Carg19453 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19453
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 10055551 .. 10056713 (+)
RNA-Seq ExpressionCarg19453
SyntenyCarg19453
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCTCTTCTCTGATGCCTGCGCCATCATTTCTGAATCTGGACTCGGAAAGGGGTGTTGTATCTTAGTAGCTATTTCGTCAAAAAGATTGGCCGAGTTCATACTGTTTTAGTAGGGTTGAATTATCCTACTAGGAAGCCTCTTTTTTGAGGACGAGTGTTAATCTGAAGGAAGTAGGTTTATATAGTCAGAAAGAAATAGAAGGAAGAATACTAATGTCGACAAAATCAGAGGAGATGAATTTTGGTTTCCATACGACTTGGCTGGCGTTTTATATATATAATTGATGACGAGACAGCATAACACAGCGTAATGTAGTTATTTTTGTTCTTGTTGTGGTTCTTGAAACGCCCCCTCATGATCTGAAAAATCTCCAAGATTCTCTTATAGTTTTTCTAAACTTCATTGCAAGTCATAGCAACCTTTTGTATGTGATTTAAATGAGTGCTATTCTTTGTGATTTCTTCCTTCAGTATAAAATGGAACTGATTGTGTAGGTAGTTTGTAAATGTCAGGTCTTCAAGTCTCCTCCAGAACGGGAAGAGGCAAATAAACGACCGAACACACCGCGGCATGTTGCTCGGAATGGACACATTATATCATCTAGCCTTTCGCAAGCTTGTTTATTTTTTGCTTTGAAGAACTTGTGAAAGTATTACAAGCAAAAATTGATTCCCTTACAATTAGCGTCACACTTTCCATGTAGTTTTGTACCTTCCCATATAGAAAGTCATTATTTGAAGATACCTGTAACTTGTGTGATGAAGCTGAAACTCTTCTAAAAGTTATTCCCCCTTTTAGGCTAAATTGTAATGTATCTTTACAAGTTTAAATACTATTCTAGTCCCCTTCCATTCTCTAATGCTAGTGGATTTTGAACAAGTTTTAAATAATGATCTTCATGCTTGGATCTTTAGTTCATTTTAGTTCTCGAGTTTGATCATTTAGCCTGATATGCAATTCCATGCATTCCATAACACCTCACGATCGCACTCCACACGATAACGTTTTTGTCATTGTTTCGGTTGAAAACATCTCTTGCAATGTTCACACAACATCTGAGTCGAAAATCGATGAACAAGTTTCCTCTTGTCACTGTTCTTCATTGCGCCATAGCCGCCTTCAACACAAAGAAATGTGTAGCAATGGGTGGGTGTGA

mRNA sequence

ATGGATTTCTCTTCTCTGATGCCTGCGCCATCATTTCTGAATCTGGACTCGGAAAGGGGTGTTGTCTTCAAGTCTCCTCCAGAACGGGAAGAGGCAAATAAACGACCGAACACACCGCGGCATGTTGCTCGGAATGGACACATTATATCATCTAGCCTTTCGCAAGCTTGTTTATTTTTTGCTTTGAAGAACTTCCTGATATGCAATTCCATGCATTCCATAACACCTCACGATCGCACTCCACACGATAACGTTTTTGTCATTGTTTCGGTTGAAAACATCTCTTGCAATGTTCACACAACATCTGAGTCGAAAATCGATGAACAAGTTTCCTCTTGTCACTGTTCTTCATTGCGCCATAGCCGCCTTCAACACAAAGAAATGTGTAGCAATGGGTGGGTGTGA

Coding sequence (CDS)

ATGGATTTCTCTTCTCTGATGCCTGCGCCATCATTTCTGAATCTGGACTCGGAAAGGGGTGTTGTCTTCAAGTCTCCTCCAGAACGGGAAGAGGCAAATAAACGACCGAACACACCGCGGCATGTTGCTCGGAATGGACACATTATATCATCTAGCCTTTCGCAAGCTTGTTTATTTTTTGCTTTGAAGAACTTCCTGATATGCAATTCCATGCATTCCATAACACCTCACGATCGCACTCCACACGATAACGTTTTTGTCATTGTTTCGGTTGAAAACATCTCTTGCAATGTTCACACAACATCTGAGTCGAAAATCGATGAACAAGTTTCCTCTTGTCACTGTTCTTCATTGCGCCATAGCCGCCTTCAACACAAAGAAATGTGTAGCAATGGGTGGGTGTGA

Protein sequence

MDFSSLMPAPSFLNLDSERGVVFKSPPEREEANKRPNTPRHVARNGHIISSSLSQACLFFALKNFLICNSMHSITPHDRTPHDNVFVIVSVENISCNVHTTSESKIDEQVSSCHCSSLRHSRLQHKEMCSNGWV
Homology
[Close]
BLAST of Carg19453 vs. NCBI nr
Match: KAG7015838.1 (hypothetical protein SDJN02_23476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.6e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MDFSSLMPAPSFLNLDSERGVVFKSPPEREEANKRPNTPRHVARNGHIISSSLSQACLFF 60
           MDFSSLMPAPSFLNLDSERGVVFKSPPEREEANKRPNTPRHVARNGHIISSSLSQACLFF
Sbjct: 1   MDFSSLMPAPSFLNLDSERGVVFKSPPEREEANKRPNTPRHVARNGHIISSSLSQACLFF 60

Query: 61  ALKNFLICNSMHSITPHDRTPHDNVFVIVSVENISCNVHTTSESKIDEQVSSCHCSSLRH 120
           ALKNFLICNSMHSITPHDRTPHDNVFVIVSVENISCNVHTTSESKIDEQVSSCHCSSLRH
Sbjct: 61  ALKNFLICNSMHSITPHDRTPHDNVFVIVSVENISCNVHTTSESKIDEQVSSCHCSSLRH 120

Query: 121 SRLQHKEMCSNGWV 135
           SRLQHKEMCSNGWV
Sbjct: 121 SRLQHKEMCSNGWV 134

[Close]
BLAST of Carg19453 vs. NCBI nr
Match: KAG6577798.1 (DNA-directed RNA polymerase II subunit rpb1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 9    APSFLNLDSERGVVFKSPPEREEANKRPNTPRHVARNGHIISSSLSQACLFFALKN 65
            AP +    + +  VFKSPPEREE NKRPNTPRHVARNGHIISSSLSQACLFFALKN
Sbjct: 1824 APGYSPSSNSQEKVFKSPPEREEENKRPNTPRHVARNGHIISSSLSQACLFFALKN 1879

The following BLAST results are available for this feature:
BLAST of Carg19453 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015838.12.6e-70100.00hypothetical protein SDJN02_23476, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577798.11.2e-1478.57DNA-directed RNA polymerase II subunit rpb1, partial [Cucurbita argyrosperma sub... [more]
BLAST of Carg19453 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19453 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19453 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19453-RACarg19453-RAmRNA