Carg19642 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19642
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 11926908 .. 11928635 (-)
RNA-Seq ExpressionCarg19642
SyntenyCarg19642
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGATGCATTAATGTGAGGGGATTTAAGTCCAAAGAAACTCTCTTCTCCTGAATGTTGTGAAAGTTTATATGGCATCTTTGAGGGTTTTTTTTTTTCTTTTTCTTTTTTTGAATTTCTACTTGACCATATAAAGGGTTTTGTACAGGGAGAATGATGTTGATAGTAACATTGCGGTTGATATGGGGATTGGCTTTAGGATAGTTGTTATTCTGGGAACGTCAATCCCCTATGGTATTAGTCTATTCTTCCATGTGTTGAGAAATGAGTGATGATCGGAATATCGGTGGTTGTGGACAGTGGAGAAACTGCTGTCAAGAACAACACCTCCATTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTAACTTTAAATTGTGGGTTAGATTTGTAACTTTCACTGGCTCCACTATAATGATGAAAAGTATATCTAGTATGTTAACTACAATCTTTGCTGCATTAACAGAGTATTCAACAGTTCATGTGGTAATGTAATTGCTGCTCTGCTTTAAATCTCTGTTTTGCAATACATCTAAATCTGCTTCATATGATTTGAACTACTGTTAGGCAGCATGTTTATACTGTATTGTCATATTAGTTCACTTTCTTTCCTAGCTGTGATTCCTTTATAGATATGTTGAACTTTGCCCCCCTTCAAAGTTTCAAAAGTAGTGATATCTAAACAAATAGACTTGCATCATTGTCATGGTGTCATGTTTAGGAGTTTGGAACTTAACAATGGCTCACCAGGTTTGAGATTGATATTTGAAGTTAGTGTAGGGTGGAGGTTTGGACTTCCATTTAGGTTGAATCTGGGCTGTACCAACCATGTGGATAATTCTGATTTGAATACTTGTCCATGTGAGCTGAATTGTACATTTGGTTGCATTTGATTGTGTGTGTTTAACAGGCTCTTAAAAATGTTATAAAGCATTTCATGTGCTTTTAGAGAACTTGCTTGTTTACCTTTCTTCCAGTATGTTTAACTGCTCTGCTTAAAATTTTCCTTTTCAAAATGGCATGTCAAATGCAATCTTAGTTTGAAAGAGCAACTTTACTTTTATCTTCTTTCGTGTTTGTGTTCGTAGGTTGATTTTCCTATATATCTCAAGTAATAAGGCCATCTTTTGGAACGGTCATACTCGAAAGAGAATTCAGTATTTTGTGACGAATTGTCAATCCACCTCCCTTCTCCAATCTTCAATCAAACTTGTGTTTCTCAAGCACCGTGAAACTACATTGTTCTACGTCCAAAAGATAACGATGTTAGTGGTTGGGCAAACCCTATCGTCTTGCATTTTTTTTCTTTTTCTTTTTTTTTTTATGGAAGGTTGAGATCAAGTTCTTTTTCAAACGTTTCATGGATTTCATGGATTTCGCAGATTTGAAGACCCTATCAATACTGGTGATAGGTCTTTAATTATCTTTTCTCCTATTTTTATCAATAAATTGTGAATTTCTTCTTTCTAAAAAGGAAAAAAACCTCATCCAAATATAATAAAAAGGATGCACTTGAATATTGAAATAGAATGAATGTAGGAAAACTTGGGTGCCCTTTATGAACAAACTATTTGATAACACTAACAGGGTGGAATTGATATTAGCTTTTATTCTATATTTCTCTCTCTTTATAAGTATACACAAATCTCTAGGCTACATTTATTCATGAATAGATTTCTTTTTTTTTTTATATTAAAAGTACCCTTACAAACATAGTTCAACTAGTTAA

mRNA sequence

ATGCATGATGCATTAATATTTGTAACTTTCACTGGCTCCACTATAATGATGAAAAGTATATCTAGTATGTTAACTACAATCTTTGCTGCATTAACAGAGTATTCAACAGTTCATGTGGTAATGTTGATTTTCCTATATATCTCAAGTAATAAGGCCATCTTTTGGAACGGTCATACTCGAAAGAGAATTCAGTATTTTGTGACGAATTGTCAATCCACCTCCCTTCTCCAATCTTCAATCAAACTTGTGTTTCTCAAGCACCGTGAAACTACATTGTTCTACGTCCAAAAGATAACGATGTTAGTGGTTGAGATCAAGTTCTTTTTCAAACGTTTCATGGATTTCATGGATTTCGCAGATTTGAAGACCCTATCAATACTGTACCCTTACAAACATAGTTCAACTAGTTAA

Coding sequence (CDS)

ATGCATGATGCATTAATATTTGTAACTTTCACTGGCTCCACTATAATGATGAAAAGTATATCTAGTATGTTAACTACAATCTTTGCTGCATTAACAGAGTATTCAACAGTTCATGTGGTAATGTTGATTTTCCTATATATCTCAAGTAATAAGGCCATCTTTTGGAACGGTCATACTCGAAAGAGAATTCAGTATTTTGTGACGAATTGTCAATCCACCTCCCTTCTCCAATCTTCAATCAAACTTGTGTTTCTCAAGCACCGTGAAACTACATTGTTCTACGTCCAAAAGATAACGATGTTAGTGGTTGAGATCAAGTTCTTTTTCAAACGTTTCATGGATTTCATGGATTTCGCAGATTTGAAGACCCTATCAATACTGTACCCTTACAAACATAGTTCAACTAGTTAA

Protein sequence

MHDALIFVTFTGSTIMMKSISSMLTTIFAALTEYSTVHVVMLIFLYISSNKAIFWNGHTRKRIQYFVTNCQSTSLLQSSIKLVFLKHRETTLFYVQKITMLVVEIKFFFKRFMDFMDFADLKTLSILYPYKHSSTS
Homology
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BLAST of Carg19642 vs. NCBI nr
Match: KAG7018588.1 (hypothetical protein SDJN02_20458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MHDALIFVTFTGSTIMMKSISSMLTTIFAALTEYSTVHVVMLIFLYISSNKAIFWNGHTR 60
           MHDALIFVTFTGSTIMMKSISSMLTTIFAALTEYSTVHVVMLIFLYISSNKAIFWNGHTR
Sbjct: 1   MHDALIFVTFTGSTIMMKSISSMLTTIFAALTEYSTVHVVMLIFLYISSNKAIFWNGHTR 60

Query: 61  KRIQYFVTNCQSTSLLQSSIKLVFLKHRETTLFYVQKITMLVVEIKFFFKRFMDFMDFAD 120
           KRIQYFVTNCQSTSLLQSSIKLVFLKHRETTLFYVQKITMLVVEIKFFFKRFMDFMDFAD
Sbjct: 61  KRIQYFVTNCQSTSLLQSSIKLVFLKHRETTLFYVQKITMLVVEIKFFFKRFMDFMDFAD 120

Query: 121 LKTLSILYPYKHSSTS 137
           LKTLSILYPYKHSSTS
Sbjct: 121 LKTLSILYPYKHSSTS 136

The following BLAST results are available for this feature:
BLAST of Carg19642 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018588.17.4e-65100.00hypothetical protein SDJN02_20458, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19642 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19642 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19642 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19642-RACarg19642-RAmRNA