Carg19929 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19929
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 6793338 .. 6794113 (+)
RNA-Seq ExpressionCarg19929
SyntenyCarg19929
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTGTCGCTACACTCTGTTTCTTCTTTCTCTGTTTTGGATGTCACTTTTGAACTTAGATTCCGCTTGTTTCTCTCTTTTTCCCCTGTTTTCTGTAATTATTTGTGGATATTTCTGTTTGTTTCTTATTTCTTCAATGATCTGTAAGAATTTGGGTTATGAGGGTTAGTTCGGGTTTGGATTGTGATATCTGGAGGGGAAGAGCTTGGGTTTGTGTAGCTCTGTAAAACTCTAGATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

mRNA sequence

ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

Coding sequence (CDS)

ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

Protein sequence

MTNYGKALRRTPNLRCHRSCHETVIVYTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHLCWPWSWFLAVDGGRRNGRQYTRLPHFDRKTPWLYGLCGGWLGVLDDESPRSTQFRK
Homology
BLAST of Carg19929 vs. NCBI nr
Match: KAG7019527.1 (hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.4 bits (986), Expect = 5.4e-103
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MTNYGKALRRTPNLRCHRSCHETVIVYTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHG 60
           MTNYGKALRRTPNLRCHRSCHETVIVYTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHG
Sbjct: 1   MTNYGKALRRTPNLRCHRSCHETVIVYTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHG 60

Query: 61  SSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEH 120
           SSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEH
Sbjct: 61  SSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEH 120

Query: 121 FELHLCWPWSWFLAVDGGRRNGRQYTRLPHFDRKTPWLYGLCGGWLGVLDDESPRSTQFR 180
           FELHLCWPWSWFLAVDGGRRNGRQYTRLPHFDRKTPWLYGLCGGWLGVLDDESPRSTQFR
Sbjct: 121 FELHLCWPWSWFLAVDGGRRNGRQYTRLPHFDRKTPWLYGLCGGWLGVLDDESPRSTQFR 180

Query: 181 K 182
           K
Sbjct: 181 K 181

BLAST of Carg19929 vs. NCBI nr
Match: KAG6583910.1 (hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-37
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0

Query: 27  YTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHGSSATMWAIFKRSLRRESRKMKLLGSA 86
           +TR+RYR LSP+F+LVKSISMDEEVGAKRSKGHGSSATMWAIFKRSLRRES KMKLLGSA
Sbjct: 16  HTRDRYRDLSPKFVLVKSISMDEEVGAKRSKGHGSSATMWAIFKRSLRRESSKMKLLGSA 75

Query: 87  FKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHLCW 128
           FKWKRLTNLQISFMDNLLFKIVSMLEGVVL+       LC+
Sbjct: 76  FKWKRLTNLQISFMDNLLFKIVSMLEGVVLVATLCFFFLCF 116

BLAST of Carg19929 vs. NCBI nr
Match: KAG7012520.1 (hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-24
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0

Query: 47  MDEEVGAKRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFK 106
           MDE+VGAK SK HG+ AT WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDN+LFK
Sbjct: 1   MDEKVGAKNSKSHGNQATRWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNILFK 60

Query: 107 IVSMLEGVVLMN 119
            VS+LEGVVL N
Sbjct: 61  FVSVLEGVVLEN 72

BLAST of Carg19929 vs. NCBI nr
Match: KJB57280.1 (hypothetical protein B456_009G156500 [Gossypium raimondii])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-07
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR + +E+ + K  GSAFKWKRL N++ SF+DN++FK+VS+LE + L+      +L
Sbjct: 7   WVLFKRFMTKEAWRWKCFGSAFKWKRL-NIKRSFVDNVVFKLVSVLEAIYLVATLCFFYL 66

Query: 126 CWPWSWFLAVDGGRRNG 143
           C  W      DG R NG
Sbjct: 67  CCGWK----CDGLRFNG 78

BLAST of Carg19929 vs. NCBI nr
Match: EOY27743.1 (Uncharacterized protein TCM_029517 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-07
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 54  KRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEG 113
           K+ K        W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE 
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEA 172

Query: 114 VVLMNEHFELHLC 127
           + L+      +LC
Sbjct: 173 IFLVATLCFFYLC 184

BLAST of Carg19929 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.5e-07
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 54  KRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEG 113
           K+ K        W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE 
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEA 172

Query: 114 VVLMNEHFELHLC 127
           + L+      +LC
Sbjct: 173 IFLVATLCFFYLC 184

BLAST of Carg19929 vs. ExPASy TrEMBL
Match: A0A6J1B6L1 (uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC110424571 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE + L+      +L
Sbjct: 7   WVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFYL 66

Query: 126 C 127
           C
Sbjct: 67  C 66

BLAST of Carg19929 vs. ExPASy TrEMBL
Match: A0A5D2UMB9 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G243400v1 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 65  MWAIFKRSLRRESRKMK-LLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFEL 124
           +WAIFKR L++ES + K +LGSAFKWKRL   Q SF+D+LLFKI S+ E + L++     
Sbjct: 6   IWAIFKRLLKKESWRWKYVLGSAFKWKRLHVHQFSFIDDLLFKIASIFEAIFLVSTLCFF 65

Query: 125 HLC 127
           +LC
Sbjct: 66  YLC 68

BLAST of Carg19929 vs. ExPASy TrEMBL
Match: A0A5D2QA32 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G234200v1 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 65  MWAIFKRSLRRESRKMK-LLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFEL 124
           +WAIFKR L++ES + K +LGSAFKWKRL     SF+D+LLFKI S+ E + L++     
Sbjct: 6   IWAIFKRLLKKESWRWKYVLGSAFKWKRLNIHHFSFLDDLLFKIASIFEAIFLVSTLCFF 65

Query: 125 HLC 127
           +LC
Sbjct: 66  YLC 68

BLAST of Carg19929 vs. ExPASy TrEMBL
Match: A0A6P4MIU0 (uncharacterized protein LOC108460063 OS=Gossypium arboreum OX=29729 GN=LOC108460063 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 65  MWAIFKRSLRRESRKMK-LLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFEL 124
           +WAIFKR L++ES + K +LGSAFKWKRL     SF+D+LLFKI S+ E + L++     
Sbjct: 6   IWAIFKRLLKKESWRWKYVLGSAFKWKRLNIHHFSFLDDLLFKIASIFEAIFLVSTLCFF 65

Query: 125 HLC 127
           +LC
Sbjct: 66  YLC 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019527.15.4e-103100.00hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583910.16.7e-3785.15hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012520.12.2e-2486.11hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyro... [more]
KJB57280.15.5e-0745.45hypothetical protein B456_009G156500 [Gossypium raimondii][more]
EOY27743.19.4e-0745.21Uncharacterized protein TCM_029517 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061GEB54.5e-0745.21Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1[more]
A0A6J1B6L15.9e-0750.82uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A5D2UMB91.0e-0653.97Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G243400v1 P... [more]
A0A5D2QA321.7e-0652.38Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G234200v1 P... [more]
A0A6P4MIU01.7e-0652.38uncharacterized protein LOC108460063 OS=Gossypium arboreum OX=29729 GN=LOC108460... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19929-RACarg19929-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane