Carg19971 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19971
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Location	Carg_Chr03: 4323552 .. 4323974 (+)
RNA-Seq Expression	Carg19971
Synteny	Carg19971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGATCCTTCACGTTCAGGGTGGGCAATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTTTGCGCCGAGCACGGCATCGATACCACCGGGAAGTATCAGGGAGATTCCGATCTTCAGCTTGAGAGGATTAATGTCTACTACAATGAAGCTAGTTGCGGGAGGTATGTACCTCGCGCTGTTCTCATGGATCTTGAACCTGGTACTATGGACAGTATCAGATCTGGGCTTTATGGTCAGATCTTCCGACCGGATAATTTTGTTTTTGGTCAATCTGGTGCTGGAAACAACTGGGCTAAAGGTCACTACACTGAGGGTGCTGAGCTTATTGATTCCGTGCTCGATGTCGTCCGGAAGGAGGCGGAGAACTGTGATTGTTTGCAAGGTTTGCTATTGATCTGCCTCTGTTTCTGA

mRNA sequence

ATGAGAGAGATCCTTCACGTTCAGGGTGGGCAATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTTTGCGCCGAGCACGGCATCGATACCACCGGGAAGTATCAGGGAGATTCCGATCTTCAGCTTGAGAGGATTAATGTCTACTACAATGAAGCTAGTTGCGGGAGGTATGTACCTCGCGCTGTTCTCATGGATCTTGAACCTGGTACTATGGACAGTATCAGATCTGGGCTTTATGGTCAGATCTTCCGACCGGATAATTTTGTTTTTGGTCAATCTGGTGCTGGAAACAACTGGGCTAAAGGTCACTACACTGAGGGTGCTGAGCTTATTGATTCCGTGCTCGATGTCGTCCGGAAGGAGGCGGAGAACTGTGATTGTTTGCAAGGTTTGCTATTGATCTGCCTCTGTTTCTGA

Coding sequence (CDS)

ATGAGAGAGATCCTTCACGTTCAGGGTGGGCAATGTGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTTTGCGCCGAGCACGGCATCGATACCACCGGGAAGTATCAGGGAGATTCCGATCTTCAGCTTGAGAGGATTAATGTCTACTACAATGAAGCTAGTTGCGGGAGGTATGTACCTCGCGCTGTTCTCATGGATCTTGAACCTGGTACTATGGACAGTATCAGATCTGGGCTTTATGGTCAGATCTTCCGACCGGATAATTTTGTTTTTGGTCAATCTGGTGCTGGAAACAACTGGGCTAAAGGTCACTACACTGAGGGTGCTGAGCTTATTGATTCCGTGCTCGATGTCGTCCGGAAGGAGGCGGAGAACTGTGATTGTTTGCAAGGTTTGCTATTGATCTGCCTCTGTTTCTGA

Protein sequence

MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGLLLICLCF

Homology

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BLAST of Carg19971 vs. NCBI nr
Match: KAG7033797.1 (Tubulin beta-8 chain, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 4.6e-78
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGLLLICLCF 141
           RKEAENCDCLQGLLLICLCF
Sbjct: 121 RKEAENCDCLQGLLLICLCF 140

[Close]

BLAST of Carg19971 vs. NCBI nr
Match: XP_022950702.1 (tubulin beta chain-like [Cucurbita moschata] >XP_022978170.1 tubulin beta chain-like [Cucurbita maxima] >XP_023543287.1 tubulin beta chain-like [Cucurbita pepo subsp. pepo] >KAG6603607.1 Tubulin beta-8 chain, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. NCBI nr
Match: XP_038880892.1 (tubulin beta chain-like [Benincasa hispida])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. NCBI nr
Match: XP_004147894.1 (tubulin beta chain [Cucumis sativus] >KGN54346.1 hypothetical protein Csa_018155 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. NCBI nr
Match: XP_022151524.1 (tubulin beta chain-like [Momordica charantia])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy Swiss-Prot
Match: P29516 (Tubulin beta-8 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-73
Identity = 123/132 (93.18%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy Swiss-Prot
Match: Q6VAF4 (Tubulin beta-9 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 6.1e-73
Identity = 124/132 (93.94%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+Y GDS+LQLERINVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy Swiss-Prot
Match: Q56YW9 (Tubulin beta-2 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB2 PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy Swiss-Prot
Match: Q9ASR0 (Tubulin beta-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy Swiss-Prot
Match: P37392 (Tubulin beta-1 chain OS=Lupinus albus OX=3870 GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-72
Identity = 122/132 (92.42%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+Y GD++LQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDNELQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy TrEMBL
Match: A0A6J1IPB5 (Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111478235 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy TrEMBL
Match: A0A0A0L2I9 (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_4G307390 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy TrEMBL
Match: A0A6J1DDB9 (Tubulin beta chain OS=Momordica charantia OX=3673 GN=LOC111019446 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy TrEMBL
Match: A0A6J1GFK1 (Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111453718 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. ExPASy TrEMBL
Match: A0A1S3BLJ2 (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103490956 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. TAIR 10
Match: AT5G23860.1 (tubulin beta 8 )

HSP 1 Score: 275.8 bits (704), Expect = 1.9e-74
Identity = 123/132 (93.18%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. TAIR 10
Match: AT5G23860.2 (tubulin beta 8 )

HSP 1 Score: 275.8 bits (704), Expect = 1.9e-74
Identity = 123/132 (93.18%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID+TG+YQG++DLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. TAIR 10
Match: AT5G62690.1 (tubulin beta chain 2 )

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-74
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. TAIR 10
Match: AT5G62700.1 (tubulin beta chain 3 )

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-74
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGAKFWEVVCAEHGID TG+Y GDSDLQLERINVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg19971 vs. TAIR 10
Match: AT5G12250.1 (beta-6 tubulin )

HSP 1 Score: 268.5 bits (685), Expect = 3.1e-72
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGAKFWEVVCAEHGIDTTGKYQGDSDLQLERINVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEVVC EHGID TG+Y G+SDLQLER+NVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSIRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRA+LMDLEPGTMDS+R+G YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

The following BLAST results are available for this feature:

BLAST of Carg19971 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033797.1	4.6e-78	100.00	Tubulin beta-8 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022950702.1	1.2e-73	100.00	tubulin beta chain-like [Cucurbita moschata] >XP_022978170.1 tubulin beta chain-...	[more]
XP_038880892.1	1.2e-73	100.00	tubulin beta chain-like [Benincasa hispida]	[more]
XP_004147894.1	1.2e-73	100.00	tubulin beta chain [Cucumis sativus] >KGN54346.1 hypothetical protein Csa_018155...	[more]
XP_022151524.1	1.2e-73	100.00	tubulin beta chain-like [Momordica charantia]	[more]

BLAST of Carg19971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29516	2.7e-73	93.18	Tubulin beta-8 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB8 PE=2 SV=2	[more]
Q6VAF4	6.1e-73	93.94	Tubulin beta-9 chain OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]
Q56YW9	1.4e-72	93.94	Tubulin beta-2 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB2 PE=2 SV=2	[more]
Q9ASR0	1.4e-72	93.94	Tubulin beta-3 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB3 PE=2 SV=2	[more]
P37392	1.8e-72	92.42	Tubulin beta-1 chain OS=Lupinus albus OX=3870 GN=TUBB1 PE=3 SV=1	[more]

BLAST of Carg19971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPB5	5.7e-74	100.00	Tubulin beta chain OS=Cucurbita maxima OX=3661 GN=LOC111478235 PE=3 SV=1	[more]
A0A0A0L2I9	5.7e-74	100.00	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_4G307390 PE=3 SV=1	[more]
A0A6J1DDB9	5.7e-74	100.00	Tubulin beta chain OS=Momordica charantia OX=3673 GN=LOC111019446 PE=3 SV=1	[more]
A0A6J1GFK1	5.7e-74	100.00	Tubulin beta chain OS=Cucurbita moschata OX=3662 GN=LOC111453718 PE=3 SV=1	[more]
A0A1S3BLJ2	5.7e-74	100.00	Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103490956 PE=3 SV=1	[more]

BLAST of Carg19971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23860.1	1.9e-74	93.18	tubulin beta 8	[more]
AT5G23860.2	1.9e-74	93.18	tubulin beta 8	[more]
AT5G62690.1	9.6e-74	93.94	tubulin beta chain 2	[more]
AT5G62700.1	9.6e-74	93.94	tubulin beta chain 3	[more]
AT5G12250.1	3.1e-72	90.15	beta-6 tubulin	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 76.26 coord: 10..30 score: 71.41 coord: 106..130 score: 70.19 coord: 51..70 score: 66.6
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..134
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 41..58 score: 78.7 coord: 88..99 score: 94.76 coord: 108..126 score: 87.58
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 1..139 e-value: 4.5E-63 score: 215.0
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..137
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..136 e-value: 2.1E-37 score: 129.2
None	No IPR available	PANTHER	PTHR11588:SF369	TUBULIN BETA CHAIN	coord: 1..134
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19971-RA	Carg19971-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton