Carg19562 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19562
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PHD finger protein ING
Location	Carg_Chr03: 3430575 .. 3433041 (-)
RNA-Seq Expression	Carg19562
Synteny	Carg19562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTGGAGATGGTGAAATTATTTTACGTTGAATCATTGATATTTTCAAAGTGTTGTACTGAAACATTTGTCCATCACGTAGCTACATGCCATTGATATTTTAGAATATATTTTCTTGACTTATCTTACAGGGTTTCTTGTGTTTTTACTTTTCCAGATAGATAGCCATATTAAACGACTTGATGAGGATCTAAACAACTTTGCAGAAGATCTGAAACAAGGTACACAGACTTAGAAGCTTGGATATCTCTGAGAAATGCAAGCCATTTTACAATGTTACGTTTGAAGGTTGATTTCTTTATTATCTGAAGAGTTGAAGGTGAGCAAATTATTGGTACTCCTCAGAGTCATTTGTGATAATTTATCAAACAAATAAATATTACATTGTTGGATGCTTTTATGAATTGCTTACCTTTTCGGCTTCTCCTTCCATTCAGTTTGTCTGTTTAGATAATGCTTGACCTCCTACTATTTTTCAGAGGGAAAAATTTCACCAGATGAACCAGCAATTCTTCCACCATTGCCACTAGTTTCGAAAAATGAAAAGCGCAAATCAATATATATGGTACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGAGATTTTGAGCTCATGCCTCCTCCAGGAAGCCATAAAAAGGACTTTGCACCTTCACTTGATGTAGATCAGCCCATTGATCCAAATGAACCTACGTATTGCATTTGTCATCAGGTTCTGATTTTGGATTCATGCATGCCTCTTTTTGAAAATTGAACTTATTTTATCAAACGATCCATTCATTTTTGGCGTTGTTTCCATACACTAAACTTATTATGTTAGGGACTGGAAGACTGTGGTTAGTTCGTGGGTATACGAGTTAGAGTTAGTTAAAAAAATCTGGTAATGCATGAGAGAATGGTAGCCCTCGTGCAAAGCTTTCATCCTAAAGTTCCTATCTACATAATTACTGGGGGAAACTGTCGAAAAATGGACTAAATTGAAAGTTTCAATCTCATGCAACCACTCCGCAAGAGATGCAGTTTTATGCAAAAAAGTAGATTTTGCTATGTAAAAGGAAAAGGTTTATTTCTGGTTTTATATATTTAATAGCATTGTGACCTTATTGGATGAAGAAATATAGCTGTTTTTGAGAATTTCTGTGTAAAGTTGAGTGAGAAAGCAGCAGGGGATATAGATTGGAAGTTGGAGGCCAAGTCTTGAGCTCAAGAATGAAATTGTAGAGAGAGATGGTTTTAGCTATAATGTACCTTGAGTGGTGCAAGAAATTACAGAGTGAAGAGATGGGAACAAAAAGGGCAAAGCAAAACAGAAAGAATTAGTTTCAAAGATCAATAAGAGAGGGGAAAGACCGAAGCTATAGGGTTTTTGTTATCTTCCTCCTTCGCCTGGTGTTTGATGGAGATAATACAATGGAACATCAAATTCGATCTACACAATGTACCTTTGATTGGGTAGTGCCAGTTGAGTATGAATTAGTTAGTGGAAATATGAGATATTTAGATTTGTTTAGATGAATTTTAAGCAGTAAGTGGTTATAAATAAGGAGGGAGATGTGAGGGAGAAAAAATATTTGGATTTTGTGTGGGAGACAAGGCTGCGATCTGTGAGATCCCACGTCGGTTGGAGAGGGGAATGAAACATTCCTTATAAGGGTATGGAAACCTCTCCCTAACAGATGCGTTTTAAAAACCGTGAGACTGACAGCGATACGTAACGGGTCAAAGAAAACAATATTTGCTAGTGGTGGGTTTTGTTTGTTTAGAGTCAGACACCAGGCGCTGTGCCAGCGAGGACACTGGCTCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAAGGGAACAAAGCATTCCTCATAAGGGTGTGAAGATCTCTCCCTACAGTAGACACGTTTTAAAATCATGAGATTGGCAACGATACGTAATGGGCCAAAGCAGACAAATTCTGTTAGCAGTGTGCTCGGCTGTTACAAGTACAAAACGATCTAATTTTTGTAATTTCTATAACTTGATTGCTGGGTACTGATATATTTACTGGCACCACAATTATCTGTCTTTGTAGGTGTCATTTGGAGATATGATTGCCTGTGACAACGAAAATGTAAGTCCTCTCTGGTATTATTGCGTTGTTCACTTCCTACCAATATTTTAAAAAATAGTTTCTAAACTTATTTTTGTAGACTAAGAAATCAAATATTCTTTAAGAAAGTTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACTAAATCGATATCAAATGAGATCTTAATGGTTACTTTTATGCCATTGACAGTGTCAAGGAGGTGAATGGTTTCATTATTCCTGCGTTGGACTGACTCCAGAAACAAGATTTAAAGGAAAGTGGTATTGTCCAACCTGCAAAGTATTACCACAATGTCAATAACGAAGGTGCACAGGCAAAAATTTC

mRNA sequence

ATGGACGTGGAGATGATAGATAGCCATATTAAACGACTTGATGAGGATCTAAACAACTTTGCAGAAGATCTGAAACAAGAGGGAAAAATTTCACCAGATGAACCAGCAATTCTTCCACCATTGCCACTAGTTTCGAAAAATGAAAAGCGCAAATCAATATATATGGTACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGAGATTTTGAGCTCATGCCTCCTCCAGGAAGCCATAAAAAGGACTTTGCACCTTCACTTGATGTAGATCAGCCCATTGATCCAAATGAACCTACGTATTGCATTTGTCATCAGGTGTCATTTGGAGATATGATTGCCTGTGACAACGAAAATGTAAGTCCTCTCTGTGTCAAGGAGGTGAATGGTTTCATTATTCCTGCGTTGGACTGACTCCAGAAACAAGATTTAAAGGAAAGTGGTATTGTCCAACCTGCAAAGTATTACCACAATGTCAATAACGAAGGTGCACAGGCAAAAATTTC

Coding sequence (CDS)

ATGGACGTGGAGATGATAGATAGCCATATTAAACGACTTGATGAGGATCTAAACAACTTTGCAGAAGATCTGAAACAAGAGGGAAAAATTTCACCAGATGAACCAGCAATTCTTCCACCATTGCCACTAGTTTCGAAAAATGAAAAGCGCAAATCAATATATATGGTACCTCAATCTAAGAGGCCAGATTACAGGGACCGGGATTGGGATAGGGAGCGTGATCGAGATTTTGAGCTCATGCCTCCTCCAGGAAGCCATAAAAAGGACTTTGCACCTTCACTTGATGTAGATCAGCCCATTGATCCAAATGAACCTACGTATTGCATTTGTCATCAGGTGTCATTTGGAGATATGATTGCCTGTGACAACGAAAATGTAAGTCCTCTCTGTGTCAAGGAGGTGAATGGTTTCATTATTCCTGCGTTGGACTGA

Protein sequence

MDVEMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPDYRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDNENVSPLCVKEVNGFIIPALD

Homology

[Close]

BLAST of Carg19562 vs. NCBI nr
Match: KAG7033672.1 (PHD finger protein ING2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.1 bits (767), Expect = 1.0e-77
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MDVEMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSK 60
           MDVEMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSK
Sbjct: 1   MDVEMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSK 60

Query: 61  RPDYRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIA 120
           RPDYRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIA
Sbjct: 61  RPDYRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIA 120

Query: 121 CDNENVSPLCVKEVNGFIIPALD 144
           CDNENVSPLCVKEVNGFIIPALD
Sbjct: 121 CDNENVSPLCVKEVNGFIIPALD 143

[Close]

BLAST of Carg19562 vs. NCBI nr
Match: XP_022949615.1 (PHD finger protein ING2-like [Cucurbita moschata] >KAG6603493.1 PHD finger protein ING2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-64
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. NCBI nr
Match: XP_023543183.1 (PHD finger protein ING2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRD ELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDLELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. NCBI nr
Match: XP_022978265.1 (PHD finger protein ING2-like [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLV KNEKRKSIYMVPQSKR D
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVLKNEKRKSIYMVPQSKRLD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. NCBI nr
Match: XP_022966434.1 (PHD finger protein ING2-like [Cucurbita maxima] >XP_023517876.1 PHD finger protein ING2-like [Cucurbita pepo subsp. pepo] >KAG6595509.1 PHD finger protein ING2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPA LPPLPLVSKNEKRK IY+ PQSKRPD
Sbjct: 101 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAALPPLPLVSKNEKRKPIYIAPQSKRPD 160

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 161 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 220

Query: 124 EN 126
           EN
Sbjct: 221 EN 222

[Close]

BLAST of Carg19562 vs. ExPASy Swiss-Prot
Match: B3H615 (PHD finger protein ING2 OS=Arabidopsis thaliana OX=3702 GN=ING2 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-50
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 109 DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 168

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 169 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 226

Query: 124 EN 126
           EN
Sbjct: 229 EN 226

[Close]

BLAST of Carg19562 vs. ExPASy Swiss-Prot
Match: Q9UNL4 (Inhibitor of growth protein 4 OS=Homo sapiens OX=9606 GN=ING4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           EM+D HI+RLD DL  F  DLK++   S D  +        SK +K+       ++ R  
Sbjct: 91  EMVDKHIRRLDTDLARFEADLKEKQIESSDYDS------SSSKGKKKGRTQKEKKAARAR 150

Query: 64  YRDRDWDRERDRDFE-------LMPPPGSHKKDFA---PSLDVDQPIDPNEPTYCICHQV 123
            + ++ D E  +  +         P  G     F    PS  +D P+DPNEPTYC+CHQV
Sbjct: 151 SKGKNSDEEAPKTAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQV 210

Query: 124 SFGDMIACDNENVS 128
           S+G+MI CDN + S
Sbjct: 211 SYGEMIGCDNPDCS 218

[Close]

BLAST of Carg19562 vs. ExPASy Swiss-Prot
Match: Q8C0D7 (Inhibitor of growth protein 4 OS=Mus musculus OX=10090 GN=Ing4 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           EM+D HI+RLD DL  F  DLK++   S D  +        SK +K+       ++ R  
Sbjct: 91  EMVDKHIRRLDTDLARFEADLKEKQIESSDYDS------SSSKGKKKGRTQKEKKAARAR 150

Query: 64  YRDRDWDRERDRDFE-------LMPPPGSHKKDFA---PSLDVDQPIDPNEPTYCICHQV 123
            + ++ D E  +  +         P  G     F    PS  +D P+DPNEPTYC+CHQV
Sbjct: 151 SKGKNSDEEAPKAAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQV 210

Query: 124 SFGDMIACDNENVS 128
           S+G+MI CDN + S
Sbjct: 211 SYGEMIGCDNPDCS 218

[Close]

BLAST of Carg19562 vs. ExPASy Swiss-Prot
Match: Q3T095 (Inhibitor of growth protein 4 OS=Bos taurus OX=9913 GN=ING4 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           EM+D HI+RLD DL  F  DLK++   S D  +           +++K+     + K  D
Sbjct: 91  EMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSSSKGKKSRTQKEKKAARARSKGKNSD 150

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFA---PSLDVDQPIDPNEPTYCICHQVSFGDMIA 123
                  +++ +     P  G     F    PS  +D P+DPNEPTYC+CHQVS+G+MI 
Sbjct: 151 EEAPKAAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIG 210

Query: 124 CDNENVS 128
           CDN + S
Sbjct: 211 CDNPDCS 217

[Close]

BLAST of Carg19562 vs. ExPASy Swiss-Prot
Match: Q5ZKY4 (Inhibitor of growth protein 4 OS=Gallus gallus OX=9031 GN=ING4 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-13
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           EM+D HI+RLD DL  F  DLK++   S D  +        SK +K+       ++ R  
Sbjct: 91  EMVDKHIRRLDTDLARFEADLKEKQIESSDYDS------SSSKGKKKGRAQKEKKAARAR 150

Query: 64  YRDRDWDRERDRDFEL----------MPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQV 123
            + ++ D E  +  +              P     +  PS  +D P+DPNEPTYC+CHQV
Sbjct: 151 SKGKNSDEEAPKTAQKKLKLVRTSTEYGMPSVTFGNVHPSDVLDMPVDPNEPTYCLCHQV 210

Query: 124 SFGDMIACDNENVS 128
           S+G+MI CDN + S
Sbjct: 211 SYGEMIGCDNPDCS 218

[Close]

BLAST of Carg19562 vs. ExPASy TrEMBL
Match: A0A6J1GD88 (PHD finger protein ING OS=Cucurbita moschata OX=3662 GN=LOC111452955 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 120/122 (98.36%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. ExPASy TrEMBL
Match: A0A6J1IPK9 (PHD finger protein ING OS=Cucurbita maxima OX=3661 GN=LOC111478300 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLV KNEKRKSIYMVPQSKR D
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVLKNEKRKSIYMVPQSKRLD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. ExPASy TrEMBL
Match: A0A6J1HTT1 (PHD finger protein ING OS=Cucurbita maxima OX=3661 GN=LOC111466087 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPA LPPLPLVSKNEKRK IY+ PQSKRPD
Sbjct: 101 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAALPPLPLVSKNEKRKPIYIAPQSKRPD 160

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 161 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 220

Query: 124 EN 126
           EN
Sbjct: 221 EN 222

[Close]

BLAST of Carg19562 vs. ExPASy TrEMBL
Match: A0A0A0KWF6 (PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_4G192170 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.7e-62
Identity = 113/122 (92.62%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNE+R+ +++ PQSKRPD
Sbjct: 106 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNERRRPVFITPQSKRPD 165

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 166 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 225

Query: 124 EN 126
           EN
Sbjct: 226 EN 227

[Close]

BLAST of Carg19562 vs. ExPASy TrEMBL
Match: A0A6J1EBN2 (PHD finger protein ING OS=Cucurbita moschata OX=3662 GN=LOC111432554 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.7e-62
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSHIKRLDEDLNNFAEDLKQEGKISPDEPA LPPLPLV KNEKRK IY+ PQSKRPD
Sbjct: 101 DLIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAALPPLPLVLKNEKRKPIYIAPQSKRPD 160

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN
Sbjct: 161 YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 220

Query: 124 EN 126
           EN
Sbjct: 221 EN 222

[Close]

BLAST of Carg19562 vs. TAIR 10
Match: AT1G54390.1 (PHD finger protein-related )

HSP 1 Score: 207.2 bits (526), Expect = 8.6e-54
Identity = 107/162 (66.05%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 109 DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 168

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 169 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 228

Query: 124 ENVSPL-----------------------CVKEVNGFIIPAL 143
           ENVS L                         KEVNGF I AL
Sbjct: 229 ENVSLLSQHLIIYFLMYSCYDETFCSCFDSAKEVNGFTIHAL 266

[Close]

BLAST of Carg19562 vs. TAIR 10
Match: AT1G54390.2 (PHD finger protein-related )

HSP 1 Score: 207.2 bits (526), Expect = 8.6e-54
Identity = 107/162 (66.05%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 109 DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 168

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 169 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 228

Query: 124 ENVSPL-----------------------CVKEVNGFIIPAL 143
           ENVS L                         KEVNGF I AL
Sbjct: 229 ENVSLLSQHLIIYFLMYSCYDETFCSCFDSAKEVNGFTIHAL 266

[Close]

BLAST of Carg19562 vs. TAIR 10
Match: AT1G54390.4 (PHD finger protein-related )

HSP 1 Score: 200.7 bits (509), Expect = 8.1e-52
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 109 DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 168

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 169 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 226

Query: 124 EN 126
           EN
Sbjct: 229 EN 226

[Close]

BLAST of Carg19562 vs. TAIR 10
Match: AT1G54390.3 (PHD finger protein-related )

HSP 1 Score: 200.7 bits (509), Expect = 8.1e-52
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 109 DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 168

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 169 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 226

Query: 124 EN 126
           EN
Sbjct: 229 EN 226

[Close]

BLAST of Carg19562 vs. TAIR 10
Match: AT1G54390.5 (PHD finger protein-related )

HSP 1 Score: 200.7 bits (509), Expect = 8.1e-52
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 4   EMIDSHIKRLDEDLNNFAEDLKQEGKISPDEPAILPPLPLVSKNEKRKSIYMVPQSKRPD 63
           ++IDSH+KRLDEDLNNFAEDLKQEGKI PDEP++LPPLP+V K EKRKS Y  PQ K+ D
Sbjct: 89  DLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKID 148

Query: 64  YRDRDWDRERDRDFELMPPPGSHKKDFAPSLDVDQPIDPNEPTYCICHQVSFGDMIACDN 123
           YRDRDWD  RDRDFELMPPPGS++KD  P    +QPIDPNEPTYC+CHQVSFGDMIACDN
Sbjct: 149 YRDRDWD--RDRDFELMPPPGSNRKDLMPI--EEQPIDPNEPTYCVCHQVSFGDMIACDN 206

Query: 124 EN 126
           EN
Sbjct: 209 EN 206

The following BLAST results are available for this feature:

BLAST of Carg19562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033672.1	1.0e-77	100.00	PHD finger protein ING2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022949615.1	3.0e-64	98.36	PHD finger protein ING2-like [Cucurbita moschata] >KAG6603493.1 PHD finger prote...	[more]
XP_023543183.1	1.5e-63	97.54	PHD finger protein ING2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978265.1	2.1e-62	96.72	PHD finger protein ING2-like [Cucurbita maxima]	[more]
XP_022966434.1	3.6e-62	95.08	PHD finger protein ING2-like [Cucurbita maxima] >XP_023517876.1 PHD finger prote...	[more]

BLAST of Carg19562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H615	1.1e-50	77.87	PHD finger protein ING2 OS=Arabidopsis thaliana OX=3702 GN=ING2 PE=1 SV=1	[more]
Q9UNL4	1.5e-13	36.57	Inhibitor of growth protein 4 OS=Homo sapiens OX=9606 GN=ING4 PE=1 SV=1	[more]
Q8C0D7	1.9e-13	36.57	Inhibitor of growth protein 4 OS=Mus musculus OX=10090 GN=Ing4 PE=1 SV=2	[more]
Q3T095	2.5e-13	36.22	Inhibitor of growth protein 4 OS=Bos taurus OX=9913 GN=ING4 PE=2 SV=1	[more]
Q5ZKY4	9.4e-13	35.07	Inhibitor of growth protein 4 OS=Gallus gallus OX=9031 GN=ING4 PE=2 SV=1	[more]

BLAST of Carg19562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD88	1.4e-64	98.36	PHD finger protein ING OS=Cucurbita moschata OX=3662 GN=LOC111452955 PE=3 SV=1	[more]
A0A6J1IPK9	1.0e-62	96.72	PHD finger protein ING OS=Cucurbita maxima OX=3661 GN=LOC111478300 PE=3 SV=1	[more]
A0A6J1HTT1	1.8e-62	95.08	PHD finger protein ING OS=Cucurbita maxima OX=3661 GN=LOC111466087 PE=3 SV=1	[more]
A0A0A0KWF6	8.7e-62	92.62	PHD finger protein ING OS=Cucumis sativus OX=3659 GN=Csa_4G192170 PE=3 SV=1	[more]
A0A6J1EBN2	8.7e-62	94.26	PHD finger protein ING OS=Cucurbita moschata OX=3662 GN=LOC111432554 PE=3 SV=1	[more]

BLAST of Carg19562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54390.1	8.6e-54	66.05	PHD finger protein-related	[more]
AT1G54390.2	8.6e-54	66.05	PHD finger protein-related	[more]
AT1G54390.4	8.1e-52	77.87	PHD finger protein-related	[more]
AT1G54390.3	8.1e-52	77.87	PHD finger protein-related	[more]
AT1G54390.5	8.1e-52	77.87	PHD finger protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 99..133 e-value: 2.6E-10 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83
None	No IPR available	PANTHER	PTHR10333:SF101	PHD FINGER PROTEIN ING2	coord: 4..126
IPR028651	ING family	PANTHER	PTHR10333	INHIBITOR OF GROWTH PROTEIN	coord: 4..126
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 83..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19562-RA	Carg19562-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0035064	methylated histone binding