Carg19574 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19574
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 3326894 .. 3328710 (+)
RNA-Seq ExpressionCarg19574
SyntenyCarg19574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTCTCTCTCTGTCTCTCTCTGTCTCTTCGTCTCTCAGTGTGCGCGCTTTTGATTCCAGGTATATTCTTTGGTGCGCTTCCGTTTCTGTTTCGTCTCTTAGATATATTTCATTTCAGTTCTTCATGTTCTTACGATTTTGAAGGCTGTTCTTGTATGCTCAAATCTTTTCCAAGGTTTTCCACTGCATTTCTATCGAACTAGGCCGAGGTGATTTCATTTAATGATCTTTTTTTTTGTTGTTTTCATCTTCCCATTTGAATTGTCGCAGCTTATAATTGGATCGTGTAATTAGAGTTTCATGTGTTTTTTTGTGGAAAATTTTGTGTGTGGAAAGGGAATGGGGATTTGGTCTGTTTTTAGGATCTCGAGCTGTTTTTGAGAAACTTTTTTTGGTGCTTGGCGTGATTGTTTGATAAAGTGGTGATGATTGCTTTGAGCTTATAAGTCTCTACTTGTTGTGTGTTCTTGAGGTAGCTGACATTTCCTTTTCTGGGGTTGATTCGTTTTGAGGGGAAATTCTATTTTTACCCGACCTAGTTTCCATTTTAAGGGGTTGTGATCTGTATCTGATTGTTTGACAACTGTTATTGATGTCTTATTGGCTTGCATCTTCTGTGATCTCGGAGGATTTACGTAGGAATGCTTGCAAATTAGCGTCTGTTTTGACGCTTGGGAATCCACCGGAGAACTCTAAATGGGACTCTCTTGTCTTCCTTTCTTCTTCAGCACTTAATGTAATTTACAGAGTCTTCTAATTTTTTTTATAAATTTTTTATAGAAAAGATATAATTTAGATCCTGTTTTGAAGAATAAACAAGATTATGAATGTCAGTAGAATTTTTGTACGACTTTGAGTAATTATGCTTTATTGATAATTTCTGATGCTTAGTTTAGCGACAGAAACCGTCCTCTGCTTGCTTTCTGAGTTCATGATTTTTCTCTGCATTTGCATACTATCTATTGTCTTTTGGTGCATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGGAAATAGAAAAGGAAACGCCTCTTGAGACGCTTTCTTCATTTATAGTCTTCTTTTTCGAAGTTTATTGATAATTCAGGAAGTATCATACTGTGTAATATGTACTACAGTCTGTAGATAGGCATGAACTGCCTTTATGAGGCTAATGACATGATTGACGTACACATATTATAACTGTGTGTGTTTCTTGTCATGGTTGATAATTGCGATTCAGAGTATGTTTACTTAACTTTCTTACTTAAGCTGAAAACTGTTGTGCTGCGCCTCTTTTTTTCTCTTGGCAGCTCATTCTATTTTTCTGTCTAAACTAACCTTGGTCATTCAGTTCGTCTACAAGTGCTTACTTTTTTTTTACTTTAAATTTAGTTTTAGAAAGCTAACTTTTCTGATGGACCATCTTGAATTGCAGGGCTCTTTTTCACTTGTTTGCACGTGAAAATTTTCTTGTCGTCCCAAATGATTGGTTTTGTGAGTGGCTGCTACATTGTGTTGTCTCAGTAATTATGGAGGTGATAATGGAAAGATGTTTTTTAATCCAATAAAGGAATGTGCTATTACCTTATAGGTTGATTTTTGTCTAGGATATTTATTACGACATAGTCTGAGATGAAGGGGCGTTGTTTCAAGTAGCGGATGAGTTGGTTGACTTGGACGTTCTTCTTACCAGACATCTGTTGATTGACGTCTTAATATTGTTCACTGCTGATAACTTATTCTTAAGAAGCAGTTTCATAGTTGTTTCAAGAGTTGAGGAGAATTTATACATTGTTCTTCTAAAATTTTATATTAGGAAGTAAAATAA

mRNA sequence

ATGGAAACTCTCTCTCTGTCTCTCTCTGTCTCTTCGTCTCTCAGTGTGCGCGCTTTTGATTCCAGGAATGCTTGCAAATTAGCGTCTGTTTTGACGCTTGGGAATCCACCGGAGAACTCTAAATGGGACTCTCTTGTCTTCCTTTCTTCTTCAGCACTTAATGAAATAGAAAAGGAAACGCCTCTTGAGACGCTTTCTTCATTTATAGTCTTCTTTTTCGAAGAAGTAAAATAA

Coding sequence (CDS)

ATGGAAACTCTCTCTCTGTCTCTCTCTGTCTCTTCGTCTCTCAGTGTGCGCGCTTTTGATTCCAGGAATGCTTGCAAATTAGCGTCTGTTTTGACGCTTGGGAATCCACCGGAGAACTCTAAATGGGACTCTCTTGTCTTCCTTTCTTCTTCAGCACTTAATGAAATAGAAAAGGAAACGCCTCTTGAGACGCTTTCTTCATTTATAGTCTTCTTTTTCGAAGAAGTAAAATAA

Protein sequence

METLSLSLSVSSSLSVRAFDSRNACKLASVLTLGNPPENSKWDSLVFLSSSALNEIEKETPLETLSSFIVFFFEEVK
Homology
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BLAST of Carg19574 vs. NCBI nr
Match: KAG7033661.1 (hypothetical protein SDJN02_03385, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 8.8e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  METLSLSLSVSSSLSVRAFDSRNACKLASVLTLGNPPENSKWDSLVFLSSSALNEIEKET 60
          METLSLSLSVSSSLSVRAFDSRNACKLASVLTLGNPPENSKWDSLVFLSSSALNEIEKET
Sbjct: 1  METLSLSLSVSSSLSVRAFDSRNACKLASVLTLGNPPENSKWDSLVFLSSSALNEIEKET 60

Query: 61 PLETLSSFIVFFFEEVK 78
          PLETLSSFIVFFFEEVK
Sbjct: 61 PLETLSSFIVFFFEEVK 77

The following BLAST results are available for this feature:
BLAST of Carg19574 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033661.18.8e-31100.00hypothetical protein SDJN02_03385, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19574 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19574 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19574 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19574-RACarg19574-RAmRNA