATTTATAAAGGAAGTGCATTTACCCAAAGACGTTGTTTGGAAGTAAATTTGCTTAAAATAATGATCAAAAGTGTTGTACTTATCTTGAAAGAGATTATGGTTACTTTCATTCCATGTTGTCCACAAAAAAATCCGAAATGCATCCAAAGAACTCCCCCCCTCCCAAAAGAAAAATGTAACCTTCTTTGGATGAACTGTCCATATCTCTCCTCAAAGAGGATGCAGATCTGTTTCGAACAAACTGAAAAACAAAGAAGATAAGATTTTGATGTATTTACCTCTGAAAAATCTGTCCATACTATTTTTTGAACTTAAATATGGTTTAATATATTATTTTTTATTTTATTCTAAGAAGCTCATTCTTCCTTATCATTTAGTCAGTTAAAACATGGTTTGATTTAAATTCCTTGACTATTTGTCGAAGCATTAAAAAAATCTTCGAATTCAATACTTTTTCAGAACTGTGGTGTTACTGGTTCATTATTTTCAACTTTTAATCATTTTTTGCCCTTGTTGAACTCAAATGTGATAAAGGATGCTCTATTAGCTTTAATTGTCTTGCAACTAAATTTTATCTTAGTAATCTATAATCACTTGCAAATGTATATGTAATTGACTATTTCAAAGCTGACATTTGCATTTTTTTAATACCAATATTTTCTTTATTCATGCATCTGTATTATCAGCGATTTACATATAATGCTTTCATTTTGTGATATGCCTGTCAGTTGTATTTATATAATTTGCTTATCACGCTGTCAATTGATTTCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAAAGAAATCTTCAGTATGGTTTTTCACTCGCTTTATTTAGCATTTAAACAATTATTCTGTTGGATAAGTGCACTTATTTCTTCAGATTGTTCTTTTTTTAAAAGTTACAAGTAAAATTCATCAATTAAAACCGAAGAGTAAGACAAAATAAAATCTTATTTCAACCTTCAATCACATTATGTGAAAGATACAACACTTTGACTTCATGAACCTAGTATTTTGTCTTACAAAAAAAGACTTTGTGTAAACGTATGTATTTATGTATTAGATTCAATTCAACCTAGCCTGTTTATTGGTAATGATCATTGACCGTGTTGTTTTGTCCTCAACAATTGAGTAATTTGTCTTATCAATTACTCTTCATCACTGCATGCTCATTCCTTCCTTTCCTCTCGACTGTTTTCAAATTATAGACAGTTTGTTTTCATGAAATTTTTTATCCTCATTCAATTGAAGTGATCCCCTTGATTTTTCCTCCAAAAGTCTCTATCTATTTAGTTAGGATTGACGATATTGGATTGAATAGGTAATTTGTTATTTTATAAAAAAATTGTAACTCTTATGAATTTCCTTTTTTTTTTTTTTTTTTTTTTGATACCCTTTAGGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTGAGTCCTTACCATGCATATTGTATTTGAAGAACTTTTTCTTGAATAATATATTGATGCATCTGTTTTAATATTTACAGGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGTATGTTTTTCTTAAATGTTCAAGTACTTGAAGTACATCTATTGATAATTTCTCATAACTGGGAAATGATTGTGATGGTTGGCTGAATGTAGGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGACGCTGAGAAGAATGACATGAAAAGACAGAGAGAACGTATAACTCTCAATTATTATATATTTTTCCATGTTCAACTGTTTTTGCCTATTATTCTATTCTATTTTTCATGAGGATATGTTATTTTAGTGATTTATGTCTGGTTTGTCACATCAGCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCGAGGCGACATAGATCTCCTCCAAGGTTGACCATCATCCCCCCACTCTTCAACCCCCCAGCCTCACACACACACACACACAATCTATCTCCTTTCCTGTAAATAGTGGGAGCATTAACATTCTTTAACTTCGGTTGAATAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGGTATTACACATTTGACTGTTATGAGATATCGTAGTATTTTTTCTTGCAGTTTATTTGAATGGTACACAGACATGTTTATTGTTTCTAACTTCACAAATCTTCATATAATGACAAGGTGAACTATTTATGACTTACTGCACGTGTTAAGTTTAATCTTATTGTTTCTGAGTTAAGAGTAAACGTCCGGAGAGTAGTGAATTATGCAGGAGCATATGTTAATATCAATTTTTATTTTGAGCCTTTGTTTTTAGAGTGTGTTTCTTTTATTTTTAGATTTCCAGCTACATCAGGTATTTTGTAGAATAAAAATTGCATCAGGTAACTGTGGTTTTTGGGTGATCCGAGCAAATTCAAAATAATGCTATTTCAGACTTAGAATGAAGTAGCAACCTGAGTTACTCTTGATGTAACTATTTAAGACTCTACTTGCTTCCATTATGGTACAAAGATGTTCCTGTAGTTTAATCTTAGGCATTAGAAGAATGGTGACTGGGGGCATGATTACTTTCTAATGTTTGAGAAATTTAAGCATTTAAGCATATGGCAGTGGGAGCTTTTAATTGCTTGTTCACTATGGTCGACCCATGGTTTTTACTTGAAAATGATGTAGTCTGACTCAGTGGTCTCACTTATGTTTTTGCTTAGGTATATGAGCGTTACTTAACTAAATTATGTTTCTTTCAGTACACCGCCTCGACGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGCAGAAGGAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCACGGAGGTAACTTGATGCCTAATGATTTTTTTTTTTTTTTTTTTTGGTCATGACCAACTGCCTTTAAAGAAAAAAATATTAGTATCTATGGATGCCTAATGAACTTTTTTTTCATGATCAACTCCCTTTTAAAGAAGAATTATTTCATATTGTTTGCTTGTCCACTCTGCTTGTGGTGCATAAATTAAATGACGAAGTAGACACAGAAGTCCCTACCATTGGCATCGATCAAGAAAGGATAATAGTCATAATAAACCCTTTCTGAACAGCCCCAAGTGAGGGCTATGAAACAAGTTCAAAGATTCTCATCTTCTTTTCAATTGCAGTTTATTTGAAGCAAACTTTGACAGATGTCTGGTGTTGTGGTCTTGGGATTTTATATTACAACAATCCTTAGAAACTAAGCTTAAACGATCTCAAGTTCCTATTTCTTACCTGAAACTTTGTATGTGCGTAATTGGCTATTAGTGGATAACATTTGTTTTGTATAGTTAGCTTTTAGAAAGGATGCGAATAATGTGCATCTGTAGTCATATTGCGTGTTCCATTTGTAGGGATTTTGGTGTGAGAAGTCTTCTTCAATGGCAGGAAAGATCTTATTTTAATGTTTGATCCGTTGTTAAATTCTATGTTTCTCTTTGAACTTTGGCTACTTTGTCAATCTGTAATTACTCGCTAGATCATATTTTATTGGAGTGAGACCCCTTTTTGTAGCTTGTTGCTTGCTTCATATTTCTTCTGGCCTTTTGTTTTGTATGTCCGTGTATTCTTATGGTTCTCTCTATACAGAGGTCGGCCTGCAGCCGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTTTGCTGTGATTGATCTTGCCATTTTTTTCACCGCTCTGGGTTTATTATTGTTCGTTCTTCCTTGCATCCCGAGTGCCTTCATTGTTCTCTATTTTATATTACAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGTAATAACTCTGTGCATTTGATATTCCAAAAATGTTAGGAATTTTCGATATTCTTGTAGGCCAGTTTGCTGCCCAGTTCAAATCACTTGACTTTTGCATGGACTTTTGCCGTTTCTTTTTAACTAAAGACGAGTGTGTTTCCAAACCCATAAACCACAGAGAGCCACTGCAATTGGATTATTCTATATATCGAGCTTACAGATATCGAGTACAACAAGTCTGGAATGACTTCTGAAAGAAAGTACTTCAATACTTTTGAAGTGTTTTTAAGTTATGTTATGAGATCCTATATCAGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGATATGGAAACCTCTCTCTAGTAGACTTGTGGAAACTTCTCTTAAAACCATGAGGGCTGATGACAATATGTAACGGGCCAAAGTAGACAATATCTACTAGCGGTAGGCTTAGGCTTAGGCTGTTACAAATAACATAAGAGCTAGACACCCGACGGTGTGCCGGCGAAGATGCGAAGATGCTGGGCCCCGAAGGGGAGTGGATTGTGAGATCCCACATTGGTTGGAGAGAAAAACGAAATATTCCTTATAAAAAGCATGGAAACCTCTTCTTAGTAGATGCTTTATAAAATCGTGAGGCTGATGGGTTGAAGCAGACAATATCAACTAACAATGGACTTAGGCCCGTTACATATGTGCTCTTGATCATCTAACCAAACATCGATTAATTCTCTCTGAATCTTATTATTACAACCATTATTATAATATACATACGTACATATTTAATTATGTTGTGTGATCGTTTGGTGTATAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAAGAACTCTACACATCTTGCGCCTTCTCACTCCCTAATTCTCTCTTGTTCTATCTGTGTATTCCAAAAGACGCGACAGTTTTTTCCCCACACCTGGTGAAGAGCCGAGCCTTCTTGTAGTGAAAATATTTGTGGATTAAATGCCATTTTGGGCTTGTCAGCAGTAGTTAGTTTCCTAAACATTTTTATATCTTTGCTTCTAACTGCACTCTGTAGTATTATTACATTTCTTCTACTATACAAAGGCCCAGACGTCGAGTTCTCCCTTTTCTTATTCGTTTTAGAGACATCCCCTCGTATTTTATGTCGGTCTAGTTTGTGTCTATTCGACTCTTGTGGGGTGGGGGCACGG

mRNA sequence

TTTCGGTCCATTCGGTTCCGTACGAATACGTTTCGACCATTTCTGTGTCGCTTTTCTCTTCATTATCTCTAAATCCCAAACGAGACGGGTTTAAGTTAGGGTTTCAAATTTCGCTCTGCAGCTACTGCCGGCCATGGCTAAGCCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCATACTCCGGCTCTGGTTCCGGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTATCTCGAAGCGGTTCTTCTCGAAGCCGAAGCCCTGCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGACGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCGAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGACGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGCAGAAGGAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCACGGAGAGGTCGGCCTGCAGCCGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAAGAACTCTACACATCTTGCGCCTTCTCACTCCCTAATTCTCTCTTGTTCTATCTGTGTATTCCAAAAGACGCGACAGTTTTTTCCCCACACCTGGTGAAGAGCCGAGCCTTCTTGTAGTGAAAATATTTGTGGATTAAATGCCATTTTGGGCTTGTCAGCAGTAGTTAGTTTCCTAAACATTTTTATATCTTTGCTTCTAACTGCACTCTGTAGTATTATTACATTTCTTCTACTATACAAAGGCCCAGACGTCGAGTTCTCCCTTTTCTTATTCGTTTTAGAGACATCCCCTCGTATTTTATGTCGGTCTAGTTTGTGTCTATTCGACTCTTGTGGGGTGGGGGCACGG

Coding sequence (CDS)

ATGGCTAAGCCAAGCAGAGGCCGTCGTTCGCCGCCGTCGGGTTCGGGATCCTCCTCACGTTCCCGCTCATACTCCGGCTCTGGTTCCGGCTCCAGTTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCCCGCTCTCGTTCCAGGTCCATTTCCTCGTCTTCGTCTCTATCTCGAAGCGGTTCTTCTCGAAGCCGAAGCCCTGCTCCTCAAAGAAAGAGTCCGAATGAAACAGCTCGGCGGACTCGCGCTTCACCTCCACCAGCTAAACGAATTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTAATTTTGGTGAAGTAGTCCATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACAAGACCTGATGCTGAAAAAGCCCAATTGCATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAACAAGATTTACATTGCCTCAAAGACAGAAGATCCCAACACCTCCAAGGACTGTAGCAACCGCTCCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGACGCTGAGAAGAATGACATGAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCTTCTCCTAGAAGACGCTCGCCTATTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCCGATTCTCCTCGCCGCCGTCCAGAGTCTCCTCCGCGTCGCCGCTTAGAATCTCCCCCTAGAAGGAGGCCTGCATCACCCATGAGAGGTGGCCGTTCTCCATCGCCTTTGGCGAGGCGACATAGATCTCCTCCAAGGCCCTCTCCAAGAAGAATTCGTGACAGTCCTGTTCGAAGACGTTCACCACCCCCTCCTAGGCGCCGTACACCGCCTCGACGTGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGCAGAAGGAGCCGTTCACCTATTAGAAGACCAGCTCGATCACGTTCCCGATCATCTTCACCACGGAGAGGTCGGCCTGCAGCCGCTGGTAGACGTGGGAGATCATCGTCCTACTCTGCATCACCTAGTCCACGCAAGGTGCCCAGGAGAGTATCTCGCAGTCCAAGAAGGCCTTTAAGAGGGAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCCCGCAAGCCATAA

Protein sequence

MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHEGNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP

Homology

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BLAST of Carg20052 vs. NCBI nr
Match: KAG7024701.1 (RNA-binding protein with serine-rich domain 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 688.3 bits (1775), Expect = 3.9e-194
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQR 180
           GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQR
Sbjct: 121 GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFTLPQR 180

Query: 181 QKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGS 240
           QKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGS
Sbjct: 181 QKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIARRGGS 240

Query: 241 PRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSP 300
           PRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSP
Sbjct: 241 PRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRDSP 300

Query: 301 VRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRR 360
           VRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRR
Sbjct: 301 VRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGRPAAAGRR 360

Query: 361 GRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           GRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 GRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 405

[Close]

BLAST of Carg20052 vs. NCBI nr
Match: KAG6591837.1 (Serine/arginine-rich splicing factor SR45, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 679.5 bits (1752), Expect = 1.8e-191
Identity = 404/412 (98.06%), Postives = 405/412 (98.30%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQP+SPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPNSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Carg20052 vs. NCBI nr
Match: XP_023536426.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 674.1 bits (1738), Expect = 7.6e-190
Identity = 401/412 (97.33%), Postives = 403/412 (97.82%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGS SSSRSRSRSASVSRSRSRS+SISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSKSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSP PQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGTSRSRSPPPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Carg20052 vs. NCBI nr
Match: XP_022936958.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita moschata])

HSP 1 Score: 667.5 bits (1721), Expect = 7.1e-188
Identity = 401/412 (97.33%), Postives = 401/412 (97.33%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSG SSRSRSYSGSGS SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSG-SSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRG RSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGCRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRS SYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSPSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg20052 vs. NCBI nr
Match: XP_022976788.1 (serine/arginine-rich splicing factor SR45-like [Cucurbita maxima])

HSP 1 Score: 660.2 bits (1702), Expect = 1.1e-185
Identity = 396/412 (96.12%), Postives = 399/412 (96.84%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGS SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSPAPQRKSPNETARRTRAS P AKRISPPPRKPSPVRESLVLHID LSRNVHE
Sbjct: 61  SGTSRSRSPAPQRKSPNETARRTRASSPLAKRISPPPRKPSPVRESLVLHIDPLSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATA KRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATASKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRR+SRSPIRRPARSRSRSSSPRRG+
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRKSRSPIRRPARSRSRSSSPRRGQ 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRSSSYSASPSPRKVPRRV RSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVYRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Carg20052 vs. ExPASy Swiss-Prot
Match: Q9SEE9 (Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 3.0e-104
Identity = 285/420 (67.86%), Postives = 325/420 (77.38%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRSRS+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S SS SRSP  + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 -------GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
                  GNFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRRGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 406
           PR+GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 PRKGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Carg20052 vs. ExPASy Swiss-Prot
Match: Q28E41 (RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=rnps1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-15
Identity = 107/261 (41.00%), Postives = 136/261 (52.11%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSS 64
           +R RRS  SGS SSSRSRS S S S S S S S S S S S S SRS SSSSS S S SS
Sbjct: 64  ARKRRSASSGSSSSSRSRSSSSSSSSSGSSSGSSSGSSSSSAS-SRSGSSSSSRSSSSSS 123

Query: 65  RSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE---- 124
            S SP+P R+  ++  RR+R+     KR     ++ SP      +HI  L+RNV +    
Sbjct: 124 SSGSPSPSRRR-HDNRRRSRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHIL 183

Query: 125 ---GNFGEVVHVELAMDR-TVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
                +G++  +++ +DR   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 184 EIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITASAV 243

Query: 185 LPQRQKIPTPPRTVA---TAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 244
           L      P P R +    + P+R  P P           M R+  P  RR+  SPRRRSP
Sbjct: 244 L-----TPWPMRAMPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSP 303

Query: 245 IARRGGSPRRQPDSPRRRPES 255
           + RR  SP R+    R    S
Sbjct: 304 VRRRSRSPARRRHRSRSSSNS 307

[Close]

BLAST of Carg20052 vs. ExPASy Swiss-Prot
Match: Q15287 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-15
Identity = 105/258 (40.70%), Postives = 139/258 (53.88%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSS 64
           +R RRS  SGS SS+RSRS S S SGSS+ + S S S S S S SRS SSS+S S S SS
Sbjct: 62  TRKRRSASSGS-SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSS 121

Query: 65  RSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE---- 124
            S SP+P R+  ++  RR+R+   P KR     ++ SP  +   +HI  L+RNV +    
Sbjct: 122 SSGSPSPSRRR-HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 181

Query: 125 ---GNFGEVVHVELAMDRT-VNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
                +G++  +++ ++R   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 182 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 241

Query: 185 LPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIAR 244
           L      P PP    + P+R  P P           M R+  P  RR+  SPRRRSP+ R
Sbjct: 242 L---APWPRPPPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRR 301

Query: 245 RGGSPRRQPDSPRRRPES 255
           R  SP R+    R    S
Sbjct: 302 RSRSPGRRRHRSRSSSNS 303

[Close]

BLAST of Carg20052 vs. ExPASy Swiss-Prot
Match: Q4R5N1 (RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis OX=9541 GN=RNPS1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-15
Identity = 105/258 (40.70%), Postives = 139/258 (53.88%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSS 64
           +R RRS  SGS SS+RSRS S S SGSS+ + S S S S S S SRS SSS+S S S SS
Sbjct: 62  TRKRRSASSGS-SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSS 121

Query: 65  RSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE---- 124
            S SP+P R+  ++  RR+R+   P KR     ++ SP  +   +HI  L+RNV +    
Sbjct: 122 SSGSPSPSRRR-HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 181

Query: 125 ---GNFGEVVHVELAMDRT-VNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
                +G++  +++ ++R   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 182 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 241

Query: 185 LPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIAR 244
           L      P PP    + P+R  P P           M R+  P  RR+  SPRRRSP+ R
Sbjct: 242 L---APWPRPPPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRR 301

Query: 245 RGGSPRRQPDSPRRRPES 255
           R  SP R+    R    S
Sbjct: 302 RSRSPGRRRHRSRSSSNS 303

[Close]

BLAST of Carg20052 vs. ExPASy Swiss-Prot
Match: Q99M28 (RNA-binding protein with serine-rich domain 1 OS=Mus musculus OX=10090 GN=Rnps1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-15
Identity = 105/258 (40.70%), Postives = 139/258 (53.88%), Query Frame = 0


Query: 5   SRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSS 64
           +R RRS  SGS SS+RSRS S S SGSS+ + S S S S S S SRS SSS+S S S SS
Sbjct: 62  TRKRRSASSGS-SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSS 121

Query: 65  RSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE---- 124
            S SP+P R+  ++  RR+R+   P KR     ++ SP  +   +HI  L+RNV +    
Sbjct: 122 SSGSPSPSRRR-HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 181

Query: 125 ---GNFGEVVHVELAMDRT-VNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRTRFT 184
                +G++  +++ ++R   +L KGY YVEF+   +AEKA  HMDG QIDG  I     
Sbjct: 182 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 241

Query: 185 LPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSPIAR 244
           L      P PP    + P+R  P P           M R+  P  RR+  SPRRRSP+ R
Sbjct: 242 L---APWPRPPPRRFSPPRRMLPPP----------PMWRRSPPRMRRRSRSPRRRSPVRR 301

Query: 245 RGGSPRRQPDSPRRRPES 255
           R  SP R+    R    S
Sbjct: 302 RSRSPGRRRHRSRSSSNS 303

[Close]

BLAST of Carg20052 vs. ExPASy TrEMBL
Match: A0A6J1FEP9 (serine/arginine-rich splicing factor SR45-like OS=Cucurbita moschata OX=3662 GN=LOC111443390 PE=4 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 3.4e-188
Identity = 401/412 (97.33%), Postives = 401/412 (97.33%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSG SSRSRSYSGSGS SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSG-SSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRG RSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGCRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRS SYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSPSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 411

[Close]

BLAST of Carg20052 vs. ExPASy TrEMBL
Match: A0A6J1IN70 (serine/arginine-rich splicing factor SR45-like OS=Cucurbita maxima OX=3661 GN=LOC111477064 PE=4 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 5.5e-186
Identity = 396/412 (96.12%), Postives = 399/412 (96.84%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRSYSGSGS SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SG+SRSRSPAPQRKSPNETARRTRAS P AKRISPPPRKPSPVRESLVLHID LSRNVHE
Sbjct: 61  SGTSRSRSPAPQRKSPNETARRTRASSPLAKRISPPPRKPSPVRESLVLHIDPLSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT
Sbjct: 121 GHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQKIPTPPRTVATA KRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKIPTPPRTVATASKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300
           IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP
Sbjct: 241 IARRGGSPRRQPDSPRRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRPSP 300

Query: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPRRGR 360
           RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRR+SRSPIRRPARSRSRSSSPRRG+
Sbjct: 301 RRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRKSRSPIRRPARSRSRSSSPRRGQ 360

Query: 361 PAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
           PAAAGRRGRSSSYSASPSPRKVPRRV RSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 PAAAGRRGRSSSYSASPSPRKVPRRVYRSPRRPLRGRSSSRSSSSSSPPRKP 412

[Close]

BLAST of Carg20052 vs. ExPASy TrEMBL
Match: A0A0A0KZM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 6.1e-177
Identity = 382/419 (91.17%), Postives = 392/419 (93.56%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGS SSSRSRS+SGS S SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSASSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSRSP PQRKSP ETARR+RASPPPAKR SPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRSPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVV+VELAMDRTVNLPKGYGYVEFKTR DAEKAQ++MDGAQIDGNVIR 
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQK+PTPPRTVAT PKRDGPKPENVG DAEK+DMKRQREPSPRRKPPSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEKDDMKRQREPSPRRKPPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLES-------PPRRRPASPMRGGRSPSPLARRHR 300
           +ARRGGSPRRQPDSPRRRP+SPPRRR+ES       PPRRRPASPMRGGRSPSPLARRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPDSPPRRRIESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360
           SPPRPSPRRIR SPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 SSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
            SPRRGRP AAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Carg20052 vs. ExPASy TrEMBL
Match: A0A1S3CPA3 (serine/arginine-rich splicing factor SR45 OS=Cucumis melo OX=3656 GN=LOC103503047 PE=4 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.7e-174
Identity = 380/419 (90.69%), Postives = 390/419 (93.08%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRSPPSGSGSSSRSRS+SGS S SSSRSRSRSASVSRSRSRSRSISSSSSLSR
Sbjct: 1   MAKPSRGRRSPPSGSGSSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           SGSSRSR+P PQRKSP ETARR+RASPPPAKR SPPPRKPSPVRESLVLHIDALSRNVHE
Sbjct: 61  SGSSRSRTPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE 120

Query: 121 G-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
           G       NFGEVV+VELAMDRTVNLPKGYGYVEFKTR DAEKAQ++MDGAQIDGNVIR 
Sbjct: 121 GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
           RFTLPQRQK+PTPPRTVAT  KRDGPKPENVG DAEK+DMKRQRE SPRRK PSPRRRSP
Sbjct: 181 RFTLPQRQKMPTPPRTVATVSKRDGPKPENVGPDAEKDDMKRQRESSPRRKLPSPRRRSP 240

Query: 241 IARRGGSPRRQPDSPRRRPESPPRRRLES-------PPRRRPASPMRGGRSPSPLARRHR 300
           +ARRGGSPRRQPDSPRRRPESPPRRR+ES       PPRRRPASPMRGGRSPSPLARRHR
Sbjct: 241 VARRGGSPRRQPDSPRRRPESPPRRRVESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR 300

Query: 301 SPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360
           SPPRPSPRRIR SPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS
Sbjct: 301 SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS 360

Query: 361 SSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 406
            SPRRGRP AAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
Sbjct: 361 FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 419

[Close]

BLAST of Carg20052 vs. ExPASy TrEMBL
Match: A0A6J1C2D4 (serine/arginine-rich splicing factor SR45 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007818 PE=4 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 1.0e-168
Identity = 379/423 (89.60%), Postives = 389/423 (91.96%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSG--SGSSSRSRSYSGSGSGSS--SRSRSRSASVSRSRSRSRSISSSS 60
           MAKPSRGRRSPPSG  SGSSSRSRS+SGS S SS  SRSRSRS SVSRSRSRSRS SSSS
Sbjct: 1   MAKPSRGRRSPPSGSASGSSSRSRSFSGSDSRSSSRSRSRSRSVSVSRSRSRSRSNSSSS 60

Query: 61  SLSRSGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSR 120
           SLSRSGSSRSRSP PQRKSP ETARRTRASPPPAKR SPPPRKPSPVRESLVLHIDALSR
Sbjct: 61  SLSRSGSSRSRSPPPQRKSPTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSR 120

Query: 121 NVHEG-------NFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGN 180
           NVHEG       NFGEVV+VELAMDRTVNLPKGYGYVEFKTRPDAEKAQ++MDGAQIDGN
Sbjct: 121 NVHEGHLREIFCNFGEVVNVELAMDRTVNLPKGYGYVEFKTRPDAEKAQVYMDGAQIDGN 180

Query: 181 VIRTRFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPR 240
           VIR RFTLPQRQK+PTPPRTVA APKRDGPKPENVGA+AEK+DMKRQREPSPRRKPPSPR
Sbjct: 181 VIRVRFTLPQRQKMPTPPRTVAIAPKRDGPKPENVGANAEKDDMKRQREPSPRRKPPSPR 240

Query: 241 RRSPIARRGGS-PRRQPDSPRRRPESPPRRRLE------SPPRRRPASPMRGGRSPSPLA 300
           RRSP+ARRGGS PRRQPDSPRRRPESPPRRR+E      SPPRRRPASP+R GRSPSPL 
Sbjct: 241 RRSPVARRGGSPPRRQPDSPRRRPESPPRRRVESPFRRDSPPRRRPASPIR-GRSPSPLP 300

Query: 301 RRHRSPPRPSPRRIRDSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARS 360
           RRHRSPPRPSPRRIR SPVRRRSPPPPRRRTPPRR RSPPRRSPVVRRRSRSPIRRPARS
Sbjct: 301 RRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRVRSPPRRSPVVRRRSRSPIRRPARS 360

Query: 361 RSRSSSPRRGRPAAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPP 406
           RSRS SPRRGRPAAA RRGRSSSYSASPSPRKV RRVSRSPRRPLRGRSSSRSSSSSSPP
Sbjct: 361 RSRSFSPRRGRPAAAARRGRSSSYSASPSPRKVARRVSRSPRRPLRGRSSSRSSSSSSPP 420

[Close]

BLAST of Carg20052 vs. TAIR 10
Match: AT1G16610.1 (arginine/serine-rich 45 )

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-105
Identity = 285/420 (67.86%), Postives = 325/420 (77.38%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRSRS+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S SS SRSP  + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 -------GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
                  GNFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRRGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 406
           PR+GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 PRKGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 409

[Close]

BLAST of Carg20052 vs. TAIR 10
Match: AT1G16610.2 (arginine/serine-rich 45 )

HSP 1 Score: 373.2 bits (957), Expect = 2.6e-103
Identity = 281/418 (67.22%), Postives = 321/418 (76.79%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRSRS+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S SS SRSP  + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 -------GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
                  GNFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKNDMKRQREPSPRRKPPSPRRRSP 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   R+    PR +  SPRRRSP
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRR----PRER-LSPRRRSP 240

Query: 241 IARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPPRP 300
           + RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPPR 
Sbjct: 241 LPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRG 300

Query: 301 SPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSSPR 360
           SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S SPR
Sbjct: 301 SPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSISPR 360

Query: 361 RGRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRSSSSSSPPRKP 406
           +GR   AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS SSSSSSPP  P
Sbjct: 361 KGR-GPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPP 402

[Close]

BLAST of Carg20052 vs. TAIR 10
Match: AT1G16610.3 (arginine/serine-rich 45 )

HSP 1 Score: 372.9 bits (956), Expect = 3.4e-103
Identity = 284/430 (66.05%), Postives = 324/430 (75.35%), Query Frame = 0


Query: 1   MAKPSRGRRSPPSGSGSSSRSRSYSGSGSGSSSRSRSRSASVSRSRSRSRSISSSSSLSR 60
           MAKPSRGRRS PS SGSSSRS S S SGS       S S S+SRSRSRSRS+SSSSS SR
Sbjct: 1   MAKPSRGRRS-PSVSGSSSRSSSRSRSGS-------SPSRSISRSRSRSRSLSSSSSPSR 60

Query: 61  SGSSRSRSPAPQRKSPNETARRTRASPPPAKRISPPPRKPSPVRESLVLHIDALSRNVHE 120
           S SS SRSP  + KSP   ARR R+ PPP  + +  P K + V+ESLVLH+D+LSRNV+E
Sbjct: 61  SVSSGSRSPPRRGKSPAGPARRGRSPPPPPSKGASSPSKKA-VQESLVLHVDSLSRNVNE 120

Query: 121 -------GNFGEVVHVELAMDRTVNLPKGYGYVEFKTRPDAEKAQLHMDGAQIDGNVIRT 180
                  GNFGEV+HVE+AMDR VNLP+G+GYVEFK R DAEKAQL+MDGAQIDG V++ 
Sbjct: 121 AHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKA 180

Query: 181 RFTLPQRQKIPTPPRTVATAPKRDGPKPENVGADAEKN-DMKRQREPSPRRKPP-SPRRR 240
            FTLP RQK+ +PP+ V+ APKRD PK +N  ADAEK+   +R RE SP+RK   SPRRR
Sbjct: 181 TFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRETSPQRKTGLSPRRR 240

Query: 241 SPIARRGGSPRRQ-PDSP-RRRPESPPRRRLESPPRRRPASPMRGGRSPSPLARRHRSPP 300
           SP+ RRG SPRR+ PDSP RRRP SP RRR ++PPRRRPASP RG    SP  RR+RSPP
Sbjct: 241 SPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPP 300

Query: 301 RPSPRRIRDSPVRRRSPPPPRRRT-PPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSSS 360
           R SPRRIR SPVRRRSP P RRR+ PPRR RSPPRRSP +RRRSRSPIRRP RSRS S S
Sbjct: 301 RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP-IRRRSRSPIRRPGRSRSSSIS 360

Query: 361 PRR----------GRPAAAGRRGRSSSYSASPSPRKVPRRV--SRSPRRPLRG-RSSSRS 406
           PR+          G    AGRRGRSSSYS+SPSPR++PR++  SRSP+RPLRG RSSS S
Sbjct: 361 PRKYVGTHLNFFLGGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNS 420

The following BLAST results are available for this feature:

BLAST of Carg20052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024701.1	3.9e-194	100.00	RNA-binding protein with serine-rich domain 1 [Cucurbita argyrosperma subsp. arg...	[more]
KAG6591837.1	1.8e-191	98.06	Serine/arginine-rich splicing factor SR45, partial [Cucurbita argyrosperma subsp...	[more]
XP_023536426.1	7.6e-190	97.33	serine/arginine-rich splicing factor SR45-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936958.1	7.1e-188	97.33	serine/arginine-rich splicing factor SR45-like [Cucurbita moschata]	[more]
XP_022976788.1	1.1e-185	96.12	serine/arginine-rich splicing factor SR45-like [Cucurbita maxima]	[more]

BLAST of Carg20052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEE9	3.0e-104	67.86	Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR4...	[more]
Q28E41	2.6e-15	41.00	RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis OX=8364 GN=r...	[more]
Q15287	3.4e-15	40.70	RNA-binding protein with serine-rich domain 1 OS=Homo sapiens OX=9606 GN=RNPS1 P...	[more]
Q4R5N1	3.4e-15	40.70	RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis OX=9541 GN=...	[more]
Q99M28	3.4e-15	40.70	RNA-binding protein with serine-rich domain 1 OS=Mus musculus OX=10090 GN=Rnps1 ...	[more]

BLAST of Carg20052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEP9	3.4e-188	97.33	serine/arginine-rich splicing factor SR45-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IN70	5.5e-186	96.12	serine/arginine-rich splicing factor SR45-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KZM9	6.1e-177	91.17	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G607050 PE=4 SV...	[more]
A0A1S3CPA3	1.7e-174	90.69	serine/arginine-rich splicing factor SR45 OS=Cucumis melo OX=3656 GN=LOC10350304...	[more]
A0A6J1C2D4	1.0e-168	89.60	serine/arginine-rich splicing factor SR45 isoform X2 OS=Momordica charantia OX=3...	[more]

BLAST of Carg20052 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16610.1	2.1e-105	67.86	arginine/serine-rich 45	[more]
AT1G16610.2	2.6e-103	67.22	arginine/serine-rich 45	[more]
AT1G16610.3	3.4e-103	66.05	arginine/serine-rich 45	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..174 e-value: 2.1E-7 score: 40.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..172 e-value: 3.0E-9 score: 36.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 112..178 score: 11.247069
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 112..279 e-value: 1.6E-12 score: 49.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..76
None	No IPR available	PANTHER	PTHR15481:SF9	BNAA09G56240D PROTEIN	coord: 25..397
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 25..397
IPR034201	RNPS1, RNA recognition motif	CDD	cd12365	RRM_RNPS1	coord: 109..174 e-value: 3.84653E-29 score: 106.486
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 93..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20052-RA	Carg20052-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding