Carg19519 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19519
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Phospholipid-transporting ATPase
Location	Carg_Chr03: 3721097 .. 3721312 (+)
RNA-Seq Expression	Carg19519
Synteny	Carg19519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

mRNA sequence

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

Coding sequence (CDS)

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

Protein sequence

MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSPFGDNTWSSENCLKKFHFAI

Homology

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: KAG7033715.1 (hypothetical protein SDJN02_03440, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSPFGDNTWSS 60
          MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSPFGDNTWSS
Sbjct: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSPFGDNTWSS 60

Query: 61 ENCLKKFHFAI 72
          ENCLKKFHFAI
Sbjct: 61 ENCLKKFHFAI 71

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_038882874.1 (phospholipid-transporting ATPase 1-like [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MTSDQPLLASSE--------SPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSE        SPS+NRGS GCLCRSASFTSS YDD+Q+DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSGIEYRSPSRNRGSVGCLCRSASFTSSGYDDAQSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WSSENCL++
Sbjct: 61 FGDNGWSSENCLRR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_008463264.1 (PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo] >XP_008463265.1 PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: TYK09761.1 (phospholipid-transporting ATPase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: KAA0025411.1 (phospholipid-transporting ATPase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. ExPASy TrEMBL
Match: A0A1S3CIV6 (Phospholipid-transporting ATPase OS=Cucumis melo OX=3656 GN=LOC103501467 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. ExPASy TrEMBL
Match: A0A5A7SME4 (Phospholipid-transporting ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00500 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. ExPASy TrEMBL
Match: A0A5D3CD45 (Phospholipid-transporting ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00440 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. ExPASy TrEMBL
Match: A0A0A0KY84 (Phospholipid-transporting ATPase OS=Cucumis sativus OX=3659 GN=Csa_4G334150 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD+ +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSQSRNRGSVGCLCRSASFTSSSYDDAHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WSSE+CL +
Sbjct: 61 FGDNAWSSEDCLSR 74

[Close]

BLAST of Carg19519 vs. ExPASy TrEMBL
Match: A0A6J1IJQ2 (Phospholipid-transporting ATPase OS=Cucurbita maxima OX=3661 GN=LOC111477724 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC 50
          MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC
Sbjct: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC 49

The following BLAST results are available for this feature:

BLAST of Carg19519 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033715.1	1.9e-32	100.00	hypothetical protein SDJN02_03440, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038882874.1	2.0e-21	75.68	phospholipid-transporting ATPase 1-like [Benincasa hispida]	[more]
XP_008463264.1	5.9e-21	74.32	PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo] >XP_008463265....	[more]
TYK09761.1	5.9e-21	74.32	phospholipid-transporting ATPase 1-like [Cucumis melo var. makuwa]	[more]
KAA0025411.1	5.9e-21	74.32	phospholipid-transporting ATPase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Carg19519 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIV6	2.8e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis melo OX=3656 GN=LOC103501467 PE=3 SV...	[more]
A0A5A7SME4	2.8e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CD45	2.8e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KY84	4.8e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis sativus OX=3659 GN=Csa_4G334150 PE=3...	[more]
A0A6J1IJQ2	6.5e-18	100.00	Phospholipid-transporting ATPase OS=Cucurbita maxima OX=3661 GN=LOC111477724 PE=...	[more]

BLAST of Carg19519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19519-RA	Carg19519-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045332	phospholipid translocation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0140326	ATPase-coupled intramembrane lipid transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000287	magnesium ion binding