Carg19482 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19482
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	Carg_Chr16: 9882065 .. 9888789 (+)
RNA-Seq Expression	Carg19482
Synteny	Carg19482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAGACCTTTTTCCACTTCCCTCTCGGATTCAAAGCTCCAGGCTCCCACGGTTAATATTCAGCCGTCGCTCCCCACCCGATTTTCTCCTCAACCTTCCTCGAACTAGTAAGTAATTCAAGTTTTATGTTCTTTTAATTGTCAATTCTTTGATTTCATTCGTCGCTGTCGATCGATTTTGAGAATTGTTGTTCTTCGGTCCATGATTTTTGTAATTCTAATTTGTGAGAGAGTTTGAATTACGGCGACGTGGTTTGATTTTGTTTTCATTCAAGCTTGTTACTATTTTTGCTATGATTTGTGGGATTTCAACTAGTCGTAGGGCTTGTTTTTTCTCCTCCCTCAAGGATACTGTTGAGCTAATAGATCGAGTCCCTTCACTTTAGGGTTCGCATAGTTGGGGTTTCTCAGTGGCCCTTCGCGGTCAGAGGATAGTAATTTCATGATAACCGTTTTGCAGCTGCTTTCCAAATGGAGAAATATTTAGTGAATCGAAAATTATGATAAATTTTTATAGAAAAGCAAGACCCAAGTAGGGTTTTTGTGACATTGTTAAAAATTGAAATGGTATTTTGACAGTTTGGAGAGTTAGTACTTGTTGAGTTTATGTACAGAACGATCAACTATTTGCCAGTTCTCTTTTATAATGAATTGTTGGAAAATATGGATTTAAGACATCCAAGTTATTTAGGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTGTACGTCCAGTTTTGCTTCATCTAATGTCTGATTCGTTCATTATTCACTACTTGTTCCACTCTATATCAGTGATATGTTTTTGGATTTTGCAGTAATTCTCTCGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAAGTGAGTCTTTGTACACCTATTCTGGTTTCTAGCTTTGCAAGCGTATTTTTTTATATTATTATTATTTTTTAACTCTTCTATTCTTCTTGGCCCATTTCTTACTTTTCTTTTGATTAGCTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGTAGTCTTTACATCTCTATGGGGCATACTGTTAAAAATCTACTTATACCTTTTTTTTCTTTTATCTTGATTCCAAAGATTCAAGAAAATATTTATTGAATGTTGTACTGCTTACCATATTCAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTTGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGTTGAAATTTGTTTCCTGCTGTCAATTTTATCTCTACCTTCAAATTTTTCTATATATATATTTCATTTCAAACTGATCAAAATATTTTCTACACTTTTATGGTTTAATTTTTTACTTTATCTATAGCCATAAGCTATATGTATTTTCAAAGTTCGCCTCATCCTTTCACAAGCATTTCTTGGCCATTTATATCTTTTTGGTGGTTTTGGATATAACATCAGAGGTGAAAAATGTAAACTATGTTATGGTGTCAGTTCTAGGTATAGTAGGAGGATGTTCATTACTTTAATTTTATTGTATGTTAAGTTATTAAGACTCACATACTCTTTAGACTGTTCTACTACACGTAGGAGTGGTTTTAATATAAGATATTGGACAAGTTCTGTTCTGTTATTTTGAGCTTGGTTGCAGGTTATAGTTACTTTGTTGTATGGTTTACGTTGGTTTTTTCTTAGTGTCAAAAAATAAGAGGAAACAAGTAGCATGTTTGTTTTATGATTCATAGGTTTATGAAGTAAAGAACTTGGAGTACTTACTGCCTCTAATTGTATAACCATCTTTCCACTTTCGGTGCATAGTAAATATTTTGTGATATCAAGGTCTGTTGTTCACGTGCCCCAGTGGAAATTAGGGTACTGAGTTTTTTTTTTACTTGGTGGTAGTTTTAAGTTTCACTATTCATGCCGGTGCCATAGCTAAGTGTTATTGTATCATTGCTCCTTTCAAGTGAATTAAACTTATATTGCATAAGGACATTAGAACGAGAATGAGTCCTGTCCTTGTGACTTAGATACCAAAAATTTGATCGGAGCTGAAATTTTAATGCAATATCAGTGGAATACACAAGATATAACCTCTTACGGGCACAAAAATTTCCCAACTATGTATACATACTACATCCATCTTGCTTTAGATAAGAGGTTCTTCTGCAATCATTGCTTAAATATCTTCTTCTAGAGGGCAACCATAGAATCCAATTGTCAAGTCCTTTCCTGTCTTCAAGTAAGTTGGCCTTTAAAATTTTCACCATGGATTGGTGGCTTTCTTGATAAATGTCAGCAAGAGATGTAGAATTTAATTCATGCCCATACGAGTTCAGTTCATCTTCTCCCATCTTTTTCTGTTTGTGTCCTTTGATTGTGCTGTCTAGTTGAATTGTTTGATTTCTCCCATTCCACTATCAATCCAACCCGTAATATTGGTCAAATGTATGGGCAAAAGAAGCACATAAATCATGCCAATATTTTCCTATTTTCCAGATCAATCAACACCCAACCCCAAAAACTATTCCCAACTGTAATTTGCACTATTTGGGGATCTCCTCATCTTTCCACTCCAACCTAGCGTTATCAGGTATGAGGGCTCTAGCCTCATTGGAAGAGGGAAATTAAGCTCGAGTGATGCAAGGTGTCTTTACAAAGGTGCTAAAACTTCGATCCCCATCCATAAATGCAATTCCCAAAATGAGATCATATGATTCTAGCCACCATTGTCAGATGATTTTGGTCTCTGTGGAATCGGTCCGAGTATTGGCTTGATTTGCGTGCTACTTTTGCCCATACATTCGAGCTATATTTCCTATTTCCCAGATCATTTTCTGAGATCAAATGGCTGGATATCAATTTGATTGAAATTTGATGGGAAATAAACCTGGATTGCTATATTAAAACATGTGGGTGATAACCTTTTTAGACGACTGTTCCTTTCCTTCAACATTTACTAACAAACTCATCATCTTATAGCTTTGTGCCCATAGCATGTATGAGTATGGGAAACCAAAAACTTCTACTTTTTTTGGACAGCTAGTGAATAAATTATAACTATAAAAGACATAAGGATGTACTATATCGAAAACTCTTGTTTTTTATTTGTTTCTTTTACGAATTTTCACTTAATTCATCAACATTTCCGTATAAGTACATCGTTCATTATGTTTTTGTGTTATTGCGTTCGAATTTTAATCTTGTTTCAACAAATGCAGGAATCAAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGTTAAGATGGAGATTTAAGTGCTTTCTGCGTTGATTATCAGGTCTTTGAAGTTCTTCTCTACTGTTATTCTTTATTATGTCTTCAGCATATATACGTATTGATTGATTGGCCAGCATATATCACACGATTTTTAGTTTCATTCAACGGATTGACAATGGAATAACATAACCCTTCTTTATAAACGTGTGTAAAAGAGAATGACATCATCCTCTATTATATTACTGTCTATAACCTTGCTAGGGAGAGGCGTTTCGTATGCTACAATGGGACGACTTATTGAGGAGAAGATGGTTATATTTTTTGTTGCTGATATGTATCCATCATTTTAGTACTTCGATTTCGAGTTTCTTGAGCATATAGAAATCCGTGTTTCAGTGCTTTCGGAATCGTGAAAAGAGATTTATACTCAAATAGGAGTTCGATATCTAATATGGTGCTCAACTTGAGTAACCAATAGTATACGTCTTTCTGGAAAGTCAAATGATTGAATCTCTATTATGAATAATGTTTGAATCTCTATTATGACAGGGAATTCGTTCTTATTTTATACCCAATTAAGTTGAAAAGACCTTTTCAGGATCGATTTTTCTCGCTCGAAATAGGTGAGGTGGGCTGTATCTTGGTTTCTCTAGTGGGGAGACAACGTGGGATTTGATAGCGGCTAATGAAGTTATACTGCAAAAGCCACACACAAGAAAAAGATTTAATGGCCCTGGCCCTATTCGTATTCGTATTCGTTTTCGTATTCGTTTTCGTATTCGTATTGATTGGGCCAATCAAGGCGGAGAAGAATCACAATCCTCAAATGTTGAACTTTTGATTTTACTGGGCTCAACCCCTTCTGTTTGTTTGATTCAAGTTTTATTTTATATTTTTACTTGGTATGTGAATCTTTTCTCAACTGGATTCTCACTTTTCTGTTAATAAGCATTGTAAATTCGTGTACCAATTCTCTGCCTCATTTCAGTCTCTTTGAATCTCATCTTTACCATGCTGAATAGGTGAAATTATACAAGAATACCTTTGAAATTTGGGGACGGGTTGTGCCGCACTTGTTGAGCGAACAAGTCAATCATATGAAAATCGAACTTTACGGACAATCTTGACGTAATCATGTTTTAATTTATAAAACGGGTAAGAAATTTGTTGGGTGAGGTTTGGCAATTACTTAGTCATTTATAGTATATTTTGAGTAAACAAGCATGACCGTAATAGTGAGTGAGTTCGAGCGAACGAAACAACATTTTATGGCAATTCAAAAGAAACGACTGCATCTGCGATCGATCCTCGGTAATCAGGTGGCGGTAGTCATCTCCTTTACTCTTGGGCATGGAGGTTTCTTCTGAACCGGCAAAGCTTCTTCACCATAACGATCACAATTTGAAGGAAGTTCAGGCTACTGTTTGTTTAAAAGAAGAAAAAAAGGAGCTGTGGCTTTGAACTGAACCATGAAGATTTGGGCTTTGGGCCTAGCAGAACGACGTCGTTGCAGTTCTATCTGAGCTGCAGAGGCATTTTTTTCATTTTTCATTTAAATAAAAAAAGAAAAAGAAAAGAAAAAAAGAGCGGAGGCTTTGAATTAGACAATAAAGATTTGGGCTATTGGGCTATTGAGCTTTGGGCTTTGGGCTATTGGGCTTTGGGCTTTTCCACCAACCGAATTGAAAATTAAGGAATTAAATAAAAGAAAAAAGAATACATAAATAACGGCTATCTGGCACTCAATTTACGAAACGCAGAGAAGAAAGAAGAGTGTTCGTTGAAGAAGGCGATGCTATGATATGAAGGCTTCGAAGTGGTAGCAATACATCAATTAATTTCAGGTATCACCTCTTCTTATACACAACTCTGTATCTCGAGGATTTCACTTTCTAAACCAACTGTTCTGCCTTGCTCCTGCGATGAAACCTAATCGATTCGTCGTCTAATCAGGACGCCCAGGGCCCTCCTCAGGAGCCTGTTTTGAAAGCAATTTCAGGTTTCTACCTTATCCTCATGCTAGGCTTCGGAATGGTAAGCAATGAATCAATTAATTTCAGGTATCACCTCTTCTTATACACAACTCTGTCTGTTCATTTCCTTGTGTGAGCTTCTAACTGTTCATGCTCATGTTTCTATTTCACAACGATTGTTCATCTACGCCACATAATTGATTACTTGTTCGTTCGATATTTAGTTCCTTTTAATGTTAATTTAAGTGCAGACAGACTATATCCACACCACACCACCCCAACTCATCACTGTTGCAATTTTCCTTTTAGTGTCTCTTTCTATTCTTTTAATTGACTATTGATTATTGATTATTTTGGTTGGAGTATGTGTCTGATTTTTGTAAGATCCTAAGATCCTGTGTTTGATACTTCAACATTGCTTAATTTTCTAGTGATACTTCAAGTTTTCTTTCGTATATTACTTCCACGTTATGTTATTATTGTTATCTGTAATGTGTGACTGAGATTTACTTAGAATGAAGATTAGCATTATTATATGATAGATTAAGCCTAATTAATTCATATATTTTTCAGTGCATCCATCTAACTTCCGGTGGTTCTTGTGTTTATGATCCTTGAGCTTGGTATGGGCTAGATCCATTTGATTTTAATGCTAATGGACTCAATTTGTGTGCCTGGGCTCATGTATATTAAAGTGGCACAGTTTGATTTGATTTTTCCCCAAAAATGGTGGAGTTTCTGTTGAGTACATGATCAGATGGTGAATTTAGTTTCAGCTGGGAAGGCCCAAGAGGAACAGGAAACAAAGTTCCGACTAGACTATACAACCTTAGAAGAATGCAGGCAGTATCCTCATGAGATCGCTTGAAATGCCCATGGCTATTGATTAGTTCATCCAGTTAAAGTAAAGCTCGAACTCTTAGCTTTAGATTTCAATGTATTTTCTTCTGCTTTTATCAAGTAATCTTGACTCTGTCACACACGCTACTGCTAAATTTCCAGTGTTTGGTCTGCTCCGCATACGCTCATGCAAGTATAGCTTCTCGGAAAGACAGCTCAAATGTCGGTAAGAAACAATCAACTTTCAGTTATACAAGCAAATATAGCTTCTTGGAAAGGCAGCTCAAATGTCGGTAAGAAACAATCAACCTTCAGTTATACTAGTTACACAGTCTTGTGGCCTATATCGGTAA

mRNA sequence

AAATTAGACCTTTTTCCACTTCCCTCTCGGATTCAAAGCTCCAGGCTCCCACGGTTAATATTCAGCCGTCGCTCCCCACCCGATTTTCTCCTCAACCTTCCTCGAACTAGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAACTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTTGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGAATCAAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGACGCCCAGGGCCCTCCTCAGGAGCCTGTTTTGAAAGCAATTTCAGGTTTCTACCTTATCCTCATGCTAGGCTTCGGAATGGTAAGCAATGAATCAATTAATTTCAGGTATCACCTCTTCTTATACACAACTCTGTCTGTTCATTTCCTTGTGTGAGCTTCTAACTGTTCATGCTCATGTTTCTATTTCACAACGATTGTTCATCTACGCCACATAATTGATTACTTGTTCGTTCGATATTTAGTTCCTTTTAATGTTAATTTAAGTGCAGACAGACTATATCCACACCACACCACCCCAACTCATCACTGTTGCAATTTTCCTTTTAGTGTCTCTTTCTATTCTTTTAATTGACTATTGATTATTGATTATTTTGGTTGGAGTATGTGTCTGATTTTTGTAAGATCCTAAGATCCTGTGTTTGATACTTCAACATTGCTTAATTTTCTAGTGATACTTCAAGTTTTCTTTCGTATATTACTTCCACGTTATGTTATTATTGTTATCTGTAATGTGTGACTGAGATTTACTTAGAATGAAGATTAGCATTATTATATGATAGATTAAGCCTAATTAATTCATATATTTTTCAGTGCATCCATCTAACTTCCGGTGGTTCTTGTGTTTATGATCCTTGAGCTTGGTATGGGCTAGATCCATTTGATTTTAATGCTAATGGACTCAATTTGTGTGCCTGGGCTCATGTATATTAAAGTGGCACAGTTTGATTTGATTTTTCCCCAAAAATGGTGGAGTTTCTGTTGAGTACATGATCAGATGGTGAATTTAGTTTCAGCTGGGAAGGCCCAAGAGGAACAGGAAACAAAGTTCCGACTAGACTATACAACCTTAGAAGAATGCAGGCAGTATCCTCATGAGATCGCTTGAAATGCCCATGGCTATTGATTAGTTCATCCAGTTAAAGTAAAGCTCGAACTCTTAGCTTTAGATTTCAATGTATTTTCTTCTGCTTTTATCAAGTAATCTTGACTCTGTCACACACGCTACTGCTAAATTTCCAGTGTTTGGTCTGCTCCGCATACGCTCATGCAAGTATAGCTTCTCGGAAAGACAGCTCAAATGTCGGTAAGAAACAATCAACTTTCAGTTATACAAGCAAATATAGCTTCTTGGAAAGGCAGCTCAAATGTCGGTAAGAAACAATCAACCTTCAGTTATACTAGTTACACAGTCTTGTGGCCTATATCGGTAA

Coding sequence (CDS)

ATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAACTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTTGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGAATCAAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGACGCCCAGGGCCCTCCTCAGGAGCCTGTTTTGAAAGCAATTTCAGGTTTCTACCTTATCCTCATGCTAGGCTTCGGAATGGTAAGCAATGA

Protein sequence

MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVRIKKDSAITKYVAKRGHEGRPGPSSGACFESNFRFLPYPHARLRNGKQ

Homology

[Close]

BLAST of Carg19482 vs. NCBI nr
Match: KAG7015809.1 (Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.4 bits (1056), Expect = 4.9e-111
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVRIKKDSAITKYVA 180
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVRIKKDSAITKYVA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVRIKKDSAITKYVA 180

Query: 181 KRGHEGRPGPSSGACFESNFRFLPYPHARLRNGKQ 216
           KRGHEGRPGPSSGACFESNFRFLPYPHARLRNGKQ
Sbjct: 181 KRGHEGRPGPSSGACFESNFRFLPYPHARLRNGKQ 215

[Close]

BLAST of Carg19482 vs. NCBI nr
Match: KAG6577769.1 (Mediator of RNA polymerase II transcription subunit 10b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.9 bits (899), Expect = 7.8e-93
Identity = 196/246 (79.67%), Postives = 202/246 (82.11%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA-------------- 180
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA              
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQMLSAL 180

Query: 181 -----------VRIKKDSAITKYVAKRGHE---------GRPGPSSGACFESNFRFLPYP 213
                      +++K+      +  + G E         GRPGPSSGACFESNFRFLPYP
Sbjct: 181 IIREFVLILYPIKLKRPFQDRFFSLEIGFEVVAIHQLISGRPGPSSGACFESNFRFLPYP 240

[Close]

BLAST of Carg19482 vs. NCBI nr
Match: XP_022923485.1 (mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923486.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923487.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923488.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923489.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923491.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923492.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022965379.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965380.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965381.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965383.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965384.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965385.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965386.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_023553208.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553209.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553210.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553211.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553212.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.3 bits (791), Expect = 2.6e-80
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Carg19482 vs. NCBI nr
Match: KAA0052968.1 (mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa] >TYK11424.1 mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-79
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 167

[Close]

BLAST of Carg19482 vs. NCBI nr
Match: XP_016900643.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X2 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 6.4e-79
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA+
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAM 167

[Close]

BLAST of Carg19482 vs. ExPASy Swiss-Prot
Match: F4HPA7 (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-58
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 60
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAV 167

[Close]

BLAST of Carg19482 vs. ExPASy Swiss-Prot
Match: Q9FHZ2 (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-52
Identity = 117/167 (70.06%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLN- 120
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EV+NLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

[Close]

BLAST of Carg19482 vs. ExPASy Swiss-Prot
Match: Q16G71 (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 GN=MED10 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 39  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPL 64

Query: 99  EVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL++TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of Carg19482 vs. ExPASy Swiss-Prot
Match: Q7Q5R5 (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7165 GN=MED10 PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 42/123 (34.15%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 39  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPL 64

Query: 99  EVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL +TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of Carg19482 vs. ExPASy Swiss-Prot
Match: Q9CXU0 (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 GN=Med10 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 46  IQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC-TIQVPMEVVNLI 105
           ++K +  + QL + VS+F  + Q  L Q+LN +V  L ++ K  ++   I VP+EV   I
Sbjct: 12  LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query: 106 DDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIR 162
           D G+NP  +T++ L   +AKN+  KGK D  K  +  L++EL + FP+++  YR IR
Sbjct: 72  DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

[Close]

BLAST of Carg19482 vs. ExPASy TrEMBL
Match: A0A6J1HLJ2 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111465259 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.3e-80
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Carg19482 vs. ExPASy TrEMBL
Match: A0A6J1E6X8 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111431167 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.3e-80
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Carg19482 vs. ExPASy TrEMBL
Match: A0A5D3CJS3 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=MED10 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 167

[Close]

BLAST of Carg19482 vs. ExPASy TrEMBL
Match: A0A1S4DXE0 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.1e-79
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA+
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAM 167

[Close]

BLAST of Carg19482 vs. ExPASy TrEMBL
Match: A0A1S3BJY3 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.1e-79
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS STTVDDSKQNLNQVINSIQKTLGILHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120
           SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDVLNS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of Carg19482 vs. TAIR 10
Match: AT1G26665.2 (Mediator complex, subunit Med10 )

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-59
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 60
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAV 167

[Close]

BLAST of Carg19482 vs. TAIR 10
Match: AT1G26665.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 224.6 bits (571), Expect = 7.8e-59
Identity = 126/170 (74.12%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 60
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAA 166

[Close]

BLAST of Carg19482 vs. TAIR 10
Match: AT5G41910.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-53
Identity = 117/167 (70.06%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLN- 120
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EV+NLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

The following BLAST results are available for this feature:

BLAST of Carg19482 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015809.1	4.9e-111	100.00	Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma ...	[more]
KAG6577769.1	7.8e-93	79.67	Mediator of RNA polymerase II transcription subunit 10b, partial [Cucurbita argy...	[more]
XP_022923485.1	2.6e-80	100.00	mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata...	[more]
KAA0052968.1	2.9e-79	98.20	mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo...	[more]
XP_016900643.1	6.4e-79	97.60	PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X2 [C...	[more]

BLAST of Carg19482 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPA7	3.8e-58	74.27	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]
Q9FHZ2	3.1e-52	70.06	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
Q16G71	2.1e-16	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 ...	[more]
Q7Q5R5	4.7e-16	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7...	[more]
Q9CXU0	1.5e-14	36.75	Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 ...	[more]

BLAST of Carg19482 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLJ2	1.3e-80	100.00	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E6X8	1.3e-80	100.00	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=...	[more]
A0A5D3CJS3	1.4e-79	98.20	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. maku...	[more]
A0A1S4DXE0	3.1e-79	97.60	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3BJY3	4.1e-79	98.19	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]

BLAST of Carg19482 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26665.2	2.7e-59	74.27	Mediator complex, subunit Med10	[more]
AT1G26665.1	7.8e-59	74.12	Mediator complex, subunit Med10	[more]
AT5G41910.1	2.2e-53	70.06	Mediator complex, subunit Med10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019145	Mediator complex, subunit Med10	PFAM	PF09748	Med10	coord: 45..158 e-value: 8.7E-29 score: 100.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 1..169
None	No IPR available	PANTHER	PTHR13345:SF9	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19482-RA	Carg19482-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity