Carg19731 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19731
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptioncGMP-specific 3',5'-cyclic phosphodiesterase
LocationCarg_Chr16: 1550964 .. 1552174 (-)
RNA-Seq ExpressionCarg19731
SyntenyCarg19731
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGTAATGGTCAAGAACTTTGGAAGAGGCCTATTTTTTTTGTACTAATTTTTAATTATACTCCTCAACGTTTACAAATATCATTTTTAAAACTTTAAATTAACGTAACTTTTTTGTTAAATGAAGATGAAAAAACAACGTGACAATGACCTATAAAATAATGGTACACGTTGACGTAATAAAGGTGACATGTTTTAATTATATCATTAAACTTTAAGATATGTTTCAATTATATCCTTAATGTTTCTAATTTTCATTTTAACCCTAAGTTATCGTCACGTTGGAATGAACATTTTTCGTTGCTGATCGTATCTATTATTTTTCAGAGTGTGAGAGAGAAATAGAAAAAGAAAGAGATCCCGTTGAATCGAAATTTAAAAGCTCGAACAATATAATAACGAAAATGAACTTCAATCTTACAAACCGACACAAATATTGAAAACACACAACAATTGTGATAATAATAAAACCTTAAACTCCACACACAAACTACCCAACAAGAATCATGGCTGCAAATAACCAACCAAGCTTAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

mRNA sequence

ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

Coding sequence (CDS)

ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

Protein sequence

MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEGNEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGDIWKAS
Homology
BLAST of Carg19731 vs. NCBI nr
Match: KAG7014899.1 (hypothetical protein SDJN02_22530, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 444.9 bits (1143), Expect = 4.2e-121
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0

Query: 1   MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGF 60
           MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGF
Sbjct: 1   MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGF 60

Query: 61  GKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEG 120
           GKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEG
Sbjct: 61  GKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEG 120

Query: 121 NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV 180
           NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV
Sbjct: 121 NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV 180

Query: 181 VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGDIWKAS 227
           VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGDIWKAS
Sbjct: 181 VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGDIWKAS 226

BLAST of Carg19731 vs. NCBI nr
Match: KAG6576875.1 (hypothetical protein SDJN03_24449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 216/221 (97.74%), Postives = 217/221 (98.19%), Query Frame = 0

Query: 1   MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGF 60
           MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIF RVGF
Sbjct: 1   MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFERVGF 60

Query: 61  GKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEG 120
           GK GNDGNPIGTTGKFGSVGEPVYKRWWAA+PTSMLESVKATMKGEEEAAGGGDKNGMEG
Sbjct: 61  GKVGNDGNPIGTTGKFGSVGEPVYKRWWAAQPTSMLESVKATMKGEEEAAGGGDKNGMEG 120

Query: 121 NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV 180
           NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV
Sbjct: 121 NEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGV 180

Query: 181 VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGD 222
           VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKV  D
Sbjct: 181 VCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVKHD 221

BLAST of Carg19731 vs. NCBI nr
Match: KAG7014900.1 (hypothetical protein SDJN02_22531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-15
Identity = 75/176 (42.61%), Postives = 95/176 (53.98%), Query Frame = 0

Query: 11  IVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGN-------VGCGIFGRVGFGKA 70
           I G +GK GS   G+GG   P GMF G+LGSGG + L +       VG G  G  G G +
Sbjct: 34  IDGRDGKVGSEDDGNGGKAAPAGMFIGELGSGGSVGLESDGILDPVVGFGNMGDAGRGGS 93

Query: 71  GNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEGNEA 130
            +     G  G+ GS G  V +R   ARP  +        +GEE AAGGG + G++G   
Sbjct: 94  AHGLGSNGIGGRVGSEGGAVCRRCRVARPLGL-------HQGEEVAAGGGVRKGIDGK-- 153

Query: 131 GMVGIDAIVGSGGSAAPLGMLTGKLGKGNV----GCGRFGRAGNGGIPVGTTGKFG 176
            ++G D  VGSGG+  P+GML GKLG+G +    GCGR G     GIP GT GK G
Sbjct: 154 -VIGKDGRVGSGGNVTPVGMLPGKLGRGGILGREGCGRLGIE---GIP-GTVGKGG 195

BLAST of Carg19731 vs. NCBI nr
Match: XP_027076805.1 (uncharacterized protein LOC113700525 [Coffea arabica])

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-10
Identity = 82/220 (37.27%), Postives = 97/220 (44.09%), Query Frame = 0

Query: 40  GSGGRLTLGNVGCGIFGRVGFGKAG------------NDGNPIGTTGKF--------GSV 99
           G GGR TLG V  GI G VGFGK G            N GN +G  G+         G  
Sbjct: 9   GMGGRATLGIV--GIVGNVGFGKGGRFVGNVGKGVLDNGGNVVGKFGRVVPGNVGIAGIT 68

Query: 100 GEPVYKRWWAARPTSMLESVKATMKGE-----EEAAGGGDKNGMEGNEAG-MVGIDAIV- 159
           G  V   W AA  + MLE+ KA  K       EE  GGG+K G+EGNE G +VGI  IV 
Sbjct: 69  GGEVCNSWRAAWLSWMLENDKAMRKARKKQTLEELDGGGEKKGIEGNEVGILVGIGGIVD 128

Query: 160 GSGGSAAPLGM----------LTGKLGK--GNVGCGRFGRAGN-----GGIPVGTTGKFG 216
           G  G+    GM          + GK G+  GNVG G     GN     G +  G  G  G
Sbjct: 129 GIFGNEVAAGMGGRATFGTAGIVGKDGRFVGNVGKGVLDNGGNVVGKFGRVVPGNVGIAG 188

