Carg19779 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19779
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin-protein ligase ATL41-like
Location	Carg_Chr02: 1135705 .. 1136136 (+)
RNA-Seq Expression	Carg19779
Synteny	Carg19779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

mRNA sequence

ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTAGGTTTTCTTTTGGCCATCAGTTTCTTCAACACTTACGTATGGATCCCGCTGCTTCGTCTCAAGGATGCGATTATTGGCGGCGTTAGCGTTTTCCGCCTCGCATTTGTACCGGAATCGGACGGCTCAAGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAGCGGAGGAGGAGATTTGTTCTATCTGTTTGATGGAATTCGCGAGAGGAGATTCCGTGTGCGTATTACCGGATTGTTCCCACGTTTTTCATTTCGATTGCATCGAGAAGTGGCTCGAGAGAAATCGCTTCACTTGCCCGCTCTGTAGGTGCTTCTTCTTCTTCAACATCAGGAATCGCCATGAGAGGAAGCTCCAATTCGTCGTTCCAGATAATCCTTCTTGCCTCTATTACTTCTTGCAGTGA

Protein sequence

MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ

Homology

[Close]

BLAST of Carg19779 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 7.3e-79
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS 60
           MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS
Sbjct: 1   MLGFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRS 60

Query: 61  DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIR 120
           DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIR
Sbjct: 61  DDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIR 120

Query: 121 NRHERKLQFVVPDNPSCLYYFLQ 144
           NRHERKLQFVVPDNPSCLYYFLQ
Sbjct: 121 NRHERKLQFVVPDNPSCLYYFLQ 143

[Close]

BLAST of Carg19779 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 63
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 90  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 149

Query: 64  AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 123
           AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 150 AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 209

Query: 124 ERKLQFVVPDNPSCLYYFLQ 144
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 210 ERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Carg19779 vs. NCBI nr
Match: XP_023533802.1 (uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 63
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 83  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 142

Query: 64  AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 123
           AEEEICSICLMEFARGDSVCVLPDCSHVFHF CIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 143 AEEEICSICLMEFARGDSVCVLPDCSHVFHFGCIEKWLERNRFTCPLCRCFFFFNIRNRH 202

Query: 124 ERKLQFVVPDNPSCLYYFLQ 144
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 203 ERKLQFVVPDNPSCLYYFLQ 222

[Close]

BLAST of Carg19779 vs. NCBI nr
Match: XP_022971128.1 (RING-H2 finger protein ATL18 [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 10  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEIC 69
           FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEIC
Sbjct: 7   FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEEIC 66

Query: 70  SICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQF 129
           SICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCPLCRCFFFFNI NRHERKLQF
Sbjct: 67  SICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKLQF 126

Query: 130 VVPDNPSCLYYFLQ 144
           VVPDNPSCLYYFLQ
Sbjct: 127 VVPDNPSCLYYFLQ 140

[Close]

BLAST of Carg19779 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA- 65
           LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTE 72

Query: 66  EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHE 125
           EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 126 RKLQFVVPDNPSCLYYFLQ 144
           RKL+FVVPDNPS LYYFLQ
Sbjct: 133 RKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg19779 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-12
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 61  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF-- 120
           D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 121 ----NIRNRH 124
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]

BLAST of Carg19779 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 74
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 75  CLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 113
           CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]

BLAST of Carg19779 vs. ExPASy Swiss-Prot
Match: Q9FKX5 (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 41  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW 100
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 101 LERNRFTCPLCR 113
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]

BLAST of Carg19779 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 22  LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI-CSICLMEFARGD 81
           L  A I  + VF    +  S G  GG             +  A+E   C++CL EF+  D
Sbjct: 108 LDQAFIDALPVFHYKEIVGSAGGGGG-------------NGAAQEPFDCAVCLCEFSEKD 167

Query: 82  SVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF 117
            + +LP CSH FH +CI+ WL+ N  TCPLCR   F
Sbjct: 168 KLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCRGTLF 189

[Close]

BLAST of Carg19779 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 69  CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFF 117
           C++CL EF+  D + +LP+CSH FH DCI+ WL  N  TCPLCR   F
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLF 190

[Close]

BLAST of Carg19779 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.5e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 4   FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 63
           FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR
Sbjct: 90  FLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDR 149

Query: 64  AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 123
           AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH
Sbjct: 150 AEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 209

Query: 124 ERKLQFVVPDNPSCLYYFLQ 144
           ERKLQFVVPDNPSCLYYFLQ
Sbjct: 210 ERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Carg19779 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 10  FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEIC 69
           FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQR  DRAEEEIC
Sbjct: 7   FFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRAEEEIC 66

Query: 70  SICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKLQF 129
           SICLMEFARGDSVCVL DCSHVFHF CIEKWLERNRFTCPLCRCFFFFNI NRHERKLQF
Sbjct: 67  SICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKLQF 126

Query: 130 VVPDNPSCLYYFLQ 144
           VVPDNPSCLYYFLQ
Sbjct: 127 VVPDNPSCLYYFLQ 140

[Close]

BLAST of Carg19779 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.9e-57
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA- 65
           LAI FFNT+VWIPL R+K+AI+G  SVFRL  +PE D S GGTLLVRRYEELQRSDDRA 
Sbjct: 13  LAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRRYEELQRSDDRAE 72

Query: 66  EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHE 125
           EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132

