Carg19690 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19690
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	pre-mRNA-splicing factor CWC25-like isoform X2
Location	Carg_Chr16: 1765390 .. 1767203 (+)
RNA-Seq Expression	Carg19690
Synteny	Carg19690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGGTTTGTACTAAATTAAAGATTGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAACATTAATCTAGTTTGTTTGTCCTAAATTTCATGGTTTTATTGGCAGCATCAAAACGTTGTGTATTTTTATGGCCGAATTTAGCTGTAATTGCTATTATTCATTGCTTCTTTTCGTATGAGCTGCTGAACGGGGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTTTTAGAGATATCGTTGTACCTTCCCAGATGTAAATGAACTATTGTGGGGATTTCTTTTGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATAAAAGTGGTCATAGACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGAATTTTTTAAGAGACTGTTTAATGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTGATAAAATAAAGCCGTAGGATACGTTGCAACATGTTTTTTGCTGGGTCAACAAATGAAAACATATATTTTTTGAGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTGTATTTCTCTCTCCTTCCCCTGCTTTTCCCACTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTGGGCTGATGTTATTGGAATCTTGTTCAGCCCTGTGCCTTCAAGTGCATCCATGTATATTACTTAGGCTTGCCTGTGCATGTCTTATAACAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTCCTTTTAAGCTCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTGTTTTTTCTCTTGTTGCACGCCATGAGTACAGGTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACGTTACTGATCAAAGCTATTGCGCATGTATTGTTGTTGTTGTTATTGTTATTTCGACTGTCATAAATGTTAATTCTAAATATTTGGAGCAACTAAAAGATACTATTGTTTTTGTAGTTTATGTAGTCGTGCATGGGAAACTTTAGAATATCTCTTCAACCTTTCCATTCTTGTTTCGCTTCTCATGATTTAGTATCTGGGTTTGCCTTCTTTTTAGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

mRNA sequence

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

Coding sequence (CDS)

ATGGAACTCTGGTATGACATGAATATGTGGCTTACTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCAGCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGAAAACAGGAACAGTGATAGGAGGGATGGAGGGACTAAACATTCAATGAATCCCACTGAAGTACCACGATCAAGATCTTGTTTTCAGCATGACAAACGTGGTAATGATGGGCAAGTTGGTCGAAGCTTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGGAACGGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACAATAGCCACCGTGATGAGTCTTCGAAACTGGAGGATGATGCACCCACTTCTGCTCGGAAAAGGCCTGCATTTAGCGAGAAGAAGATTACAGTAGGCAATGAAAGTGGTGAGAAAGCAGCTATGGTATCAGAGATTCAGAAATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAATGA

Protein sequence

MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE

Homology

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: KAG7014939.1 (hypothetical protein SDJN02_22570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.4 bits (1147), Expect = 1.4e-121
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60
           MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH
Sbjct: 1   MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60

Query: 61  ECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSF 120
           ECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSF
Sbjct: 61  ECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSF 120

Query: 121 GRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLE 180
           GRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLE
Sbjct: 121 GRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLE 180

Query: 181 DDAPTSARKRPAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           DDAPTSARKRPAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE
Sbjct: 181 DDAPTSARKRPAFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 228

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: KAG6576912.1 (hypothetical protein SDJN03_24486, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109
Identity = 211/215 (98.14%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 14  TSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 73
           +SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG
Sbjct: 261 SSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 320

Query: 74  VSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERG 133
           VSKGENRNSDRRDGGTKHSMNPTEVPRSRS FQHDKRGNDGQVGRSFGRSFGRSATRERG
Sbjct: 321 VSKGENRNSDRRDGGTKHSMNPTEVPRSRSYFQHDKRGNDGQVGRSFGRSFGRSATRERG 380

Query: 134 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAF 193
           WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRD+SHRDES KLEDDAPTSARKRPAF
Sbjct: 381 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDDSHRDESWKLEDDAPTSARKRPAF 440

Query: 194 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE
Sbjct: 441 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 475

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_023521658.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 1.7e-101
Identity = 202/215 (93.95%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 14  TSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 73
           +SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG
Sbjct: 22  SSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYG 81

Query: 74  VSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERG 133
           VSKG NRNSDRRD  TKHSMNPTEVPRSRS FQH KRGNDGQV    G+SFGRSATRERG
Sbjct: 82  VSKGANRNSDRRDRRTKHSMNPTEVPRSRSYFQHVKRGNDGQV----GQSFGRSATRERG 141

