Carg19903 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19903
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cationic amino acid transporter 1-like
Location	Carg_Chr13: 6945626 .. 6946176 (-)
RNA-Seq Expression	Carg19903
Synteny	Carg19903

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTATCAAATTGCTGGAAAAAGGCGGCGCAAAACATCTGGTACCTCCAATGTTCTTGGATTGCTCAAGTGTTGATTATGTTCACTAATCATGGCTTCATTATGTTCTATTTTGTTCACAATTCTGGAAAATTCAGATGGCTTCATTGCATCGACTCCTCTAGTTTCTGTTAGGAATCAGGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCCAAAAGGCCTCATACCCCCAATCCCAATAATCCTCAACAATCCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGGTCACTTTTGACCACATCTTCGAGGCTCTATTGGCATGGTTAGGTTTAGGGCATGGCTCTGATACCATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAAGTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAAGCCTCATACCAATGGAGATAGTATTCCTCACTCATAA

mRNA sequence

ATGAAGTTATCAAATTGCTGGAAAAAGGCGGCGCAAAACATCTGGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCCAAAAGGCCTCATACCCCCAATCCCAATAATCCTCAACAATCCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGGTCACTTTTGACCACATCTTCGAGGCTCTATTGGCATGGTTAGGTTTAGGGCATGGCTCTGATACCATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAAGTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAAGCCTCATACCAATGGAGATAGTATTCCTCACTCATAA

Coding sequence (CDS)

ATGAAGTTATCAAATTGCTGGAAAAAGGCGGCGCAAAACATCTGGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCCCCAAAAGGCCTCATACCCCCAATCCCAATAATCCTCAACAATCCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGGTCACTTTTGACCACATCTTCGAGGCTCTATTGGCATGGTTAGGTTTAGGGCATGGCTCTGATACCATGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAAGTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAAGCCTCATACCAATGGAGATAGTATTCCTCACTCATAA

Protein sequence

MKLSNCWKKAAQNIWTLHNGMILSTLSISSHGFALSFPKRPHTPNPNNPQQSSPRTKHTISLPLIEARLLSLEVTFDHIFEALLAWLGLGHGSDTMLGITTLHNGMILSTLSIKSHGFALGFPKKPHTNGDSIPHS

Homology

[Close]

BLAST of Carg19903 vs. NCBI nr
Match: KAG7019552.1 (hypothetical protein SDJN02_18513, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.2 bits (718), Expect = 4.8e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MKLSNCWKKAAQNIWTLHNGMILSTLSISSHGFALSFPKRPHTPNPNNPQQSSPRTKHTI 60
           MKLSNCWKKAAQNIWTLHNGMILSTLSISSHGFALSFPKRPHTPNPNNPQQSSPRTKHTI
Sbjct: 1   MKLSNCWKKAAQNIWTLHNGMILSTLSISSHGFALSFPKRPHTPNPNNPQQSSPRTKHTI 60

Query: 61  SLPLIEARLLSLEVTFDHIFEALLAWLGLGHGSDTMLGITTLHNGMILSTLSIKSHGFAL 120
           SLPLIEARLLSLEVTFDHIFEALLAWLGLGHGSDTMLGITTLHNGMILSTLSIKSHGFAL
Sbjct: 61  SLPLIEARLLSLEVTFDHIFEALLAWLGLGHGSDTMLGITTLHNGMILSTLSIKSHGFAL 120

Query: 121 GFPKKPHTNGDSIPHS 137
           GFPKKPHTNGDSIPHS
Sbjct: 121 GFPKKPHTNGDSIPHS 136

[Close]

BLAST of Carg19903 vs. NCBI nr
Match: XP_022954448.1 (cationic amino acid transporter 1-like [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-06
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 96  MLGITTLHNGMILSTLSIKSHGFALGFPKKPHTNGDSI 134
           +L IT L+N MILSTLSI SHGF+LG PK+PHT+GDSI
Sbjct: 474 LLEITALYNSMILSTLSISSHGFSLGLPKRPHTDGDSI 511

[Close]

BLAST of Carg19903 vs. NCBI nr
Match: KAG7025324.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-04
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 63  PLIEARLLSLEVTFDHIFEALLAWLGLGHGSDTMLGITTLHNGMILSTLSIKSHGFALGF 122
           PL+  +   LE       +  +    L      +LGIT LH GMILS LSI S+GFALGF
Sbjct: 653 PLLGPKESELETVIPLHIDGTVVLHPLHEADKALLGITNLHIGMILSILSISSNGFALGF 712

Query: 123 PKKPHTNGD 132
           PK+ +TN D
Sbjct: 713 PKRLYTNED 721

[Close]

BLAST of Carg19903 vs. ExPASy TrEMBL
Match: A0A6J1GR43 (cationic amino acid transporter 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456712 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 96  MLGITTLHNGMILSTLSIKSHGFALGFPKKPHTNGDSI 134
           +L IT L+N MILSTLSI SHGF+LG PK+PHT+GDSI
Sbjct: 474 LLEITALYNSMILSTLSISSHGFSLGLPKRPHTDGDSI 511

The following BLAST results are available for this feature:

BLAST of Carg19903 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019552.1	4.8e-72	100.00	hypothetical protein SDJN02_18513, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022954448.1	4.6e-06	73.68	cationic amino acid transporter 1-like [Cucurbita moschata]	[more]
KAG7025324.1	3.3e-04	44.93	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Carg19903 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR43	2.2e-06	73.68	cationic amino acid transporter 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Carg19903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19903-RA	Carg19903-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity