Carg19590 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19590
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chromatin structure-remodeling complex protein BSH
Location	Carg_Chr14: 11570290 .. 11575493 (-)
RNA-Seq Expression	Carg19590
Synteny	Carg19590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAACGATCCAAACTCAGAGAAGCGCACTGCAATCCTTCTGAAAGCTACAGAATTGAACTCCCGAAGTAACCATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATGTGAGTTTTTTCTCGCTTTCATCTCCACTATTGTTCTTTTCATTGATTTCTCTTTCTCATGGTTTTATATTTCTTATGTTTTCGATCATTATCGAAGTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGGTAATTTTCATTGCTTACCTTGGTTGTGCCTGTTATGTTTCCTTTTAAATCAGTGATGATTCATGTGTAGGTTAGTTTCAGCTCTTGACTGCTCGAATTTAGGTTTTATTTTTTTCTCCCTAAATTTAGGATTTCTGAGTTGTAAAACTGAATTAATCACTGTTTTACCGATGATTTTGGCCGCCGTATTGCTGATACTTTAATGAAGGACTTGTAAACTTCGTTTGGTTTAAATATCTGACTTAATGTCTTCCATTGTGACTGTGTTTTGGTTTAGTATTTAGGCCCGAAATCAGTGTTTTGAAAGTTCATAGTATGGCGAACTAAAGCACAGTAGACATTGAGAACGTAAGTGTTCTTGCCACATCGACTAATTTAGAGAATGATCACGGATTTATAATCAAGAAATACAATCTCCATTGGTGTGAGGCCTAAGCCCAAAGCAAAGATAGTAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGCCCTAAACTTAGCTATGTCAATAGAATCCTCAAATGTCGACAAAGGCCTCCAAAAGAAAAGGAGTCGAGGCTCCTCGAAGGCATAATAAAAAATGACTAAGACTCCAAAAGAAAATAGAGTCGAGCCTCGATTAAGGGGAGACGTACTTTGTTCGAGGGGAGGTGTTGGATGAAAGTCTCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATACTATCTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAGAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGGACAATATCATACTACTGTGGAGAGTCGTGTTCATCTAACAAGTGTAAGGCATTTTGTGTTAAATAGGTCTATAGTGTTCATCTCAATTTTATGTGTCTAATGATGCTTTAAACTTTCAATTTTGTATACAATAGCTCTTTGAATTTTAAATAATGTCAAATATTTCAAGGACGTATTAGACACAAAATTAAAAAGTTCAAGGACTTGTTAAATATTAATTTGAAAGTTTAGAGACTTATTAGAGACTCAAGGACCTCTAATTAAAAAAAAGTTGAAAGTTCCTCTAATTAAAAAAAAAAAATTAAAAGTTCCTCTAATTAAAAAAGAGTTGAAAGTTCAAGTAATAAACTTGTAGTTTAACTTAAAACTTATACAAATGAAAAGTAGTATTATGGACAATAAGGCATTGAAAAAGTTGAGAAATTAGAGCCTTTGTAAGAGATGGGGGACAAAAATAATCATTTTCTTTAAAAATCTTTGTTAGTTTCTCCCATATGATGCTGTAATTTTGTCATTTGGAAAAGGAGGTTGAAAGAACTTTCTCATAGAGTTTAATCATTCTCAGGCTTTATGAGAGACTTTAAATTATATGAATGGCTTGTTATGCACTTTGTTAGCTTTGAGAGACAACATGAGTTTTTAACTTGGGAGCTTGAATCTAGTAACTCAGAGGCTATCTTAAAACGTTCCAAAACCACTGGCACCTACCATTGAGGGTTTACTTGAAAATGCCTTTTTTGCTCTTCTGATAATATCTTCAGTAACGTCATGATATTTGATGTTTACTCTAGATCCAGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCGTTATTTATAACACAAATTGCACAATCCATTCAAGTAAGGATAATAGTCATCCGCGTCTCTCTCTCCCATTCTTCAAGGATTTGAATGGTCAGCCTAAACCATGTCTCCTTTAGATATTAACAACAAAACCTTATAACTTAGATCATTACTTAAAATGAAATCTTGACTTGCCATCAAATTTATCATGTTTTCTCTTGGGTTTTGCTTATCAGTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGGTTTGTCTAGTTTGCGTTAACAATGCCAATCTCTTGACAACTATCTCCCTTTGTCATTATTCTACAGCTTGATGCCAAATAATGCAATTTTATTTCTTTCCCAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGTAAAGTTGAGCATACTCTTGATACATTTGACTGGAACAAATACTTATTCAGCTTACTTGTGCAAAATGATATATTTTTTAGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGAGTGAGTAAAGATCAATTGAATATGTAACTATAATGCACAAAGTTAGAACTGTATGTTCCATGTAAATTGGTTCCTTCGGTTGTGAAAAGGCAGCATCCCATGTTAAAGGGATGGATTATCAATGAGATATTTTTCGCCTAAATTGTCATCCTGTACATGTTTTTCTCCAACTATTTGATACTAAGAGAATTTCATTTATTTTTGTGAGGTAGCCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGGTTATTTTTTTCTTGCCTGTTAAAGCCTCCTCCTCAAAACTATTTCTTTTTTTCTAATTCTCTTCACATTCTGAGTGATTTATTTCATCACTGCATCTTCATGTGTCTATCTTCCAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGGTATCTATTTAGATATTCAAACTTGTGCATTTTTCCTCATTCTATCTAAATATTTACCATCATTCATTTGCCTATTGCGATGGTACGTTTCTCTGTTTGGCGCAACAGTAAAACTGGAGGTGCTTCGGTGGACCTCGTGAAGTTATTTGGTAATAAATCTCGATTCACTATTTTTTTTTTTTTTTTTCTTTGAAGTGATTAGTCTATTCCTTGATGCTTATGGATTTTCCTTCCATTTCCATTCTCTTATCTAACCTAAGAAGTATATGGTAAATAAATCGTACACGATTATCTAATACTGCTAGTTATGTTTGTTTTCTGGTATCGTGTGTCGTTGTCTTCAAGAGAGAGAAATCCAATGTTTTTCAACATTGACCTAGAAGTTTTGGGTGTTTTTGATTCCTGGGAATCATTAGGGGCTCATGTGAATGACAACTTATCTCAAGTTTAAATAGATTCCCACATGCGTGAGATATCCAGACATGCTGAGATGTCTTCATATTCGGGTATCTCATTTCCACAACACTTGGTGGGGTTATGGGTGTCTATATTTTGCGCATAAACAAAAAGATATTGTTTGTTCTTTGTGCCCTTTAACCATTTTTCTAAGCGTATAGCATACTTTTAAATTTTATTTTTTTTAGTTAGTAGTTTATGTTTATTATTAACGTTCTGTCTGTTACAGATAAATATGAACTTTTTTTTTTCAGAATCAGAGAGTTCATATCCCTATCTTAATGCCATTTACACTTCTTTATTCTCAAGTTTTAGCTTAAAAATTAGTTTAAAGTTCATGAATCACGTGACATGCACTTCATGCACTTAATTATTACCATGATGGAAGCATGTTTAATCCGAGCTTAGACCATTATTCTTTTCACCGTCTCAGTTTTTATACCATTTTCATTTGCCAGAGTTGGTGAGCTAAGTTTGGGAACGGATTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTATAAAAAACTAACTCCTATTATTAGTCTACTAATATTCTTTCCAGCTGATTTGTAAAAGTATTAAAATTTGATGCTTATGGTAGTAGTATAGGTTAGGAAACACAAACTTTCACATGATATGATATTGTTCACTTTGAACATAAACTCTCATGACTTTGCTTTTGGTTACCCATAAGGTCTCTTGCCAATGGAGATGTATTTCTTACTTATAAACTCATGATTAACCCTTTAATTAGCCTAATATGGGACTCATTTCTCAACGATCCTCAACACTATACACTAAAATGCAACAGGATAAGAAAGGATTGGGACAATTACCAACCAATTATTGATCTTTTGTCAAACGAGAAAGTTAATGCCCTTGAATCAGAAAGAGAGAGGACTGCTCGGCAATATATTCTCAGTTGTTGATCATATCACTTCTATGGTCTAAGGTAAACTATCTGACACGGATGAAGTTGTTAGGCAATTGTTCTTGCTGTTTTAACACATAATTAACATCCTTTAACTTTCCAAGTTACAGGATTTCGTAGCAATTCTTCATTGTAAGCCTATAAATCTAGCTGTTTAGTATGGTTATAAACTCTCTGAGCTCTGATAATGACATGGGTAGCACTTCTGACATGAATTTCATTCTTACTTTTTTTTGTTTTTGATAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAAAGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGAGCAGTTCTTCGATGGAATCATGGATGATAAGAGACTGATATGTCACCAACTAAAAGTTGGGGAATAATTTGCTCAATTTACTTCATGAAACCAATCATGTGCCCAAATTGAATTCGATTGGACGATATGGATAACATTGTGAAAAATGCAAATGGAAGGATAGAGCTCTGAAAAAGGCCTTCACGAGAAGCCCATCCAAATCCCTATCTTCCTTCCTCACATATCTATGAAAATGATAGAAAGAGATATTTTGTACGGACTGAAATAGACCTCAATAGTGGTGTGGCAGTTGAATTTTGTGGCTCAAAATTCGAGTTGGATGAGATATTTTTCTTAACTGAAACAAAAGTAACCATAGTTTAATTCAAAATTACACCAAATATCTTTATAATTCCAAAATA

mRNA sequence

GAGAACGATCCAAACTCAGAGAAGCGCACTGCAATCCTTCTGAAAGCTACAGAATTGAACTCCCGAAGTAACCATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAAAGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGAGCAGTTCTTCGATGGAATCATGGATGATAAGAGACTGATATGTCACCAACTAAAAGTTGGGGAATAATTTGCTCAATTTACTTCATGAAACCAATCATGTGCCCAAATTGAATTCGATTGGACGATATGGATAACATTGTGAAAAATGCAAATGGAAGGATAGAGCTCTGAAAAAGGCCTTCACGAGAAGCCCATCCAAATCCCTATCTTCCTTCCTCACATATCTATGAAAATGATAGAAAGAGATATTTTGTACGGACTGAAATAGACCTCAATAGTGGTGTGGCAGTTGAATTTTGTGGCTCAAAATTCGAGTTGGATGAGATATTTTTCTTAACTGAAACAAAAGTAACCATAGTTTAATTCAAAATTACACCAAATATCTTTATAATTCCAAAATA

Coding sequence (CDS)

ATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGA

Protein sequence

MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERFKASPLQLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYESDPEEFSMTFCKDLGIEDPEPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPASILRTIPKVTERPTHKG

Homology

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BLAST of Carg19590 vs. NCBI nr
Match: KAG7018538.1 (Chromatin structure-remodeling complex protein BSH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.1 bits (941), Expect = 8.9e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF 60
           MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF
Sbjct: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF 60

Query: 61  KASPLQLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYESDPEEFSMTF 120
           KASPLQLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYESDPEEFSMTF
Sbjct: 61  KASPLQLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYESDPEEFSMTF 120

Query: 121 CKDLGIEDPEPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPASILRTIPKVTERPTH 180
           CKDLGIEDPEPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPASILRTIPKVTERPTH
Sbjct: 121 CKDLGIEDPEPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPASILRTIPKVTERPTH 180

Query: 181 KG 183
           KG
Sbjct: 181 KG 182

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BLAST of Carg19590 vs. NCBI nr
Match: KAG6582138.1 (Chromatin structure-remodeling complex protein BSH, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.1 bits (780), Expect = 4.2e-79
Identity = 160/177 (90.40%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSS--DSEGALCKEDGE 60
           MEALASAHSKAPFKFRIPTAE LIPIRLDIEIDGQRFKDAFTWNSS  DSEGALCKEDGE
Sbjct: 1   MEALASAHSKAPFKFRIPTAENLIPIRLDIEIDGQRFKDAFTWNSSDPDSEGALCKEDGE 60

Query: 61  RFKASPLQL-------TEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYES 120
           RFKASP+         ++FQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYES
Sbjct: 61  RFKASPVIYNTNCTIHSKFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYES 120

Query: 121 DPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPAS 167
           DPEEFSMTFCKDLGIEDPE  PAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPAS
Sbjct: 121 DPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPAS 177

[Close]

BLAST of Carg19590 vs. NCBI nr
Match: XP_038898737.1 (chromatin structure-remodeling complex protein BSH [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 5.1e-61
Identity = 134/187 (71.66%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGAL---CKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +  +    K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVIFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMYSGE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYSGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS TFCKDLGIEDPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTFCKDLGIEDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. NCBI nr
Match: XP_022138105.1 (chromatin structure-remodeling complex protein BSH isoform X1 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 4.3e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. NCBI nr
Match: XP_022138106.1 (chromatin structure-remodeling complex protein BSH isoform X2 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 4.3e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

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BLAST of Carg19590 vs. ExPASy Swiss-Prot
Match: P93045 (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=3702 GN=BSH PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-51
Identity = 104/175 (59.43%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF 60
           M+ L S   K P KFR+PTAE L+PIRLDI+ +GQR+KDAFTWN SD +  +        
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KASPL--------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           K   L              QL++F+++EGQDMY+GE +I IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK 160
           NN+ESDPEEF+ T CKDLG+EDPE  PA+AF IREQLYEIA+Q+V S+RESR+SK
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSK 175

[Close]

BLAST of Carg19590 vs. ExPASy Swiss-Prot
Match: Q5U379 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio OX=7955 GN=smarcb1a PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 159 HDPAVIHENASQQEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDD----L 218

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             SPL            Q+  + +    D    + VI IKL++ V N  + DQ  WD++ 
Sbjct: 219 DLSPLTFVPAIASAIRQQIESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSE 278

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 279 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 307

[Close]

BLAST of Carg19590 vs. ExPASy Swiss-Prot
Match: Q6DFM1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis OX=8364 GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A        +E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 164 HDPAVIHENAAQSEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDD----L 223

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 224 DLNPLAFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 283

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 284 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 312

[Close]

BLAST of Carg19590 vs. ExPASy Swiss-Prot
Match: Q5BIN2 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus OX=9913 GN=SMARCB1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 171 HDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDD----L 230

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 231 DLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 290

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 291 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 319

[Close]

BLAST of Carg19590 vs. ExPASy Swiss-Prot
Match: Q5ZK40 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus OX=9031 GN=SMARCB1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 172 HDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDD----L 231

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 232 DLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 291

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 292 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 320

[Close]

BLAST of Carg19590 vs. ExPASy TrEMBL
Match: A0A6J1C8S0 (chromatin structure-remodeling complex protein BSH isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009356 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.1e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. ExPASy TrEMBL
Match: A0A6J1C8H9 (chromatin structure-remodeling complex protein BSH isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009356 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.1e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. ExPASy TrEMBL
Match: A0A6J1CA41 (chromatin structure-remodeling complex protein BSH isoform X3 OS=Momordica charantia OX=3673 GN=LOC111009356 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.1e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. ExPASy TrEMBL
Match: A0A0A0L868 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.1e-60
Identity = 131/187 (70.05%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. ExPASy TrEMBL
Match: A0A5A7UEL5 (Chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00140 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.0e-59
Identity = 130/187 (69.52%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNT+IKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. TAIR 10
Match: AT3G17590.1 (transcription regulatory protein SNF5, putative (BSH) )

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-52
Identity = 104/175 (59.43%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF 60
           M+ L S   K P KFR+PTAE L+PIRLDI+ +GQR+KDAFTWN SD +  +        
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KASPL--------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           K   L              QL++F+++EGQDMY+GE +I IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK 160
           NN+ESDPEEF+ T CKDLG+EDPE  PA+AF IREQLYEIA+Q+V S+RESR+SK
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSK 175

[Close]

BLAST of Carg19590 vs. TAIR 10
Match: AT3G17590.2 (transcription regulatory protein SNF5, putative (BSH) )

HSP 1 Score: 199.1 bits (505), Expect = 3.0e-51
Identity = 105/177 (59.32%), Postives = 128/177 (72.32%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRI--PTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGE 60
           M+ L S   K P KFRI  PTAE L+PIRLDI+ +GQR+KDAFTWN SD +  +      
Sbjct: 1   MKGLVSTGWKGPVKFRIYRPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKR 60

Query: 61  RFKASPL--------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLW 120
             K   L              QL++F+++EGQDMY+GE +I IKLDLRVN+TLIKDQ LW
Sbjct: 61  TVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLW 120

Query: 121 DLNNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK 160
           DLNN+ESDPEEF+ T CKDLG+EDPE  PA+AF IREQLYEIA+Q+V S+RESR+SK
Sbjct: 121 DLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSK 177

The following BLAST results are available for this feature:

BLAST of Carg19590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018538.1	8.9e-98	100.00	Chromatin structure-remodeling complex protein BSH [Cucurbita argyrosperma subsp...	[more]
KAG6582138.1	4.2e-79	90.40	Chromatin structure-remodeling complex protein BSH, partial [Cucurbita argyrospe...	[more]
XP_038898737.1	5.1e-61	71.66	chromatin structure-remodeling complex protein BSH [Benincasa hispida]	[more]
XP_022138105.1	4.3e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X1 [Momordica charant...	[more]
XP_022138106.1	4.3e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X2 [Momordica charant...	[more]

BLAST of Carg19590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93045	2.9e-51	59.43	Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=37...	[more]
Q5U379	2.0e-12	33.12	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q6DFM1	2.7e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q5BIN2	3.5e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q5ZK40	3.5e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Carg19590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8S0	2.1e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X2 OS=Momordica chara...	[more]
A0A6J1C8H9	2.1e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X1 OS=Momordica chara...	[more]
A0A6J1CA41	2.1e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X3 OS=Momordica chara...	[more]
A0A0A0L868	6.1e-60	70.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=3 SV=1	[more]
A0A5A7UEL5	1.0e-59	69.52	Chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo va...	[more]

BLAST of Carg19590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17590.1	2.1e-52	59.43	transcription regulatory protein SNF5, putative (BSH)	[more]
AT3G17590.2	3.0e-51	59.32	transcription regulatory protein SNF5, putative (BSH)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006939	SNF5/SMARCB1/INI1	PFAM	PF04855	SNF5	coord: 80..143 e-value: 9.5E-11 score: 41.9 coord: 20..48 e-value: 3.4E-7 score: 30.3
None	No IPR available	PANTHER	PTHR10019	SNF5	coord: 9..47
None	No IPR available	PANTHER	PTHR10019	SNF5	coord: 66..170
None	No IPR available	PANTHER	PTHR10019:SF5	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1	coord: 9..47 coord: 66..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19590-RA	Carg19590-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0000228	nuclear chromosome
molecular_function	GO:0003712	transcription coregulator activity