Query: 134 WWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAF 193
           WWKDSREKEKDNDRASGKGTAYNSQQR+EMPQAVRD+SHRDESSKLEDDAPTSARKRPAF
Sbjct: 142 WWKDSREKEKDNDRASGKGTAYNSQQRNEMPQAVRDDSHRDESSKLEDDAPTSARKRPAF 201

Query: 194 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE
Sbjct: 202 SEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 232

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_023552844.1 (uncharacterized protein LOC111810369 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 167/183 (91.26%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MELWYDMNMWLTVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60
           MELW+DMNMWL VTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH
Sbjct: 1   MELWHDMNMWLIVTSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPH 60

Query: 61  ECSSALDSKPEYGVSKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSF 120
           ECSSALDSKPEYGVSKG NRNSDRRD  TKHSMNPTEVPRSRS FQH KRGNDGQV    
Sbjct: 61  ECSSALDSKPEYGVSKGANRNSDRRDRRTKHSMNPTEVPRSRSYFQHVKRGNDGQV---- 120

Query: 121 GRSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLE 180
           G+SFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQR+EMPQAVRD+SHRDESSKLE
Sbjct: 121 GQSFGRSATRERGWWKDSREKEKDNDRASGKGTAYNSQQRNEMPQAVRDDSHRDESSKLE 179

Query: 181 DDA 184
           D +
Sbjct: 181 DSS 179

[Close]

BLAST of Carg19690 vs. NCBI nr
Match: XP_038903819.1 (uncharacterized protein LOC120090316 [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 8.3e-77
Identity = 164/214 (76.64%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKH L+H GQDM+PHE S AL+SK E  V
Sbjct: 23  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHELRHVGQDMMPHESSLALESKLEGEV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
            KG  RNSD RDGGTKHS+NPTEVPRSRS FQHD+RGN GQV    GRSFG++AT ER W
Sbjct: 83  GKGAKRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERGNAGQV----GRSFGQTATSERSW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFS 194
           WKDS++ +KDNDRASGK TAYNSQQRDE PQA R++ H D SSKLE DA   ARKRPAF 
Sbjct: 143 WKDSKDPDKDNDRASGKTTAYNSQQRDEKPQAAREDRHHDGSSKLEVDALAPARKRPAFR 202

Query: 195 EKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           EKKITVGNE+GEKAAMV E +KSSD HQP++GRE
Sbjct: 203 EKKITVGNENGEKAAMVPESKKSSDLHQPQEGRE 232

[Close]

BLAST of Carg19690 vs. ExPASy TrEMBL
Match: A0A6J1E9N7 (uncharacterized protein LOC111430649 OS=Cucurbita moschata OX=3662 GN=LOC111430649 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.9e-77
Identity = 159/176 (90.34%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSS LDSKPEYGV
Sbjct: 23  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSPLDSKPEYGV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
           SKG NRNSDRRD GTKHS+NPTEVPRSRS  QH KRGNDGQV    GRSFGRSATRERGW
Sbjct: 83  SKGANRNSDRRDRGTKHSVNPTEVPRSRSYLQHVKRGNDGQV----GRSFGRSATRERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKR 191
           WKDSREKEKDNDRASGK TAYNSQQRDEMPQAVRD+SHRDESSK E DAPTSA K+
Sbjct: 143 WKDSREKEKDNDRASGKATAYNSQQRDEMPQAVRDDSHRDESSKQEVDAPTSAWKK 194

[Close]

BLAST of Carg19690 vs. ExPASy TrEMBL
Match: A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.6e-73
Identity = 157/217 (72.35%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRK LEEKLSRNSSSHVEDNKDRDQKH L+HEGQD  PHE S ALDS PE GV
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGGV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
           SKG NRNSD R+GGTK S+NPTEVPRSRS FQHDKRG+ GQV    GRSFGRS++  RGW
Sbjct: 83  SKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQV----GRSFGRSSSSGRGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSH---RDESSKLEDDAPTSARKRP 194
           WKDS+E++K++DRASGK   YNSQ+RDE+PQ V++++H   RD SSKLE D+   ARKRP
Sbjct: 143 WKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRP 202

Query: 195 AFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           AF EKKIT  NE+ EKA M SE +K SDPHQP+DGRE
Sbjct: 203 AFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRE 235

[Close]