BLAST of Carg19731 vs. NCBI nr
Match: TYK29414.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-09
Identity = 57/133 (42.86%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 107 EEAAGGGDKNGMEGNEAGMVGIDA--------IVGSGGSAAPLGMLTGKLGK------GN 166
           EE AGGG+KNG   ++  +VGID         +VG GG+A  +GM  G+LG       G 
Sbjct: 278 EEVAGGGEKNG--SDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGR 337

Query: 167 VGCGRFGRAGNGGIPVGTTGKFGTKD-----------GVVCKRWRAAWPMSILERAKVAM 215
            G G+FG  G  G PVGT G+ GT D           G+VC+R R     S LE AKV M
Sbjct: 338 EGSGKFGMDGILG-PVGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTM 397

BLAST of Carg19731 vs. ExPASy TrEMBL
Match: A0A0A0L0M4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 70/105 (66.67%), Postives = 77/105 (73.33%), Query Frame = 0

Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRA-----GNGGIP 177
           MEGNE GMVGID      IVGSGG+A+P+G   GKL  GNVGCG FGR      GNGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           VG  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

BLAST of Carg19731 vs. ExPASy TrEMBL
Match: A0A0A0L399 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.4e-23
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 118 MEGNEAGMVGI-----DAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRA-----GNGGIP 177
           MEGNE GMVGI       IVGSGG+A+P+G   GKL  GNVGCG FGR      GNGGI 
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVGSGGNASPIGS-GGKLIFGNVGCGNFGRVGFGKPGNGGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           VG  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

BLAST of Carg19731 vs. ExPASy TrEMBL
Match: A0A0A0KYM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRA-----GNGGIP 177
           MEGNE GMVGID      IVGSGG+ +P+    GKL  GNVGCG+FGR      GNGGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIES-GGKLTFGNVGCGKFGRVGFGKPGNGGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLE 210
           VG  G+FGTK GVVC+RWR AWP  +LERAKVA+K  IKN E
Sbjct: 61  VGIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

BLAST of Carg19731 vs. ExPASy TrEMBL
Match: A0A5D3E0R8 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00040 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 57/133 (42.86%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 107 EEAAGGGDKNGMEGNEAGMVGIDA--------IVGSGGSAAPLGMLTGKLGK------GN 166
           EE AGGG+KNG   ++  +VGID         +VG GG+A  +GM  G+LG       G 
Sbjct: 278 EEVAGGGEKNG--SDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGR 337

Query: 167 VGCGRFGRAGNGGIPVGTTGKFGTKD-----------GVVCKRWRAAWPMSILERAKVAM 215
            G G+FG  G  G PVGT G+ GT D           G+VC+R R     S LE AKV M
Sbjct: 338 EGSGKFGMDGILG-PVGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTM 397

BLAST of Carg19731 vs. ExPASy TrEMBL
Match: A0A5A7TL95 (Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00040 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 57/133 (42.86%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 107 EEAAGGGDKNGMEGNEAGMVGIDA--------IVGSGGSAAPLGMLTGKLGK------GN 166
           EE AGGG+KNG   ++  +VGID         +VG GG+A  +GM  G+LG       G 
Sbjct: 282 EEVAGGGEKNG--SDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGR 341

Query: 167 VGCGRFGRAGNGGIPVGTTGKFGTKD-----------GVVCKRWRAAWPMSILERAKVAM 215
            G G+FG  G  G PVGT G+ GT D           G+VC+R R     S LE AKV M
Sbjct: 342 EGSGKFGMDGILG-PVGTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTM 401

BLAST of Carg19731 vs. TAIR 10
Match: AT1G55990.1 (glycine-rich protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 111 GGGDKNGMEGNEAGMVGIDA-IVGSGGSAAPL----GMLTGKLGK--------GNVGCGR 170
           GGG+KNGM+G   G  G+D  +VG  G    L    G++ G  GK        G  GCG+
Sbjct: 12  GGGEKNGMDGRLVGREGMDGRLVGREGMDGRLVGREGIVVGNEGKVGIAVGMVGRFGCGK 71

Query: 171 FGRAGNGGIPVGTTGKFG----TKDGVVC--KRWRAAWPMSILERAKVAMKTTIKNLEEA 217
               GNG I VG  GK G      +G  C  +R  A   + I+E   +  K   K+L +A
Sbjct: 72  ADGIGNGDIAVGIVGKDGCGNVDGNGGCCWRRRREAEQVLIIIEEETLTKKAMRKSLYDA 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7014899.14.2e-121100.00hypothetical protein SDJN02_22530, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576875.11.3e-11497.74hypothetical protein SDJN03_24449, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014900.11.1e-1542.61hypothetical protein SDJN02_22531, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_027076805.15.1e-1037.27uncharacterized protein LOC113700525 [Coffea arabica][more]
TYK29414.14.3e-0942.86beta carbonic anhydrase 5 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0M41.5e-2366.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1[more]
A0A0A0L3997.4e-2365.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1[more]
A0A0A0KYM45.3e-2162.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1[more]
A0A5D3E0R82.1e-0942.86Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G0... [more]
A0A5A7TL952.1e-0942.86Carbonic anhydrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00... [more]
Match NameE-valueIdentityDescription
AT1G55990.11.5e-0436.00glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19731-RACarg19731-RAmRNA