Carg19717 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19717
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 1623843 .. 1624370 (-)
RNA-Seq ExpressionCarg19717
SyntenyCarg19717
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAAGGAGGGGTCTGAAAGACAGACACCCAAAACGGAGAGCTACAACAAATCCCTCTCGCGCTGAACGTATTGGGCAGAGATTTGTCTGAATGAGGTACTAAATCTGTTCATTATTTACAAGTTGCAATCTCTTCAGCTGCTACACAATTGTGAATCAATCAAACCTTTGATACAACAACAGGGCTGTAAAATCTCCAGATAGAGGTCGGATTCAACCTCGCTATGGCCCTGAAGAAGAAGAAGAAGGGAGAAAGGGGAAGAGGAGGGGAAATAAATGTGAATCAGGTTTAGAGTCTTTTGAGTTTTTTGTACTCTTTTTTCGTGTACACATTATTACACTTATATACACATACGTTTCAATGTGAATCAAAGTGCAAAGCTTTTGCGGGGCGTGAAACTTGGATTCTAATATGATATTCCTAGATAACCCAGCTTTTTCTTTCTAATACTTTTCTAACCCTTGAATCCAGGGAGAGGAAATAAAGCCTGGATCCATCAACATTTCGTCTTCCTTCCATTAA

mRNA sequence

ATGGCAACAAGGAGGGGTCTGAAAGACAGACACCCAAAACGGAGAGCTACAACAAATCCCTCTCGCGCTGAACGTATTGGGCAGAGATTTATAGAGGTCGGATTCAACCTCGCTATGGCCCTGAAGAAGAAGAAGAAGGGAGAAAGGGGAAGAGGAGGGGAAATAAATGTGAATCAGGGAGAGGAAATAAAGCCTGGATCCATCAACATTTCGTCTTCCTTCCATTAA

Coding sequence (CDS)

ATGGCAACAAGGAGGGGTCTGAAAGACAGACACCCAAAACGGAGAGCTACAACAAATCCCTCTCGCGCTGAACGTATTGGGCAGAGATTTATAGAGGTCGGATTCAACCTCGCTATGGCCCTGAAGAAGAAGAAGAAGGGAGAAAGGGGAAGAGGAGGGGAAATAAATGTGAATCAGGGAGAGGAAATAAAGCCTGGATCCATCAACATTTCGTCTTCCTTCCATTAA

Protein sequence

MATRRGLKDRHPKRRATTNPSRAERIGQRFIEVGFNLAMALKKKKKGERGRGGEINVNQGEEIKPGSINISSSFH
Homology
[Close]
BLAST of Carg19717 vs. NCBI nr
Match: KAG7014914.1 (hypothetical protein SDJN02_22545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MATRRGLKDRHPKRRATTNPSRAERIGQRFIEVGFNLAMALKKKKKGERGRGGEINVNQG 60
          MATRRGLKDRHPKRRATTNPSRAERIGQRFIEVGFNLAMALKKKKKGERGRGGEINVNQG
Sbjct: 1  MATRRGLKDRHPKRRATTNPSRAERIGQRFIEVGFNLAMALKKKKKGERGRGGEINVNQG 60

Query: 61 EEIKPGSINISSSFH 76
          EEIKPGSINISSSFH
Sbjct: 61 EEIKPGSINISSSFH 75

The following BLAST results are available for this feature:
BLAST of Carg19717 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014914.13.5e-32100.00hypothetical protein SDJN02_22545, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19717 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19717 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19717 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19717-RACarg19717-RAmRNA