Carg19571 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19571
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein 18
Location	Carg_Chr03: 3344380 .. 3346437 (-)
RNA-Seq Expression	Carg19571
Synteny	Carg19571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGTAAAATTCAATCAAAATCCGTTCAGAACTCTCATCGGATCTGGTGTGTGAATTTAAATATTATTTTTATGTTTTTTTTTTTTTTTTTTGTTTAATTTTGCAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACGTATGATTATTGCTTTTATTTGCTCATTATTCATTTATATTTTTCTGAAATGTATTAGCATTGTTCATGGATGTGCAATATTGAGATGTTTGATTGCTGTTCATATTGCATCCACTGTACTGGTAAAATAGTGAGTTCTAGTCTAGGAATCTAGGTTTGAAAACTTCACTACGCTCAGAGATGAATTCTGAGGTTCAAATATCCTTTTGCAAATGATTTGCTGCATCAAGGCTGCAATCATAGATAATTTACATTTGCAGATTGGAATTAAAGTCGGTGATCGATGTTTATGATTTCCAACCATAAAGCTTTTTTGATGCTTGTATACATGACTGTGGATACAATCCATATTCACATTTTGCATGTTGATGTGTACGTATTCATGTATTTCTTAATTGCTGGTCCTTTCATTATAGGAGAATACCCTTTTTGAATTTGTAACGGCTCAAGCCCACTACTGGCAGATATTATCCTCTTTGGATTTTTCCTTTCGAGATTTCTCTCAAGGGTTTTAAAATGCGTGTGCTAGGAAGAGGTTTCCACATCCTTATAAAAATGCTTCATTCTCCTCCCAACCAAAGTGGGATCTCACAATCCACCCCTCTTCGGGGCCCAATGTCCTCGCTACCACTCGTTCCCTCCTCCAATCGATGTGGGACCCCCTAATCCACCCCCCTTCAGGGCCCAACGTCCTTGGGTGGCACATCGCCTCGTGTCCACCCCCCTTCGGGGTTCAGCTTCCTCGCTGGCACATCGTTTGGTGTACACCCCCTTTGGGGCTCAACGTCCTTGCCGGCACACCGCCCGATGTTTGGCTCTGATGCCATTTGTAACGGCCCAAACCCATTGCAAGCAGAGATTGTCCTCTTTGGCAAAAAATTGGCATTCCAACCACCAAAAATATTCCCTTTTCTTTTTATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGGAAACCTCCCCTAGCAGACACGTTTTAAAAAACGTTGAGAGGAAGCCCGAAAGGGAAATCCCCCTTTCATGTTTGTTGTACATTTTCCTTTGTTCACAATCATATTTTGCGAAGTCTATATGCACATTTTTTTTCATGGATTTCTCGGTGGGTTTAGGCTATTACTGCATTCTACAAAAACCCTTTCATGTTTGTTGTACATTTTCCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCAACTCCAATTGTTCTCATTTCAAGTACAAGAAAGCCTTATTTGGAGTACTTACATACTTGTATTTGTAATGCAGTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCGTAATTTCAATGATAATTCTGGCAAGTACTCGTTATTACTTCTTTTCCTCATGTCCCGGATGAACAACCCCATACTATCCAATTGCCCCAGGATTATTTCTCTCTCATTTGTTTGTTGTCTAGTTTTCCACGTCAAGAACACTTAACTGAACTCTCATTTCTGTATGGCAGATAAACACACTTTTCACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

mRNA sequence

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCATAAACACACTTTTCACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

Coding sequence (CDS)

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCATAAACACACTTTTCACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAA

Protein sequence

MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKED

Homology

[Close]

BLAST of Carg19571 vs. NCBI nr
Match: KAG7033663.1 (Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKED 156

[Close]

BLAST of Carg19571 vs. NCBI nr
Match: XP_022949841.1 (transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane protein 18 [Cucurbita maxima] >KAG6603481.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 156/163 (95.71%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of Carg19571 vs. NCBI nr
Match: XP_023543279.1 (transmembrane protein 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWL+GLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLIGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRNRARLSQ+KED
Sbjct: 121 SGPLLLISMIILINTLFTLCYLVVRWKRAELRNRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. NCBI nr
Match: XP_038900756.1 (transmembrane protein 18 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 9.7e-77
Identity = 147/163 (90.18%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADL+QK+SSELRSG+RPAVDNF+GFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLIQKISSELRSGIRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLC+LVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCFLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. NCBI nr
Match: XP_011650049.1 (transmembrane protein 18 [Cucumis sativus] >KGN63345.1 hypothetical protein Csa_021882 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 145/163 (88.96%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAE IN ILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. ExPASy Swiss-Prot
Match: Q5F410 (Transmembrane protein 18 OS=Gallus gallus OX=9031 GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GL GFH L  ++T F+ +H   Q+  FL  +  VY AE IN + + NW+ F+
Sbjct: 26  DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query: 105 TQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRW 140
              YFD  G+F+S ++S PLL+NT+     +VV W
Sbjct: 86  KYQYFDSRGMFISLVFSAPLLVNTII----IVVNW 116

[Close]

BLAST of Carg19571 vs. ExPASy Swiss-Prot
Match: Q641M3 (Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-17
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 40  FFHAIDWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKN 99
           F  ++DW EPWLM LL FH      T+ + K+   Q+  FLL +A VY AE +N + + N
Sbjct: 28  FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMN 87

Query: 100 WKNFATQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRWKRAELRNRARLSQTK 155
           W++F+   YFD  G+F+S ++S PLL+NT+  +   V  W+        ++ Q K
Sbjct: 88  WRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWV--WRTFSTMTELKILQLK 140

[Close]

BLAST of Carg19571 vs. ExPASy Swiss-Prot
Match: Q3SZ36 (Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-17
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GL GFH L L++T F+ +    Q+  FL  +  VY AE IN + + NW+ F+
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRWKRAEL 145
              YFD  G+F+S ++S PLL+N L     +VV W R  L
Sbjct: 82  KHQYFDSRGMFISLVFSAPLLLNAL----VIVVLWVRKTL 117

[Close]

BLAST of Carg19571 vs. ExPASy Swiss-Prot
Match: Q6DGF8 (Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GLL FH L L++T F+ +    Q+  FL  +  VY AE IN + + NW+ FA
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKE 156
              YFD  G+F+S ++S PLL N +     +V+ W R  L   + L   +E
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAM----VIVIMWVRKTLTVMSDLKNLQE 128

[Close]

BLAST of Carg19571 vs. ExPASy Swiss-Prot
Match: Q3TUD9 (Transmembrane protein 18 OS=Mus musculus OX=10090 GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-16
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 45  DWKEPWLMGLLGFHGLLLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFA 104
           DW EPWL+GLL FH L L++T F+ +    Q+  FL  +  VY AE IN + + NW+ F+
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

Query: 105 TQNYFDPNGVFLSTLWSGPLLINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
              YFD  G+F+S ++S PLL N +     +V+ W R  L     L   +E+
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAML----IVIMWVRKTLTVMTDLKTLQEE 129

[Close]

BLAST of Carg19571 vs. ExPASy TrEMBL
Match: A0A6J1ISM9 (Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.1e-81
Identity = 156/163 (95.71%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of Carg19571 vs. ExPASy TrEMBL
Match: A0A6J1GD63 (Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.1e-81
Identity = 156/163 (95.71%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELRNRARLSQTKED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRNRARLSQTKED 163

[Close]

BLAST of Carg19571 vs. ExPASy TrEMBL
Match: A0A0A0LN62 (Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.5e-75
Identity = 145/163 (88.96%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFLLALAGVYFAE IN ILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. ExPASy TrEMBL
Match: A0A5A7VF36 (Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001270 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLLGFHGL
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITIFTRK TNFQMFLFL ALAGVYFAE IN+ILSKNWK FATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
            GPL       LINTLFTLCYLVVRWKRAELR+RARLSQ+KED
Sbjct: 121 CGPLLVISMIILINTLFTLCYLVVRWKRAELRHRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. ExPASy TrEMBL
Match: A0A6J1DPY2 (Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 145/163 (88.96%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLLGFH L
Sbjct: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFIGFFHAIGWKEPWLMGLLGFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LLIITI TRK TNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIVTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTL TLC+LVVRWKRAEL++RARLSQ+KED
Sbjct: 121 SGPLLVISMIILINTLLTLCFLVVRWKRAELQHRARLSQSKED 163

[Close]

BLAST of Carg19571 vs. TAIR 10
Match: AT1G34350.1 (unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). )

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-66
Identity = 117/163 (71.78%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH L
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120
           LL++T+ +R+H NF MFLFLLALAGVYFAE +NR L KNWK+F+TQNYFD NGVFLSTLW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

Query: 121 SGPL-------LINTLFTLCYLVVRWKRAELRNRARLSQTKED 157
           SGPL       LINTLF+LCYL+V+WKRAELR+RARL+ TKE+
Sbjct: 121 SGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRARLAHTKEE 163

[Close]

BLAST of Carg19571 vs. TAIR 10
Match: AT1G34350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-61
Identity = 116/188 (61.70%), Postives = 141/188 (75.00%), Query Frame = 0


Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH L
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLIITIFTRKHTNFQMFLFLLA-------------------------LAGVYFAERINRI 120
           LL++T+ +R+H NF MFLFLLA                         +AGVYFAE +NR 
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLACKFPLKLSIYILYKKSLRSNDLTSLVAGVYFAENLNRE 120

Query: 121 LSKNWKNFATQNYFDPNGVFLSTLWSGPL-------LINTLFTLCYLVVRWKRAELRNRA 157
           L KNWK+F+TQNYFD NGVFLSTLWSGPL       LINTLF+LCYL+V+WKRAELR+RA
Sbjct: 121 LRKNWKSFSTQNYFDSNGVFLSTLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRA 180

The following BLAST results are available for this feature:

BLAST of Carg19571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033663.1	1.5e-82	100.00	Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949841.1	1.9e-80	95.71	transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane prot...	[more]
XP_023543279.1	1.6e-79	94.48	transmembrane protein 18 [Cucurbita pepo subsp. pepo]	[more]
XP_038900756.1	9.7e-77	90.18	transmembrane protein 18 [Benincasa hispida]	[more]
XP_011650049.1	1.5e-74	88.96	transmembrane protein 18 [Cucumis sativus] >KGN63345.1 hypothetical protein Csa_...	[more]

BLAST of Carg19571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F410	5.3e-17	44.21	Transmembrane protein 18 OS=Gallus gallus OX=9031 GN=TMEM18 PE=2 SV=1	[more]
Q641M3	6.9e-17	37.39	Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1	[more]
Q3SZ36	9.0e-17	44.00	Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1	[more]
Q6DGF8	1.2e-16	40.54	Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1	[more]
Q3TUD9	2.6e-16	39.29	Transmembrane protein 18 OS=Mus musculus OX=10090 GN=Tmem18 PE=2 SV=1	[more]

BLAST of Carg19571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ISM9	9.1e-81	95.71	Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1	[more]
A0A6J1GD63	9.1e-81	95.71	Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1	[more]
A0A0A0LN62	7.5e-75	88.96	Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1	[more]
A0A5A7VF36	3.7e-74	87.73	Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1DPY2	3.7e-74	88.96	Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=...	[more]

BLAST of Carg19571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34350.1	4.8e-66	71.78	unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; B...	[more]
AT1G34350.2	1.6e-61	61.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	COILS	Coil	Coil	coord: 150..156
None	No IPR available	PANTHER	PTHR22593	TRANSMEMBRANE PROTEIN 18	coord: 1..153
None	No IPR available	PANTHER	PTHR22593:SF2	TRANSMEMBRANE PROTEIN 18	coord: 1..153
IPR026721	Transmembrane protein 18	PFAM	PF14770	TMEM18	coord: 39..148 e-value: 2.7E-39 score: 133.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19571-RA	Carg19571-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0052543	callose deposition in cell wall
biological_process	GO:0009846	pollen germination
biological_process	GO:0009860	pollen tube growth
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005640	nuclear outer membrane