Carg19718 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19718
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 1621792 .. 1623292 (-)
RNA-Seq ExpressionCarg19718
SyntenyCarg19718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCACCTTTGGTTGTGAAAATAAGTTGTGCCTTGGCTTATTTCTTCACCTCTTCGTACTCGGCTTCGGGGGCTTGTTCGCCACCCTGAGATCCTCCAGAAGCGGAGCCACCACCGGAACCACCAGCCATGTGTTGCCCAATCTTGGAAACAGCCTTGTTGGCGGCATCAAGTTTCGACTTAATCTCTTCAATGTTGTCTTCTGACATTGCCTTCCTCAACTCTGCCACCGCATCCTCGATTTCTTTGGCAACCTCACTTGGTATTTTCTCCCTATATTCACCCAAGCTCTTCTCGATGCTGTATATGGTAGTATCTGCACTGTTTCTGATGTCAATAAGAGCCTTTCTCTCTTGATCCTTCTGGGCATGCAACTCTGCTTCTTTCACCATTTTCTCAATTTCATCTTCTGAGAGTCCTCCAGAAGATCGAATGGTGATTTGTTGCTCTTTACCGGTGGACTTGTCCTTTGCAGAGACGGTAACAATACCATTGGCATCGATGTCGAATGTCACTTCAATTTGAGGCAGTCCTCTTGGGGCAGGAGGAATTCCAACTAACTCGAACTCGCCTAGAAGCTTGTTGTCAGAGGCCATTTCCCTCTCACCTTGCAATACCTTGATACCCACCTGGGTCTGATTGTCAGCTGCGGTTGAGAACACCTGCAATGATGGGAATTCAAATAATTACAAACGAAAAAATTATCAGCCTCAACCTACTGTTGTTGATTAAATTAATTGATCCATTAGACAAATATCTATAACTTTAAATCCCTACTTGATCCAGCGATTGACCCCTACCTACTACAGTTATCGGTCAATGTGGAAGGTATTCGTTTCTAGAACATGCTCGCACTTACAAAAAGGTGGGGATGAGGAAAGGAATAACTTGTCACACCAACATGCACACACTAAATATAGTGAATAGGTTTCAAAGATTTACCTGGCTCTTCTTAGTTGGAATGGTAGTGTTCCGACTGATCAACCGTGTAAAGATCCCCCCAAGTGTCTCAATACCGAGCGATAGAGGGGTAACATCCAATAGAAGCAATTCTTTGACATCACCACGAAGAATGCCACCCTGAATTGCAGCTCCCATAGCAACTGCTTCATCAGGGTTCACTCCTTTGCTGGGGCTCTTTCCAAAAATTTCTGTGACAACCTCTTGCACCTTTGGTACACGAGTCATTCCACCAACTAAAAGAACTTCATCGACATCTTTGATAGAAATACTGGCATCCTTTAAACAATTTTTACATGGGGCCTTGGTCCTTTCAATCAAGTGATTAACAAGGCTTTCAAACTTCGACCTGGTCAAAGTGATGTTCAAATGCTTTGCACCAGATGCATCAGCAGTGATAAATGGCAGGTTAATCTCAGTCTGTGATGTAGATGATAGTTCAATCTTTGCCTTTTCTGCAGCTTCTCTAAGCCTCTGCAAGGCAAGCTTGTCCTTGGTAAGGTCAATTCCCTCAGTTCGTTTGAACTCGCTCACTAG

mRNA sequence

ATGGAGAGCACCTTTGGTTGTGAAAATAAGTTGTGCCTTGGCTTATTTCTTCACCTCTTCGTACTCGGCTTCGGGGGCTTGTTCGCCACCCTGAGATCCTCCAGAAGCGGAGCCACCACCGGAACCACCAGCCATGTGTTGCCCAATCTTGGAAACAGCCTTGTTGGCGGCATCAACTTCTCTAAGCCTCTGCAAGGCAAGCTTGTCCTTGGTAAGGTCAATTCCCTCAGTTCGTTTGAACTCGCTCACTAG

Coding sequence (CDS)

ATGGAGAGCACCTTTGGTTGTGAAAATAAGTTGTGCCTTGGCTTATTTCTTCACCTCTTCGTACTCGGCTTCGGGGGCTTGTTCGCCACCCTGAGATCCTCCAGAAGCGGAGCCACCACCGGAACCACCAGCCATGTGTTGCCCAATCTTGGAAACAGCCTTGTTGGCGGCATCAACTTCTCTAAGCCTCTGCAAGGCAAGCTTGTCCTTGGTAAGGTCAATTCCCTCAGTTCGTTTGAACTCGCTCACTAG

Protein sequence

MESTFGCENKLCLGLFLHLFVLGFGGLFATLRSSRSGATTGTTSHVLPNLGNSLVGGINFSKPLQGKLVLGKVNSLSSFELAH
Homology
[Close]
BLAST of Carg19718 vs. NCBI nr
Match: KAG7014913.1 (hypothetical protein SDJN02_22544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 8.0e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MESTFGCENKLCLGLFLHLFVLGFGGLFATLRSSRSGATTGTTSHVLPNLGNSLVGGINF 60
          MESTFGCENKLCLGLFLHLFVLGFGGLFATLRSSRSGATTGTTSHVLPNLGNSLVGGINF
Sbjct: 1  MESTFGCENKLCLGLFLHLFVLGFGGLFATLRSSRSGATTGTTSHVLPNLGNSLVGGINF 60

Query: 61 SKPLQGKLVLGKVNSLSSFELAH 84
          SKPLQGKLVLGKVNSLSSFELAH
Sbjct: 61 SKPLQGKLVLGKVNSLSSFELAH 83

The following BLAST results are available for this feature:
BLAST of Carg19718 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014913.18.0e-38100.00hypothetical protein SDJN02_22544, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19718 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19718 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19718 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19718-RACarg19718-RAmRNA