Carg19655 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19655
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Dynein light chain
Location	Carg_Chr14: 11987061 .. 11989573 (-)
RNA-Seq Expression	Carg19655
Synteny	Carg19655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAACCTCTCTGTTCTTCTCTTACCCCTAGAACTCCACGGAAACATGAACCACGAATCCAAGCGCAACAATCCCAATCCTCTAATGGTGAAGCCGGAATCTGAGGATCGCAGAGCCTCATCTGTGGCCGCCGCCGCCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGCGACATGCAGAAGGAGGCTGTTGACATTGCTATAGCCGTTACTGCATCTTTCTCTCTCCAAATAATTAATCTCTCTCAATCTCATTACATATCATTTCTCAACTAATTCGTTCACAATCTGTTTCGTTTGTTGTTGTTGTTGTTTAGGCTTTTGAGAAGCATAGCGTCGAGAAGGATGTCGCCGAGCAGATAAAGAAGGAGTTCGATCAGAGACATGGCCCTACCTGGCATTGCATCGTCGGTCGTAATTTTGGTAGAGCCTTCCTGATTAATTTTCGCTTTCTTTCAGTCTGATGGACAGATTCTATATAAATTTCTATTACCTTAGCCTCTCGGAAATGCTTCTCTAACTTCAAGTTCAGTCTGTAGCTTTTTTCCCCCTACTGAAATGGAGATCTAGCTCTTAAGTAACTCTATTGGAGAATTTTGGCTCCATTTGGTCCATTGCCCTACTCTATATTGAATTTGCTAGCTAATTATCCGCTACAGCAATCTTGTCTGCCTACATGAATTGAATATCATTGGATGGTCTTGCCATGGTTGGTGGCAACCAGGGTAGGGGCTTCCCATCTACTTTTGATGATGAGGTCAACAAACATAGTGAGATAGAATTGTTTTGAACTAGAGCTGACTTCACTGTGATATTTTCTCTTTAGCAGTTTTTGTTGAACATGACTCAATCTGATATATTCATGGTTCTGTTTGCACTGTGAAAGGTAGGAATCAAAATATACCGTGTCATGTTTTATTTGAGCGTCAAATGTTAAGTTCTTGGTGTTTATGGGATCCAAAAGATTGCCTGACAAGACATAAGGAGGTGATCTGCAACTTTCTCTCTTTGTGCTGTTAGGGACACAAACAATTCTTATAGTCCAAGAATCAAAGGCTTTGATCAATGATCACAAGGACACATAGAGCCATGTTGAGGATTGTTGGGAGTGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAAGAAATACATCTCCATTGGTGTGAGGCCTTTTGGGAAACCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAAGATCATATCATTGTGGAGAGTCGCGTTCATTTAACATGGTACTAGAGCCATGCTCTAAACTTAGCCATGACAATAGAATCCTCAAATATCGAACAAAGATTGTGAGCCTCGGAAAAGTGTCGAGATTGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGTGAGTCCCATATTGGGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAAGAAATACATCTCTATTGGTGTGAGGCCTTTTGGGGAAGCCGAAAGCAAAGTCACGAGAGCTTCAAAGTAGACAACATTATACCATTGCGGAGAGTCGTGTTTATTTAACAAGCCATGTTAATATAAACTTTCAGGAGTAAACTCTTTTTATCATGCCATACCAAGATTTAGAGCTGAATGCTAAATGCATGGAGCTTAAGTTGGAATGTAACTTGCAGGTCGGTACTGCTCCCGCTCGTGGTTTCGGTTACCTTATAGAGCCCAAAATTTTCCTTTACATGGCCAATCCACTCATCACAAGCCTTTGAAAGAACAGGGTGGTATTAGTGAACCATTTAGTTTTTTCATTTTGGCTGAGCGAACTTAATTGCTAACAGCCGTAAAAATTGCAGGCTCTTGTAGTTATTGTGTTAGCAGATGCAAAGAACTTCTAACAGTTTTACTTGCTTGGCTTCATATCGATAATTTAAAAATTCTATAAAAACATGCTCCCTCTTCTCGTTGAATGTTGTAGTGCATTGTCTTGTTCTTGATTATGGAGCTTTATTCAGTGCCCGATTAGTGTTAGTTCAGCCTGTATTTAATTAATATCAGGGATGATTCTATTCTCTGGTTTGTGTTTCAGGTTCTTATGTGACACACGAGTCGAACCATTTTGTTTACTTCTACCTGGACCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGGTTGATCTCCCCTTGACAACGATGCCACCGAGTAGTTTGGCGAGCCTGCGACGATGGCGCTACAACTATTTCCTGTATGTATAATCTATTCTGCCAGTATATAAATCACTTGGTGTAGCATTTTATATATTATAACTGATATATCAGTGGGCAGTAAATTAAATGGTGAAACAAGAAATTCAATGTAAATGCATTTACATGATGTCTCAAAGGGGGTCTCTTTGGCGATGTCATTAAAACAGAATGCAGTTCAGAATCCGAGGCTCTAGATCCTACGTCGGGAAACAAAACATTCTTTATAAGGGTGTGAAAACTCTTCTCCAGCAGACGTGTTTTAAAACTGTG

mRNA sequence

TCAACCTCTCTGTTCTTCTCTTACCCCTAGAACTCCACGGAAACATGAACCACGAATCCAAGCGCAACAATCCCAATCCTCTAATGGTGAAGCCGGAATCTGAGGATCGCAGAGCCTCATCTGTGGCCGCCGCCGCCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGCGACATGCAGAAGGAGGCTGTTGACATTGCTATAGCCGCTTTTGAGAAGCATAGCGTCGAGAAGGATGTCGCCGAGCAGATAAAGAAGGAGTTCGATCAGAGACATGGCCCTACCTGGCATTGCATCGTCGGTCGTTCTTATGTGACACACGAGTCGAACCATTTTGTTTACTTCTACCTGGACCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGGTTGATCTCCCCTTGACAACGATGCCACCGAGTAGTTTGGCGAGCCTGCGACGATGGCGCTACAACTATTTCCTGTATGTATAATCTATTCTGCCAGTATATAAATCACTTGGTGTAGCATTTTATATATTATAACTGATATATCAGTGGGCAGTAAATTAAATGGTGAAACAAGAAATTCAATGTAAATGCATTTACATGATGTCTCAAAGGGGGTCTCTTTGGCGATGTCATTAAAACAGAATGCAGTTCAGAATCCGAGGCTCTAGATCCTACGTCGGGAAACAAAACATTCTTTATAAGGGTGTGAAAACTCTTCTCCAGCAGACGTGTTTTAAAACTGTG

Coding sequence (CDS)

ATGAACCACGAATCCAAGCGCAACAATCCCAATCCTCTAATGGTGAAGCCGGAATCTGAGGATCGCAGAGCCTCATCTGTGGCCGCCGCCGCCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGCGACATGCAGAAGGAGGCTGTTGACATTGCTATAGCCGCTTTTGAGAAGCATAGCGTCGAGAAGGATGTCGCCGAGCAGATAAAGAAGGAGTTCGATCAGAGACATGGCCCTACCTGGCATTGCATCGTCGGTCGTTCTTATGTGACACACGAGTCGAACCATTTTGTTTACTTCTACCTGGACCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGA

Protein sequence

MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVYFYLDQKAVLLFKSG

Homology

[Close]

BLAST of Carg19655 vs. NCBI nr
Match: KAG7018601.1 (hypothetical protein SDJN02_20471 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 9.0e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVYFYLDQKAVLLFKSG 115
           SVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGRSYVTHESNHFVYFYLDQKAVLLFKSG 114

[Close]

BLAST of Carg19655 vs. NCBI nr
Match: XP_022979977.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN ESKR+NPNPLMVKPESEDR+ASSVAAAAKKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of Carg19655 vs. NCBI nr
Match: KAG6582205.1 (hypothetical protein SDJN03_22207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 112/120 (93.33%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSV---AAAAKKIVIKSADMFGDMQKEAVDIAIAAF 60
           MN ESKRNNPNPLMVKPESEDRRASSV   AAAAKKIVIKSADMFGDMQKEAVDIAIAAF
Sbjct: 1   MNQESKRNNPNPLMVKPESEDRRASSVAAAAAAAKKIVIKSADMFGDMQKEAVDIAIAAF 60

Query: 61  EKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           EKHSVEKDVAEQIKK+FDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 61  EKHSVEKDVAEQIKKDFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 120

[Close]

BLAST of Carg19655 vs. NCBI nr
Match: XP_023526495.1 (dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 8.7e-51
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVA-AAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN ESKR NPNPLMVKPESEDR+ASSVA AAAKKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRRNPNPLMVKPESEDRKASSVATAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           HSVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of Carg19655 vs. NCBI nr
Match: XP_022955505.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-50
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN ESKR+NPNPLMVKPESEDR+ASSV AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           HSVEKDVAE IKKEFDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of Carg19655 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 27  VAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIV 86
           +A+ + K VIK+ADM  +MQ +AVD A  A EK+++EKD+A  IKKEFD++H PTWHCIV
Sbjct: 1   MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIV 60

Query: 87  GR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           GR   SYVTHE+ HF+YFYL Q A+LLFKSG
Sbjct: 61  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

[Close]

BLAST of Carg19655 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 55/86 (63.95%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR--- 91
           +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   
Sbjct: 4   RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SYVTHE+ HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Carg19655 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR--- 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SYVTHE+ HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Carg19655 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR--- 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SYVTHE+ HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Carg19655 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR--- 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFD+++ PTWHCIVGR   
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SYVTHE+ HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Carg19655 vs. ExPASy TrEMBL
Match: A0A6J1IQ69 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.5e-52
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN ESKR+NPNPLMVKPESEDR+ASSVAAAAKKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SVEKDVAEQIKKEFDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of Carg19655 vs. ExPASy TrEMBL
Match: A0A6J1GVA3 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 110/118 (93.22%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSV-AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN ESKR+NPNPLMVKPESEDR+ASSV AAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           HSVEKDVAE IKKEFDQRHGPTWHCIVGR   SYVTHESNHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of Carg19655 vs. ExPASy TrEMBL
Match: A0A6J1G0U9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.2e-49
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNH+SKR+NP+PLMVKPESEDR+ SS A   KKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SVEKDVAEQIKKEFD+RHGPTWHC++GR   SYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of Carg19655 vs. ExPASy TrEMBL
Match: A0A6J1IC60 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.2e-47
Identity = 100/117 (85.47%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNH+SKR+NP+ LMVKPESEDR+ SS A   KKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           SVEKDVAEQIKKEFD+RHGPTWHC++GR   SYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

[Close]

BLAST of Carg19655 vs. ExPASy TrEMBL
Match: A0A6J1C8U0 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MNHESKRNNPNPLMVKPESEDRRASSVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN ++KR NP  LMVKPESEDR+ SS    A+K+VIKSADMFGDMQKEAVDIAIAAFEK+
Sbjct: 1   MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKY 60

Query: 61  SVEKDVAEQIKKEFDQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           +VEKDVAEQIK+EFD+RHGPTWHCIVGR   SYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  AVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of Carg19655 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 20  EDRRAS-----SVAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEF 79
           +DRR+S     +   A K+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEF
Sbjct: 21  DDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEF 80

Query: 80  DQRHGPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKSG 115
           D++HG TWHCIVGR   SYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 81  DKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 123

[Close]

BLAST of Carg19655 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 24  ASSVAAAAKKIVIK--SADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRH 83
           A+ + AAA+ + ++  +ADM G MQ  A   A   + + EK S  K +A  +KKEFD+ +
Sbjct: 105 AARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGY 164

Query: 84  GPTWHCIVGR---SYVTHESNHFVYFYLDQKAVLLFKS 114
           GP WHCIVG    S+VTH +  F+YF +D+  VLLFK+
Sbjct: 165 GPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201

[Close]

BLAST of Carg19655 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDQRHGPTWHCIVGR---S 95
           ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG    S
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 96  YVTHESNHFVYFYLDQKAVLLFKS 114
           YVTH +  F+YF +D+  VLLFK+
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFKT 121

[Close]

BLAST of Carg19655 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDQRHGPTWHCIVGRS- 92
           K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG + 
Sbjct: 5   KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

Query: 93  --YVTHESNHFVYFYLDQKAVLLFK 113
             + TH    F+YF L+    L+FK
Sbjct: 65  GCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Carg19655 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-08
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDQRHGPTWHCIVGR-- 92
           K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W CIVG   
Sbjct: 5   KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

Query: 93  -SYVTHESNHFVYFYLDQKAVLLFK 113
            S+VTH S  F++F +    +LLFK
Sbjct: 65  GSFVTHCSGCFIHFSVGSLTILLFK 89

The following BLAST results are available for this feature:

BLAST of Carg19655 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018601.1	9.0e-56	100.00	hypothetical protein SDJN02_20471 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022979977.1	1.8e-51	94.02	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]	[more]
KAG6582205.1	3.0e-51	93.33	hypothetical protein SDJN03_22207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526495.1	8.7e-51	94.07	dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955505.1	2.5e-50	93.22	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]	[more]

BLAST of Carg19655 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39580	2.7e-26	62.64	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
Q22799	7.7e-26	63.95	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q3MHR3	7.7e-26	65.12	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	7.7e-26	65.12	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	7.7e-26	65.12	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of Carg19655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ69	8.5e-52	94.02	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1	[more]
A0A6J1GVA3	1.2e-50	93.22	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1	[more]
A0A6J1G0U9	5.2e-49	86.32	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1	[more]
A0A6J1IC60	8.2e-47	85.47	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1	[more]
A0A6J1C8U0	1.7e-44	81.20	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1	[more]

BLAST of Carg19655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15930.1	1.6e-34	71.84	Dynein light chain type 1 family protein	[more]
AT5G20110.1	3.8e-12	43.88	Dynein light chain type 1 family protein	[more]
AT1G23220.1	8.0e-10	39.29	Dynein light chain type 1 family protein	[more]
AT1G52240.2	1.1e-08	37.65	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G27360.1	5.7e-08	38.82	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..113 e-value: 1.1E-44 score: 164.5
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..113 e-value: 3.2E-31 score: 107.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 21..114
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 29..114 e-value: 7.5E-35 score: 121.0
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 31..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11886:SF95	DYNEIN LIGHT CHAIN	coord: 21..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19655-RA	Carg19655-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding