Carg19523 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19523
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thioredoxin H-type-like
Location	Carg_Chr03: 3693337 .. 3697298 (+)
RNA-Seq Expression	Carg19523
Synteny	Carg19523

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCATTTCGATTCCCAATTCAGAGAGAGAGAGAGAGAGAGATCCTTCAAAATTTTCAATTCGTCAAGCAATCCGATCGTCGTTGACCGACGTTGTCTTATCCCTCTCCGATTTGACCCCTTTTCCGACAGCTTCCCATTAAAATCAATATCCTGAAGAAGGTTCATCCACGAATCCCTGTTTGGTTTTTTTTTGTTTTCTCCACGATTTTTGGATGTCATCATCCCTCCACGGACTACTGAATTGACTCGAGGCTCCAATTCGGGGGTTGTTGAGGGTAATTTTTCTGTCTCTGTAATGGGATCCTCCTGCTCTACTCTTTTTTAATTGTTTTTCAGTGGTTTGTTTATGAATCTAATGAGATGGGTATAGCTGTGTCCTTTTCAATTCTATTATGTTCATGATTCTGTTCTATTCCTTTCTGCTCCAATGCCCTTTTTCTTTTGAATGATACAGTCATTGGCTCCTTGTTTATTTGTTTGTTGGTTGATGAACTTTGAAGTTTGTGTCAACGTTGTAACTTTTAAGGTTGTTTTAGCACTGTGATAAAAGTGGAGCTAGTCTTTGTTTGGTGTCTTTTTCCCAGAATTTGTAACATGTCTGTGAATTGGAAACATTTGCAATAGAAAATGAGTTAAATGTTATGTTTTCTTCCATTGATAGCATATGGTTATACTGATATTTTCTTATCGTTATTTCAGGCTAACCTGTGGTACCTAGGACACTTCGAACATCATCTGCACTTGGACCGCCAAATGGGACTTTGTGCTAGTAAGGTAAGAGCCATTTGGAACATTTAATCTAGTAATGTTAGTAGAGGACTTTGTGGTGGTTTGTCGTGTTGGATTGATGTTTGTACCTGGAACTTTTTTTTTTAATCAATTGTGATACCTAAATAGAATATTATGGATCAGGCCGAAGTTATGAGTTAGAACGTTGATGAGTAACGGGGGAATGAATTTGGCTAGAGCCTGGTTCTGTGGGGTTCAAAGGAGGACTAGATATGTGAGATCCCACATCGGTTGGAAAGGAGAACGAAACATTCTTTATCCGTGTGGAAACTTCTCCCTAGCAGACGTGGTTTAAAAACCTTAAGGGGAAGCTTGAAAAGAAAAGCCCAAAGATGGCACTATCTGTTAGCGGTGGGTTGGGCTGTTATAAATGGTATCAAAGCTAGACATGGGATGATGTGCAGTGAGGAGGTTGAGTTTCGATGTGGGGTGGACACGAGGCGGTGTGCCAACAAAGACGCTGGGCCTCGAAGGGGGTGTATTGGGGGGTCCCACATCGATTGGAGAAGGAAACGAGTGCCAGTGAGGGCGCTGGGTCCTGAAGGGGGGTGGATTGTGAGATCCCGCATCGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTAAGGGGAAGCCTGAAAGGGAAAGCCCAAAGATGACACTATCTGCTAGCGGTGGGTTTGGGCTGTTATAAATGGTATCAGAGCTAGACATGGGGCAATGTGCAGTGAGGAGGTTGAGTCCTGAAGGGGGGTGGACACAAGGCGGTGTGCCAACAAGGACACTGGGCCTCAAAGGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGAACGAAACATTCTCTATAAGGTGTGGAAACCTCTTCTTAGCAGACGTGTTTTAAAAACCTTGAAGGAAAGCCCAAAGAGGACAATATCTGCTAGAGGTGGGCTTGGGCTGTGCTTGGCCAACAAATATTGTTGAAGAAGGTGCTTTATAATCATTAGCATTGCACCCTAGAAGGGTACTATTCAACATTTTCTACAGTTATACACTGACTTCAGCAATGCCCCAAAACTTCGATTCCACCCGAGCGTTCGTCAGCTCCTCCTCGTAATTTTGTGTTGACGATCCTATAAAATAAAAACTACGAAAAAGGATCATTTCTGAGATTTCGGCGCACTGCCTGTTTTATGCTCGTTAACGTTCATCTAACTCGGAAGTTTTTGTGTTCCTTGTTTCTAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTAAGATTTTGATTAATTTATTGCCTTTGAGCACTGCTGTTGTTTCTGGATGTTATCTCGTAGATAAATCAGGCCCGTTCGTGTTCGTGTTCGTGTTCGTTTCTTTAATTATCTGATAAAAAACGGAACGACTCAGAGAGTATAATATATAGTCTATTTTATGTCATGTCCTTATTTTGTTGCTCAGTTCTTTGCAAGGGAGGTGGGCTTGATCCTCCCCTGCCTTTGGTAATGAAAATTCTCTTATCAAAATGGGTTTAATCCTTTCGTAATCGAGATTATGCGTCGACAGGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGTGAGTAATGAAGTACAATATCATTTATGGAAGAATTTATTCAACTCTTTTTTTCATTCTGGTTCTTGTACGTTGGGAATGCATTGTTTTTGTCAATCTGAACATAGCTCATTTGATAAGATACTAATTATCATCATCAGCCCAGTAGATATGTGAGATCTCACTTCGGTTGGAAAGTGGAATAAAACATTACTTATAAGGGTGTGGAAGCATCTCCCTAGTAGACACATTTAAAATCGTGAGGCTGACGCGATACGTAACAGGCCAAAGTAGATAATATTTGCTAATGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAGACATTGTGTAAGGACCCAAATCCACTGCTAGTAGATATTGTCCTCTTTAGGCTTTCCCTTTCGGGCTTCCTCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAGGTTTCCATACCCTTATAAATGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATTACAATGAATGTGGATCTGGGTCTTTACAAATGGTATCAGAGCCAGTCATCGGACGATTTGTCAGCCTTCTCGCTGTTCCTCGAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGAACGCTGGGTCCCAAAGGGGGTGGATTTGGTGGTAGTCCCACATCGATTAGAGAAAGGAATGAGTGTCAGCAAAGACGCTGGGTCCCAAAGGGGGGTGGATTGTGTTGTCCCACATTGGTTGAGGAGAATAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGAAAGCCCGAAAGGGAAAGCCCAAAGAGGACAAGATCTACTAGCGGTGGATTTGGGTCGTTACACATTGGGCAGTGTGCCAGCGAGGACGTTGGGCCCCCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTAGAAAAGGGAACGAAACATTTCTTATAAGGGTGTGGAAACATCTCCCTGGTAGACATGTTTTAAAACTGTGAAGTGCGATACATAATGGTCTAAAGTGGACAATATCTACTACTGGTGGACTTGAGCTGTTACAATTGGTATTAGAGCCAGACACCGAGCTATGTGCCAGCGAGAACGCTGGCCCCCAAGGAGGGTGGATTGTGAGATGAAGCTCGTCTAATTCACTACCCCTCCGTTCACTTCACAATCAGCTATAGATTAAGCTTGTTTGGGCTACATTTCTCAGCATATGCTTTGGGTGTTGCAGGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA

mRNA sequence

CGCCCATTTCGATTCCCAATTCAGAGAGAGAGAGAGAGAGAGATCCTTCAAAATTTTCAATTCGTCAAGCAATCCGATCGTCGTTGACCGACGTTGTCTTATCCCTCTCCGATTTGACCCCTTTTCCGACAGCTTCCCATTAAAATCAATATCCTGAAGAAGGTTCATCCACGAATCCCTGTTTGGTTTTTTTTTGTTTTCTCCACGATTTTTGGATGTCATCATCCCTCCACGGACTACTGAATTGACTCGAGGCTCCAATTCGGGGGTTGTTGAGGGCTAACCTGTGGTACCTAGGACACTTCGAACATCATCTGCACTTGGACCGCCAAATGGGACTTTGTGCTAGTAAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA

Coding sequence (CDS)

ATGGGACTTTGTGCTAGTAAGTCCGAAACCAAAGACGATGAGTCTGAGCATCATGTCGAGTTTGCCACCGGAAATGTGCAGCTCATCACAACCAAAGAAGCTTGGGAGCAAAAGATGGAAGAAGCTAATAAGGATGGCAAAATTGTGATAGCGAACTTCAGTGCATCGTGGTGTGGTCCGTGCAAGGTGGTTGCTCCATTCTACAGCGAATTGTCGGAGAAATACCCGTCGTTGATGTTCCTAGTAGTCGATGTTGATGAATTAACTGATTTCAGCACCACTTGGGATATCAAAGCTACTCCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTCGTCGGGGCGAATAAACCCGAACTAGAGCTGAAAGTCACTGCATTAGCGGATTCTCTTCCTCCCAATCAA

Protein sequence

MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPELELKVTALADSLPPNQ

Homology

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BLAST of Carg19523 vs. NCBI nr
Match: KAG7033711.1 (hypothetical protein SDJN02_03436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP
Sbjct: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 121 PELELKVTALADSLPPNQ 138

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BLAST of Carg19523 vs. NCBI nr
Match: XP_022950143.1 (thioredoxin H-type-like [Cucurbita moschata] >XP_022950144.1 thioredoxin H-type-like [Cucurbita moschata] >XP_023543289.1 thioredoxin H-type-like [Cucurbita pepo subsp. pepo] >XP_023543290.1 thioredoxin H-type-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP
Sbjct: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 121 PELELKVTALADSLPPNQ 138

[Close]

BLAST of Carg19523 vs. NCBI nr
Match: KAG6603527.1 (Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.9 bits (725), Expect = 7.5e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP
Sbjct: 208 MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 267

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 268 CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 327

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 328 PELELKVTALADSLPPNQ 345

[Close]

BLAST of Carg19523 vs. NCBI nr
Match: XP_022978310.1 (thioredoxin H-type-like [Cucurbita maxima] >XP_022978312.1 thioredoxin H-type-like [Cucurbita maxima])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQK+EEANKDGKIVIANFSA WCGP
Sbjct: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKLEEANKDGKIVIANFSAWWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 121 PELELKVTALADSLPPNQ 138

[Close]

BLAST of Carg19523 vs. NCBI nr
Match: XP_038883656.1 (thioredoxin H9 [Benincasa hispida] >XP_038883657.1 thioredoxin H9 [Benincasa hispida])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 120/138 (86.96%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSET+DDESEHHVEFA GNV LITTK+AW+QK+EEAN  GKIVIANFSA+WCGP
Sbjct: 1   MGLCASKSETRDDESEHHVEFAAGNVHLITTKDAWDQKLEEANTGGKIVIANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CK+VAPFYSELSEK+PSLMFLVVDVDELTDFST+WDIKATPTFFFLK GQQIDKLVGANK
Sbjct: 61  CKMVAPFYSELSEKHPSLMFLVVDVDELTDFSTSWDIKATPTFFFLKGGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
            ELE K+TA+ADSLP NQ
Sbjct: 121 IELEKKITAMADSLPANQ 138

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BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: P85801 (Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.6e-55
Identity = 96/137 (70.07%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLC +K     D+ E H+E A GNV LITTKE W+QK+ EA++DGKIV+ANFSA WCGP
Sbjct: 1   MGLCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CK +AP+Y ELSE YPSLMFLV+DVDEL+DFS +W+IKATPTFFFL++GQQ+DKLVGANK
Sbjct: 61  CKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120

Query: 121 PELELKVTALADSLPPN 138
           PEL  K+TA+ DSLPP+
Sbjct: 121 PELHKKITAILDSLPPS 137

[Close]

BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9C9Y6 (Thioredoxin H9 OS=Arabidopsis thaliana OX=3702 GN=TRX9 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-53
Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MG C SK +  DD+S H+VEF+ GNV LITTKE+W+ K+ EA++DGKIV+ANFSA+WCGP
Sbjct: 1   MGSCVSKGK-GDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CK+VAPF+ ELSEK+ SLMFL+VDVDEL+DFS++WDIKATPTFFFLK GQQI KLVGANK
Sbjct: 61  CKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANK 120

Query: 121 PELELKVTALADSLP 136
           PEL+ KVT++ DS+P
Sbjct: 121 PELQKKVTSIIDSVP 134

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BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9AS75 (Thioredoxin H4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0168200 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.5e-47
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MG C  K E  D+E +  ++F  GNV +I+ KE W+ K+ EANKDGKIVIANFSA+WCGP
Sbjct: 1   MGSCVGK-ERSDEEDK--IDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           C+V+AP Y+E+S+ YP  MFL +DVDEL DFS++WDI+ATPTFFFLK G+Q+DKLVGANK
Sbjct: 61  CRVIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANK 120

Query: 121 PELELKVTALADS 134
           PELE KV ALADS
Sbjct: 121 PELEKKVAALADS 130

[Close]

BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q0DKF1 (Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-46
Identity = 85/132 (64.39%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MG C  K     +E +  ++F  GNV +IT+KE W++K+EEANKDGKIV+ANFSASWCGP
Sbjct: 1   MGGCVGKGRRHIEEDK--LDFKGGNVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           C+V+AP Y+E+S+ YP LMFL +DVD+L DFS++WDI+ATPTFFF+K  +Q+DKLVGANK
Sbjct: 61  CRVIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANK 120

Query: 121 PELELKVTALAD 133
           PELE KV ALAD
Sbjct: 121 PELEKKVQALAD 130

[Close]

BLAST of Carg19523 vs. ExPASy Swiss-Prot
Match: Q9LXZ8 (Putative thioredoxin H10 OS=Arabidopsis thaliana OX=3702 GN=At3g56420 PE=3 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 4   CASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKV 63
           C S +             + G V  ++  E WE+K+ EAN  GKI++ NFSA WC PCK 
Sbjct: 20  CCSNNNNNSYGQTRSQHGSKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKK 79

Query: 64  VAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPEL 123
           + P + +L+ +YPS++F+ VDV+EL +FS  W+++ATPT  FLK+G+Q+DKLVGA   EL
Sbjct: 80  IEPVFRDLASRYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSEL 139

Query: 124 ELKVTALAD 133
           + K  A AD
Sbjct: 140 QKKTAAAAD 148

[Close]

BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A6J1GEY7 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453320 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.6e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP
Sbjct: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 121 PELELKVTALADSLPPNQ 138

[Close]

BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A6J1IPQ7 (thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111478337 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQK+EEANKDGKIVIANFSA WCGP
Sbjct: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKLEEANKDGKIVIANFSAWWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
           PELELKVTALADSLPPNQ
Sbjct: 121 PELELKVTALADSLPPNQ 138

[Close]

BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A5A7SL29 (Thioredoxin H-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00370 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63
Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLC SKSET+DD+SEHHVEFA GNV LITTKE+W+QK+EEAN  GKIVIANFSA+WCGP
Sbjct: 1   MGLCFSKSETRDDDSEHHVEFAAGNVHLITTKESWDQKLEEANTSGKIVIANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKY SLMFLVVDVDELTDFST+WDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYESLMFLVVDVDELTDFSTSWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
            ELE K+ A+ADSLPPN+
Sbjct: 121 IELEKKIIAVADSLPPNR 138

[Close]

BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A0A0L068 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334700 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63
Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLC SK+ETKDD+S+HHVEFA G V LITTKEAW+QK+EEAN  GKIVIANFSA+WCGP
Sbjct: 1   MGLCFSKAETKDDDSDHHVEFAAGKVHLITTKEAWDQKLEEANTSGKIVIANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKY SLMFLVVDVDELTDFST+WDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYESLMFLVVDVDELTDFSTSWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
            ELE K+TA+ADSLPPN+
Sbjct: 121 IELEKKITAVADSLPPNR 138

[Close]

BLAST of Carg19523 vs. ExPASy TrEMBL
Match: A0A1S3CKE7 (thioredoxin H-type OS=Cucumis melo OX=3656 GN=LOC103501473 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63
Identity = 119/138 (86.23%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MGLC SKSET+DD+SEHHVEFA GNV LITTKE+W+QK+EEAN  GKIVIANFSA+WCGP
Sbjct: 1   MGLCFSKSETRDDDSEHHVEFAAGNVHLITTKESWDQKLEEANTSGKIVIANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CKVVAPFYSELSEKY SLMFLVVDVDELTDFST+WDIKATPTFFFLKEGQQIDKLVGANK
Sbjct: 61  CKVVAPFYSELSEKYESLMFLVVDVDELTDFSTSWDIKATPTFFFLKEGQQIDKLVGANK 120

Query: 121 PELELKVTALADSLPPNQ 139
            ELE K+ A+ADSLPPN+
Sbjct: 121 IELEKKIIAVADSLPPNR 138

[Close]

BLAST of Carg19523 vs. TAIR 10
Match: AT3G08710.1 (thioredoxin H-type 9 )

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-54
Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MG C SK +  DD+S H+VEF+ GNV LITTKE+W+ K+ EA++DGKIV+ANFSA+WCGP
Sbjct: 1   MGSCVSKGK-GDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CK+VAPF+ ELSEK+ SLMFL+VDVDEL+DFS++WDIKATPTFFFLK GQQI KLVGANK
Sbjct: 61  CKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANK 120

Query: 121 PELELKVTALADSLP 136
           PEL+ KVT++ DS+P
Sbjct: 121 PELQKKVTSIIDSVP 134

[Close]

BLAST of Carg19523 vs. TAIR 10
Match: AT3G08710.2 (thioredoxin H-type 9 )

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-54
Identity = 97/135 (71.85%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MGLCASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGP 60
           MG C SK +  DD+S H+VEF+ GNV LITTKE+W+ K+ EA++DGKIV+ANFSA+WCGP
Sbjct: 1   MGSCVSKGK-GDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGP 60

Query: 61  CKVVAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANK 120
           CK+VAPF+ ELSEK+ SLMFL+VDVDEL+DFS++WDIKATPTFFFLK GQQI KLVGANK
Sbjct: 61  CKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANK 120

Query: 121 PELELKVTALADSLP 136
           PEL+ KVT++ DS+P
Sbjct: 121 PELQKKVTSIIDSVP 134

[Close]

BLAST of Carg19523 vs. TAIR 10
Match: AT3G56420.1 (Thioredoxin superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 4   CASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKV 63
           C S +             + G V  ++  E WE+K+ EAN  GKI++ NFSA WC PCK 
Sbjct: 20  CCSNNNNNSYGQTRSQHGSKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKK 79

Query: 64  VAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPEL 123
           + P + +L+ +YPS++F+ VDV+EL +FS  W+++ATPT  FLK+G+Q+DKLVGA   EL
Sbjct: 80  IEPVFRDLASRYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSEL 139

Query: 124 ELKVTALAD 133
           + K  A AD
Sbjct: 140 QKKTAAAAD 148

[Close]

BLAST of Carg19523 vs. TAIR 10
Match: AT2G40790.1 (C-terminal cysteine residue is changed to a serine 2 )

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-29
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 4   CASKSETKDDESEHHVEFATGNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKV 63
           C ++       S+    F  G V  ++  E WE+K+ EAN  GKI++ NF ASWC P K 
Sbjct: 20  CCNRRNKTQARSQKGSYFIKGKVHPVSRMEKWEEKITEANSHGKILVVNFKASWCLPSKT 79

Query: 64  VAPFYSELSEKYPSLMFLVVDVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPEL 123
           + P Y EL+  Y S++F+ +DV+EL +FS  W++ ATPT  FLK+G+Q+DKLVG +  EL
Sbjct: 80  ILPIYQELASTYTSMIFVTIDVEELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGDAAEL 139

Query: 124 ELKVTALADSL 135
           + K  A A+ L
Sbjct: 140 QKKTAAAANLL 150

[Close]

BLAST of Carg19523 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 48/101 (47.52%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 24  GNVQLITTKEAWEQKMEEANKDGKIVIANFSASWCGPCKVVAPFYSELSEKYPSLMFLVV 83
           G V    T E W +++++AN+   +V+ +F+ASWCGPC+ +APF+++L++K P+++FL V
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65

Query: 84  DVDELTDFSTTWDIKATPTFFFLKEGQQIDKLVGANKPELE 125
           D DEL   ++ W I+A PTF FLKEG+ +DK+VGA K EL+
Sbjct: 66  DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQ 106

The following BLAST results are available for this feature:

BLAST of Carg19523 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033711.1	7.5e-73	100.00	hypothetical protein SDJN02_03436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022950143.1	7.5e-73	100.00	thioredoxin H-type-like [Cucurbita moschata] >XP_022950144.1 thioredoxin H-type-...	[more]
KAG6603527.1	7.5e-73	100.00	Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022978310.1	1.1e-71	98.55	thioredoxin H-type-like [Cucurbita maxima] >XP_022978312.1 thioredoxin H-type-li...	[more]
XP_038883656.1	4.1e-63	86.96	thioredoxin H9 [Benincasa hispida] >XP_038883657.1 thioredoxin H9 [Benincasa his...	[more]

BLAST of Carg19523 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P85801	9.6e-55	70.07	Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1	[more]
Q9C9Y6	6.9e-53	71.85	Thioredoxin H9 OS=Arabidopsis thaliana OX=3702 GN=TRX9 PE=1 SV=1	[more]
Q9AS75	2.5e-47	66.17	Thioredoxin H4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0168200 PE=2 S...	[more]
Q0DKF1	2.1e-46	64.39	Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 S...	[more]
Q9LXZ8	1.8e-29	44.96	Putative thioredoxin H10 OS=Arabidopsis thaliana OX=3702 GN=At3g56420 PE=3 SV=2	[more]

BLAST of Carg19523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEY7	3.6e-73	100.00	thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453320 PE=4 SV=1	[more]
A0A6J1IPQ7	5.3e-72	98.55	thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111478337 PE=4 SV=1	[more]
A0A5A7SL29	5.8e-63	86.23	Thioredoxin H-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G0...	[more]
A0A0A0L068	5.8e-63	86.23	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334700...	[more]
A0A1S3CKE7	5.8e-63	86.23	thioredoxin H-type OS=Cucumis melo OX=3656 GN=LOC103501473 PE=4 SV=1	[more]

BLAST of Carg19523 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08710.1	4.9e-54	71.85	thioredoxin H-type 9	[more]
AT3G08710.2	4.9e-54	71.85	thioredoxin H-type 9	[more]
AT3G56420.1	1.3e-30	44.96	Thioredoxin superfamily protein	[more]
AT2G40790.1	2.4e-29	43.51	C-terminal cysteine residue is changed to a serine 2	[more]
AT3G51030.1	2.5e-26	47.52	thioredoxin H-type 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 57..66 score: 64.83 coord: 49..57 score: 43.52 coord: 96..107 score: 31.39
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..137 e-value: 1.7E-44 score: 152.7
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..137
None	No IPR available	PANTHER	PTHR10438:SF438	THIOREDOXIN	coord: 1..137
None	No IPR available	CDD	cd02947	TRX_family	coord: 40..122 e-value: 5.97248E-30 score: 101.866
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 29..123 e-value: 3.7E-23 score: 81.5
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 8..132 score: 11.64142
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 50..68
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 18..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19523-RA	Carg19523-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007154	cell communication
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0016491	oxidoreductase activity