BLAST of Carg19690 vs. ExPASy TrEMBL
Match: A0A0A0KV12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.6e-73
Identity = 158/214 (73.83%), Postives = 174/214 (81.31%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRS+RDRKTLEEKLSRNSSSHVEDNK+RDQKH L+  GQDMIPHE S AL+SKPE G 
Sbjct: 23  SPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRLVGQDMIPHESSLALESKPEGGA 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
             G NRNSD RDGGTKHS+NPTEVPRSRS FQHD+R N GQV    GRSFGRSAT ERGW
Sbjct: 83  GIGANRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERSNAGQV----GRSFGRSATSERGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSHRDESSKLEDDAPTSARKRPAFS 194
           WKDS++ +KD+DRASGK   Y SQQRDE PQA R++ H D SSKLE DA T ARKRPAF 
Sbjct: 143 WKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRHHDGSSKLEVDALTPARKRPAFR 202

Query: 195 EKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           EKKITV NE GEK AMV E +KS+D HQ ++GRE
Sbjct: 203 EKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRE 232

[Close]

BLAST of Carg19690 vs. ExPASy TrEMBL
Match: A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.6e-73
Identity = 157/217 (72.35%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRK LEEKLSRNSSSHVEDNKDRDQKH L+HEGQD  PHE S ALDS PE GV
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGGV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
           SKG NRNSD R+GGTK S+NPTEVPRSRS FQHDKRG+ GQV    GRSFGRS++  RGW
Sbjct: 83  SKGANRNSDEREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQV----GRSFGRSSSSGRGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSH---RDESSKLEDDAPTSARKRP 194
           WKDS+E++K++DRASGK   YNSQ+RDE+PQ V++++H   RD SSKLE D+   ARKRP
Sbjct: 143 WKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRP 202

Query: 195 AFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           AF EKKIT  NE+ EKA M SE +K SDPHQP+DGRE
Sbjct: 203 AFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRE 235

[Close]

BLAST of Carg19690 vs. ExPASy TrEMBL
Match: A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.9e-72
Identity = 155/217 (71.43%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 15  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQHEGQDMIPHECSSALDSKPEYGV 74
           SPKRSRRDRK LEEKLSRNSSSHVEDNKDRDQKH L+HEGQD+ PHE S ALDS PE GV
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGGV 82

Query: 75  SKGENRNSDRRDGGTKHSMNPTEVPRSRSCFQHDKRGNDGQVGRSFGRSFGRSATRERGW 134
           SKG NRNSD R+GGTK ++NPTEVPRSRS FQHDKRG+ GQV    GRSFGRS++  RGW
Sbjct: 83  SKGANRNSDEREGGTKRALNPTEVPRSRSYFQHDKRGSAGQV----GRSFGRSSSSGRGW 142

Query: 135 WKDSREKEKDNDRASGKGTAYNSQQRDEMPQAVRDNSH---RDESSKLEDDAPTSARKRP 194
           WKDS+E++K++DRASGK   YNSQ+RDE+PQ V++++H   RD SSKLE D+   ARKRP
Sbjct: 143 WKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRP 202

Query: 195 AFSEKKITVGNESGEKAAMVSEIQKSSDPHQPRDGRE 229
           AF EKKIT  NE+ EKA M SE +K SDPH P+DGRE
Sbjct: 203 AFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRE 235

The following BLAST results are available for this feature:

BLAST of Carg19690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014939.1	1.4e-121	100.00	hypothetical protein SDJN02_22570, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6576912.1	2.2e-109	98.14	hypothetical protein SDJN03_24486, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023521658.1	1.7e-101	93.95	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]
XP_023552844.1	1.2e-83	91.26	uncharacterized protein LOC111810369 [Cucurbita pepo subsp. pepo]	[more]
XP_038903819.1	8.3e-77	76.64	uncharacterized protein LOC120090316 [Benincasa hispida]	[more]

BLAST of Carg19690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9N7	6.9e-77	90.34	uncharacterized protein LOC111430649 OS=Cucurbita moschata OX=3662 GN=LOC1114306...	[more]
A0A6J1FPJ0	4.6e-73	72.35	pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0KV12	4.6e-73	73.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1	[more]
A0A6J1FQX4	4.6e-73	72.35	pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JAV5	3.9e-72	71.43	pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Carg19690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..228
None	No IPR available	PANTHER	PTHR36364	OS03G0203000 PROTEIN	coord: 14..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19690-RA	Carg19690-RA	mRNA