
Carg19581 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGAAATAATAACATTTATAATATATATATATCGACACTGTTGTTGTACGTTGGATTCAATCCAGTGTCGTTTTGAGTTGGTGTTCTGTTTTTAGGCAAAAATCTGAAGATCTACTTGTTCCATGATCCATTTGTAAGGCCCCCAACATTCTCGGAACCAGAAAAACAGCAAGAAATTTCTGAGCATTCAAAATTCTCCTCTCTCTCTCTCTCGTAGATCTCCCATGGCGGACGAATCTTACTGTAAACACAATTTGAAGATGGCAATGTTAAACCATGAACACACATTTCGTCACCAAGTACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCCACTTCCCTTTGTCTCTTCTTTCTTTTTGTTTAACAGCGGCCAGAGGCTTTTTTTGTTGCAGGTTTATGAGCTCCACCGATTGTACAGAATTCAGAAGGTTTTGATGAAGAACATAGCTGAAAACAGGGGAAAAACAGAGGAGGAAGAAGAAGAAGAAGAAGGTGAAGAGATTGAGTTTATTCAGGAAAGTGAGATTGAATTGACATTGGGGCCTTCCAGTTATAGTAATCAAGTTGGAGGGAGGAGAAGGAGGAGGAAGAAATTGGGTGAATTAATGAAAGGAGGTTCCGATTCTTCCTCTTCCTCGACCACTGGATCTGCGCCTAAAGGTGGAATTCTTTATCGAGATGGCGAGTTTCTGGGATTTCTCGAGCTTCAAGATGAAACCAGGCTTGCTCAACACCATCCAAATCCATGGCTTTGTCAAGTTGTAAGCCTTAATCTCACTTGA AGAAATAATAACATTTATAATATATATATATCGACACTGTTGTTGTACGTTGGATTCAATCCAGTGTCGTTTTGAGTTGGTGTTCTGTTTTTAGGCAAAAATCTGAAGATCTACTTGTTCCATGATCCATTTGTAAGGCCCCCAACATTCTCGGAACCAGAAAAACAGCAAGAAATTTCTGAGCATTCAAAATTCTCCTCTCTCTCTCTCTCGTAGATCTCCCATGGCGGACGAATCTTACTGTAAACACAATTTGAAGATGGCAATGTTAAACCATGAACACACATTTCGTCACCAAGTTTATGAGCTCCACCGATTGTACAGAATTCAGAAGGTTTTGATGAAGAACATAGCTGAAAACAGGGGAAAAACAGAGGAGGAAGAAGAAGAAGAAGAAGGTGAAGAGATTGAGTTTATTCAGGAAAGTGAGATTGAATTGACATTGGGGCCTTCCAGTTATAGTAATCAAGTTGGAGGGAGGAGAAGGAGGAGGAAGAAATTGGGTGAATTAATGAAAGGAGGTTCCGATTCTTCCTCTTCCTCGACCACTGGATCTGCGCCTAAAGGTGGAATTCTTTATCGAGATGGCGAGTTTCTGGGATTTCTCGAGCTTCAAGATGAAACCAGGCTTGCTCAACACCATCCAAATCCATGGCTTTGTCAAGTTGTAAGCCTTAATCTCACTTGA ATGGCGGACGAATCTTACTGTAAACACAATTTGAAGATGGCAATGTTAAACCATGAACACACATTTCGTCACCAAGTTTATGAGCTCCACCGATTGTACAGAATTCAGAAGGTTTTGATGAAGAACATAGCTGAAAACAGGGGAAAAACAGAGGAGGAAGAAGAAGAAGAAGAAGGTGAAGAGATTGAGTTTATTCAGGAAAGTGAGATTGAATTGACATTGGGGCCTTCCAGTTATAGTAATCAAGTTGGAGGGAGGAGAAGGAGGAGGAAGAAATTGGGTGAATTAATGAAAGGAGGTTCCGATTCTTCCTCTTCCTCGACCACTGGATCTGCGCCTAAAGGTGGAATTCTTTATCGAGATGGCGAGTTTCTGGGATTTCTCGAGCTTCAAGATGAAACCAGGCTTGCTCAACACCATCCAAATCCATGGCTTTGTCAAGTTGTAAGCCTTAATCTCACTTGA MADESYCKHNLKMAMLNHEHTFRHQVYELHRLYRIQKVLMKNIAENRGKTEEEEEEEEGEEIEFIQESEIELTLGPSSYSNQVGGRRRRRKKLGELMKGGSDSSSSSTTGSAPKGGILYRDGEFLGFLELQDETRLAQHHPNPWLCQVVSLNLT Homology
BLAST of Carg19581 vs. NCBI nr
Match: KAG7033654.1 (hypothetical protein SDJN02_03378 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 303.9 bits (777), Expect = 7.8e-79 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
BLAST of Carg19581 vs. NCBI nr
Match: KAG6571250.1 (hypothetical protein SDJN03_30165, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77 Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0
BLAST of Carg19581 vs. NCBI nr
Match: XP_022932916.1 (uncharacterized protein LOC111439473 [Cucurbita moschata] >XP_023513141.1 uncharacterized protein LOC111777668 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 298.1 bits (762), Expect = 4.3e-77 Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0
BLAST of Carg19581 vs. NCBI nr
Match: XP_022985827.1 (uncharacterized protein LOC111483758 [Cucurbita maxima]) HSP 1 Score: 287.3 bits (734), Expect = 7.6e-74 Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Carg19581 vs. NCBI nr
Match: XP_038902582.1 (uncharacterized protein LOC120089237 [Benincasa hispida]) HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51 Identity = 124/174 (71.26%), Postives = 137/174 (78.74%), Query Frame = 0
BLAST of Carg19581 vs. ExPASy TrEMBL
Match: A0A6J1EXP9 (uncharacterized protein LOC111439473 OS=Cucurbita moschata OX=3662 GN=LOC111439473 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77 Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0
BLAST of Carg19581 vs. ExPASy TrEMBL
Match: A0A6J1J5Z3 (uncharacterized protein LOC111483758 OS=Cucurbita maxima OX=3661 GN=LOC111483758 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74 Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of Carg19581 vs. ExPASy TrEMBL
Match: A0A1S3C5U9 (uncharacterized protein LOC103497380 OS=Cucumis melo OX=3656 GN=LOC103497380 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 2.7e-45 Identity = 114/174 (65.52%), Postives = 129/174 (74.14%), Query Frame = 0
BLAST of Carg19581 vs. ExPASy TrEMBL
Match: A0A0A0LJL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G277640 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.4e-44 Identity = 113/174 (64.94%), Postives = 128/174 (73.56%), Query Frame = 0
BLAST of Carg19581 vs. ExPASy TrEMBL
Match: A0A6J1G6V7 (uncharacterized protein LOC111451410 OS=Cucurbita moschata OX=3662 GN=LOC111451410 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 3.4e-43 Identity = 105/163 (64.42%), Postives = 121/163 (74.23%), Query Frame = 0
BLAST of Carg19581 vs. TAIR 10
Match: AT5G67390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15 Identity = 64/176 (36.36%), Postives = 86/176 (48.86%), Query Frame = 0
BLAST of Carg19581 vs. TAIR 10
Match: AT5G67390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15 Identity = 64/176 (36.36%), Postives = 86/176 (48.86%), Query Frame = 0
BLAST of Carg19581 vs. TAIR 10
Match: AT1G69360.1 (Plant protein of unknown function (DUF863) ) HSP 1 Score: 47.8 bits (112), Expect = 9.4e-06 Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|