Carg19446 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19446
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 10115228 .. 10118953 (-)
RNA-Seq ExpressionCarg19446
SyntenyCarg19446
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCACATTGCAGGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGGTCAGCTCATTTCTTGCTTTGAATTGTCTCCTTGTTTGGAATATAAAATTCAGGCTGCACAAATCTCACGTTTAGGAGCAAGTGCAATGCATATGCTGAAGCTTTTTTTTTATACTAAAATGAAAAGGAAACAGAAATTTAATGTTAAATTTTGTTTGCTTTCTCTTCAATCTTGTCGTGGGGCAAAGGATTGGCACCCATGTTTCGTATAGCCATGACAAGTGCTGATAGATTCTTCTTACAAATGGCATGTGGTTTTTGGTTCATTTATTTGATGAGTATGATTAGTTTGATCTAGATTATAATTATTAGTGAATTGGCAAGGACTGAAATAATTGTTCATGCAACTTAGAAAGGAAAATGAAATACCTAGCTAAGCCTAAAACATCACAATAAATATAGAAATTTGTGGTGGAAATAAGATTTCAATCGTAGTTAAAGAAAAGAACACTTTTGAGCGTTGTTTGGATTTTCAAGAGTTCTCCTGACATGAAATGAAAATTTGGAATTAAGTTATTTGTTAGTAAATAAAAAAGATCGTAGATAGCCGGATACAACCCGGAGGCAATGATGCTTAATTTCTTTGCATCAGATTGCGCGAAAAAAGATGGAAGGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCATGTACATCGCAGAACACTGAACATGTCCATTGCAAACAAGGCTCTCATGGATCTAACATGTGATCGTACAGTTCAAAAGGTACGCATTACAGAAACAATTAACAATCCTTTTTTGAAGTAACATCAAATTAGGAGATGCTTTAGCTCTAAAACTCAAAGCTATAAGAAAAAGAACTTAAGTATATACATATATATATTTTCATTGAAAAACTGAGTATCAAAAAAAGTTATTATTGAGTCTAGTTATGCCTGTGAACCGAACCATATGTTTCATTAGGTAGCCAAAAGCTTTACCCCAAATTCCGGGGGATTCTTCTAAAGTCGTCCTGCACATGCCCCCTCTAACTTCCAGGATGGCTTGACATCTATCTATCAAACATCAAGATTAAAGCACTCCTAAATCCACTCTAGTCTCGACCTTTCATGTGTTGTGGTTTGGTGATTGCAATTGCTAGCCTAAGCAATGTTCAAGTGTCTGTATTACTGCACGTGTGCTGTGTCGGCATCCTTGTAATTCTACTCCCCAATTACTCTCCATCTCCATCGTCCTACAGGTCTCTTCTCGTGTACATGGGTTTTCTTTTCCAATGAAAAGGAGTATTTAATAGCTTTTGCACGGCATGCTCCATCCACTTATAATGCGTCGTGTCGTGTCATTAGGTGATATATTATTTCATTCCATTGATTCCATATTATTCTGAAATATTTATATTATACTTTAATCAATTCCTAGAATACTAGACTCGCTCTTTTGCACACCATAAGATTGGATATATATAAGGGTTTTAGCCCGAAGGAGAAGAGGTTCCAGATCTAGTTCTGATTGTCATTGAGCGCTTCATTTTGATAATTAGAAAAATATTCTTTAGTAGTAAAATGTTTACGATTATTGAAAATTACCAAGTATCAAAGGGATCATAATCTCCAAATTACTATCTACTTTTGCCTTCCTACATTTCTTACAACTTCTTACGAATCATTCTTCATTAGAAGGGCTGTTGACCTACACAATCCAAGTTGTCTCCATATTGGATATTCAATATGTCACAATACCTTTTATAGAAACCAATCCTATCTGCAGCTCGATCATCGGTACCATTAACACATTCACTAACATTGATTAAGTTGATGGTTAGACCATAGCCAGGCAATCTTTTAGCTGATATATCTTCATTGGATGGTACCCATTTACCCGTCATAACATCATGACACGATGGTTTGTTTCCTTGAGGAGTCATCCAAAACCACAAGGCAGTCTTGAATGATATGGTTGGATTGGTAGCCACTAGATCAGGATTGTTTATCAGGTCCACCCCTATTGCCCTTCCAGCAGCCCCATAGTTGAAGTTACTAATCAACCAAAAGCCATCTTTCAATGATACAAATCTGAATATTTGGTTAAAACTAGAATTTCATCCAACTTACTAGGTGATTTGGAAGGGACCTCGCCCATAATATTGCTTCCCAGATGCACAAGGCCAGTTGGTAGAAGGACTACAAGAAGCATCTTTGATGGTTGAATCAATATAGCAATAGCCCCATGCATATGGTCCATCCGGTGCAGTTGGCCATCCTCCTATACAAATATTCCATTCCTTTTAACTTAACATTAACAATGAGGGCCTATTAAACACATTTAAAAATTAATAAATCAAACAAATACAACATCAACCATATAAGTTAATTGCTAAAATTTTATCAAATAGAATAAGAAAGGGTCTTAATTATGCCATGGATGATTTAGATTTAAAAAAGTGTCATTGTATTTTTTAAGTTTTAGAAATTTTAGAAAATTGTCAATGTTATTGTATTTTTAAGTTTTAGATAATTGTCTTTAACTTATAAGTCGTCGTTATGGTATTGATGAGTTATTATAACATTTATTTTCGAGACTATAAATAATCATTCATGTTATTGCTCTAACATCAATTTCTATGTTACCTTTGTTGATAACTAAGCTTTTACTTTACAAATTCTTGTATTTAGAACTTGCATGTTAGAGTCATTTTAGTGGCATTGATCAAAGTTGTAGAGTGATTCGAATCACGAGTTTAAAAACAAGTTTTTTCTACTCCCGATCTTAATCATCAAGGTAATCTATTCCAAAACTTTCTCTTGAGTTGATTCCATATCAAAATATTTCCAGGAACAATCTCGACCAATTGACCTAAAAACTTTGTATAATTAAGATTGTTTAACTCTATGGTGTCGTCGGGGATTGTATGAAAATATGTTTATCAGGAGAGCACGTAATTTGAAAGTAGGTCATATTTCATCTCGACCCAAACTTTTGGTCAATCCATCAAATTTCCTTCTAAGTTTTTCACAGTGAAGTAAAAAATAATAATAACAAATAAAAAATTGAACTTATAATTTAACAACAATTATAAGAGAAAATAGTCAGTAAATTCGAAGTGAATGATTATTAACCTGTGGTCTCGTGAGATGTTTGAGCGAGGAAAGCGGCGACCTCCCTCTTCCTGATGTTGAGATTCCCGGTGGTGCCAAAGCCGTCGAACGCCGCCGCCGCAACCGCAAAAGCCTCGTAGCTGTAAAATCCATTGCTCTTGCAACTCCGATCGTTTCGATGTTTTAGCATTTCGTCAAAATCCGAGGCGCTAATTACGCTGCCGATTTCGCCGATAGGGCTTCCAAATGTTAGATCAGAACCACATCGCTGCACAAATCCGGATCTGCAGAACCCCGACCCGGCGCTGCAGAGGCCTTTTGGACACATCGCGTTCTCTGGTTCTCCTCCGTCGCCGCCGCCGCACGGCTGCGCCCATGACGTCGCCGATGTGAAGAGAACGAAGGCTAGAGCTAGGAAAGAAGGGTAGATTTTTCTCATCGATCGCCGCTCCGCGATTTGTCTGTTGACTTATCCGATAACAATGATGCCGGTTTCGTTTCGAAGTATTGGGAAAAATGAAAGGCAACATCG

mRNA sequence

ATGGGGGCACATTGCAGGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGATTGCGCGAAAAAAGATGGAAGGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCATGTACATCGCAGAACACTGAACATGTCCATTGCAAACAAGGCTCTCATGGATCTAACATGTGATCGTACAGTTCAAAAGGTACGCATTACAGAAACAATTAACAATCCTTTTTTGAAGTAACATCAAATTAGGAGATGCTTTAGCTCTAAAACTCAAAGCTATAAGAAAAAGAACTTAAGTATATACATATATATATTTTCATTGAAAAACTGAGTATCAAAAAAAGTTATTATTGAGTCTAGTTATGCCTGTGAACCGAACCATATGTTTCATTAGGTAGCCAAAAGCTTTACCCCAAATTCCGGGGGATTCTTCTAAAGTCGTCCTGCACATGCCCCCTCTAACTTCCAGGATGGCTTGACATCTATCTATCAAACATCAAGATTAAAGCACTCCTAAATCCACTCTAGTCTCGACCTTTCATGTGTTGTGGTTTGGTGATTGCAATTGCTAGCCTAAGCAATGTTCAAGTGTCTGTATTACTGCACGTGTGCTGTGTCGGCATCCTTGTAATTCTACTCCCCAATTACTCTCCATCTCCATCGTCCTACAGGTCTCTTCTCGTGTACATGGGTTTTCTTTTCCAATGAAAAGGAGTATTTAATAGCTTTTGCACGGCATGCTCCATCCACTTATAATGCGTCGTGTCGTGTCATTAGGTGATATATTATTTCATTCCATTGATTCCATATTATTCTGAAATATTTATATTATACTTTAATCAATTCCTAGAATACTAGACTCGCTCTTTTGCACACCATAAGATTGGATATATATAAGGGTTTTAGCCCGAAGGAGAAGAGGTTCCAGATCTAGTTCTGATTGTCATTGAGCGCTTCATTTTGATAATTAGAAAAATATTCTTTAGTAGTAAAATGTTTACGATTATTGAAAATTACCAAGTATCAAAGGGATCATAATCTCCAAATTACTATCTACTTTTGCCTTCCTACATTTCTTACAACTTCTTACGAATCATTCTTCATTAGAAGGGCTGTTGACCTACACAATCCAAGTTGTCTCCATATTGGATATTCAATATGTCACAATACCTTTTATAGAAACCAATCCTATCTGCAGCTCGATCATCGGTACCATTAACACATTCACTAACATTGATTAAGTTGATGGTTAGACCATAGCCAGGCAATCTTTTAGCTGATATATCTTCATTGGATGGTACCCATTTACCCGTCATAACATCATGACACGATGGTTTGTTTCCTTGAGGAGTCATCCAAAACCACAAGGCAGTCTTGAATGATATGGTTGGATTGGTAGCCACTAGATCAGGATTGTTTATCAGGTCCACCCCTATTGCCCTTCCAGCAGCCCCATAGTTGAAGTTACTAATCAACCAAAAGCCATCTTTCAATGATACAAATCTGAATATTTGGTTAAAACTAGAATTTCATCCAACTTACTAGGTGATTTGGAAGGGACCTCGCCCATAATATTGCTTCCCAGATGCACAAGGCCAGTTGGTAGAAGGACTACAAGAAGCATCTTTGATGGTTGAATCAATATAGCAATAGCCCCATGCATATGGTCCATCCGGTGAATGATTATTAACCTGTGGTCTCGTGAGATGTTTGAGCGAGGAAAGCGGCGACCTCCCTCTTCCTGATGTTGAGATTCCCGGTGGTGCCAAAGCCGTCGAACGCCGCCGCCGCAACCGCAAAAGCCTCGTAGCTGTAAAATCCATTGCTCTTGCAACTCCGATCGTTTCGATGTTTTAGCATTTCGTCAAAATCCGAGGCGCTAATTACGCTGCCGATTTCGCCGATAGGGCTTCCAAATGTTAGATCAGAACCACATCGCTGCACAAATCCGGATCTGCAGAACCCCGACCCGGCGCTGCAGAGGCCTTTTGGACACATCGCGTTCTCTGGTTCTCCTCCGTCGCCGCCGCCGCACGGCTGCGCCCATGACGTCGCCGATGTGAAGAGAACGAAGGCTAGAGCTAGGAAAGAAGGGTAGATTTTTCTCATCGATCGCCGCTCCGCGATTTGTCTGTTGACTTATCCGATAACAATGATGCCGGTTTCGTTTCGAAGTATTGGGAAAAATGAAAGGCAACATCG

Coding sequence (CDS)

ATGGGGGCACATTGCAGGGAAGATAAGAGGGAGGAGACAGCGAGCGTTGGTTTCAATGAATGCAACTTGGAAGCAGGGAAATGGCCGGCGGGAGTGTCCTTTTCTTGCTCTAAAAACCGAGAAAGATTGCGCGAAAAAAGATGGAAGGGGAGAATCTTGGAGGCAAAAAAACAGAACATTAAAAAGGAGGCCATGTACATCGCAGAACACTGA

Protein sequence

MGAHCREDKREETASVGFNECNLEAGKWPAGVSFSCSKNRERLREKRWKGRILEAKKQNIKKEAMYIAEH
Homology
[Close]
BLAST of Carg19446 vs. NCBI nr
Match: KAG7015845.1 (hypothetical protein SDJN02_23483, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 9.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MGAHCREDKREETASVGFNECNLEAGKWPAGVSFSCSKNRERLREKRWKGRILEAKKQNI 60
          MGAHCREDKREETASVGFNECNLEAGKWPAGVSFSCSKNRERLREKRWKGRILEAKKQNI
Sbjct: 1  MGAHCREDKREETASVGFNECNLEAGKWPAGVSFSCSKNRERLREKRWKGRILEAKKQNI 60

Query: 61 KKEAMYIAEH 71
          KKEAMYIAEH
Sbjct: 61 KKEAMYIAEH 70

The following BLAST results are available for this feature:
BLAST of Carg19446 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015845.19.5e-32100.00hypothetical protein SDJN02_23483, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19446 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19446 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19446 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19446-RACarg19446-RAmRNA