Query: 126 RKLQFVVPDNPSCLYYFLQ 144
           +KL+FVVPDNPS LYYFLQ
Sbjct: 133 KKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg19779 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.7e-37
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 8   ISFFNTYVWIPLLRLKDAIIGGV-SVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEE 67
           I FFNT++WIPL R+  AI+G V +VF L   P S       L+VR Y+E    D  + E
Sbjct: 5   ILFFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSE 64

Query: 68  EICSICLMEFAR-GDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHER 127
           EICSICL EF R GDSVC LP+C H+FHF+CI++W++RNRFTCPLCRCFFFF    + + 
Sbjct: 65  EICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDT 124

Query: 128 KLQFVVPDNPSCLYYFLQ 144
           K  F+VPDNPS LYYFLQ
Sbjct: 125 KWSFLVPDNPSSLYYFLQ 135

[Close]

BLAST of Carg19779 vs. ExPASy TrEMBL
Match: A0A6J1CHK3 (RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.9e-35
Identity = 84/140 (60.00%), Postives = 97/140 (69.29%), Query Frame = 0


Query: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEEL-QRSDDRA 65
           L + F    V IPL  LK AI+   +VFR +  P            RRYEEL +R+D  A
Sbjct: 3   LPLIFVYDLVCIPLFHLKQAILSLATVFRFSSPPG-----------RRYEELRRRNDGTA 62

Query: 66  EEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRH 125
           E+E+ CSICL EFAR DSV  LPDC+HVFH +CIEKW+ERN FTCPLCRC  FFNI NR 
Sbjct: 63  EDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCRC--FFNIENRP 122

Query: 126 ERKLQFVVPDNPSCLYYFLQ 144
           E KL+FV+PDNPSCLYYFLQ
Sbjct: 123 E-KLRFVIPDNPSCLYYFLQ 128

[Close]

BLAST of Carg19779 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-13
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 61  DDRAEEEI-CSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFF-- 120
           D   EEEI C ICL+EF   D+V  LP C+H+FH +CIE WL R   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

Query: 121 ----NIRNRH 124
               N+ N H
Sbjct: 113 PPTQNVNNAH 122

[Close]

BLAST of Carg19779 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  VWIPLLR---LKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSI 74
           V+ P LR   L +++I  + +F+  F    D + G        EE +RS +      CS+
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFK--FKKRYDQNDGVFTGEGEEEEEKRSQE------CSV 148

Query: 75  CLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 113
           CL EF   + + ++P+CSH+FH DCI+ WL+ N   CPLCR
Sbjct: 149 CLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCR 180

[Close]

BLAST of Carg19779 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-11
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 37  FVPESDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDC 96
           F P +   +G  L V R+ EL R    +  + C++CL EF   D +  L +C H+FH  C
Sbjct: 73  FFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRRLTNCQHIFHRSC 132

Query: 97  IEKW-LERNRFTCPLCRCFF 116
           +++W +  N+ TCPLCR  F
Sbjct: 133 LDRWMMGYNQMTCPLCRTPF 152

[Close]

BLAST of Carg19779 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 41  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW 100
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 150 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 101 LERNRFTCPLCR 113
           L R+  +CPLCR
Sbjct: 210 LRRHA-SCPLCR 218

[Close]

BLAST of Carg19779 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 41  SDGSSGGTLLVRRYEELQRSDDRAEEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKW 100
           S G +G +L   R  +++ +D   E   CS+CL +F  G++V  LP C H+FH  CI+KW
Sbjct: 174 SKGLTGDSL--NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 233

Query: 101 LERNRFTCPLCR 113
           L R+  +CPLCR
Sbjct: 234 LRRHA-SCPLCR 242

The following BLAST results are available for this feature:

BLAST of Carg19779 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604984.1	7.3e-79	100.00	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022947864.1	3.1e-77	100.00	E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]	[more]
XP_023533802.1	2.0e-76	99.29	uncharacterized protein LOC111795545, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022971128.1	2.8e-70	96.27	RING-H2 finger protein ATL18 [Cucurbita maxima]	[more]
XP_023512248.1	4.6e-57	79.86	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19779 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	8.0e-12	50.00	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9LSW9	3.3e-10	36.63	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9FKX5	9.7e-10	43.06	NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV...	[more]
Q9FL07	1.3e-09	37.50	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q8GW38	1.7e-09	54.17	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of Carg19779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G855	1.5e-77	100.00	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I5X8	1.3e-70	96.27	RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV...	[more]
A0A6J1FTE6	4.9e-57	79.14	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A0A0KFW5	5.7e-37	57.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 P...	[more]
A0A6J1CHK3	6.9e-35	60.00	RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4...	[more]

BLAST of Carg19779 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	5.7e-13	50.00	RING/U-box superfamily protein	[more]
AT5G43420.1	2.4e-11	36.63	RING/U-box superfamily protein	[more]
AT5G41400.1	5.3e-11	37.50	RING/U-box superfamily protein	[more]
AT5G66070.1	6.9e-11	43.06	RING/U-box superfamily protein	[more]
AT5G66070.2	6.9e-11	43.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 69..111 e-value: 1.6E-7 score: 41.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 68..112 e-value: 2.9E-14 score: 53.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 69..112 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..115 e-value: 2.5E-19 score: 70.3
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 7..117
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 7..117
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 69..112 e-value: 3.94814E-16 score: 65.4009
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 57..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19779-RA	Carg19779-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane