Carg19443 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19443
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ganglioside-induced differentiation-associated protein 2-like
Location	Carg_Chr16: 10120719 .. 10122342 (-)
RNA-Seq Expression	Carg19443
Synteny	Carg19443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGGTTTCCTCTCTCTCTCTCTCTCTCATTCTTTATCGATGAAATTAATTTTTTGTCGTTTCTTTTGACCATTGAGTTTGAATGTGCTGAAATATCTGTATGTTTTCCTTACCATGATCTGTTTCTGTTTTCTTGCTTTTTTCATGGATGAAATTAAATTTTTCTCGTTGTCATCCGCGCGAACTGTACGTCTGAATGTGCTCAAGAAGCATCTGGAATTTTCCGTAATCTGCTCTGATTTGATTTTCTTGCTCTGGTCTGCTTTTATTTACTTTTTTTTTTTTTTTTTTTTTATCAGATTGAATTTTCGCAGAGAAGCGTATGTAGATTTGCCTTACTACGCTCTGATTCGGTTTTCTTGCTCTGTTCTATTTCTGTTTTTTTGTTCTTGACTGTGCTTAAGAAGTATCTGCATATTTGCACTGCTGTGCTCTGATTAAATTTCTAGCTGTTTTGAGCGATGAGATTGATGTTTCTTTTTTGAAAATCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGTATATTTTCTAACCCTTCTTCTTCAATCAATTTCAGGTTTTCCCTATATTCTTATTCCCATATTTTCTTTTTGCATCATAGAAAATAATGTAATTTTTATGAATAAGTAAATTAAAACATTTTTCTGTACTTTTGTAAATTAAGAAAAAAACTGATTTCATGCATATATTCTTTTTTAAAAACTATTTTTAATTTATTTCAAACATCTTAATTTATTAGATCCAATAACAAATATACTCTGAATTTTGAATTTAGTTTTGTTTTGTCCTCATCTTTTTTTCTAATATGTAATTGTATTTTTAAAATTTATAAATGTATTAGAAATAAAATTGAAAAGTTTAATTAAATATTTACATTTTTTTAATGCACTCGAAGACATTATTTTATACACCTTACCCAATAAAGGGATAATGATAAAAAAAGAAAATTAAAATATTAAAAAGGAAAAGTAGGAATAATTTTATGATGTTTTGTTGATAATATATTATGTTAATAGTTTATAATGAGAGGGAATGTTTGGATGTGGTAGGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

mRNA sequence

ATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

Coding sequence (CDS)

ATGGCCGCTCAGGTTCAGCCTCCTCCGCCGGAGCAAAACCAACTCGAAAACCTCGACGTCTTCAAGATTAAAGGCAGAGACAAACAAGGCCGCCGGATTCTCCGCATTACCGGAAAATTCTTTCCAGCACGGATTGTGAGTTTGGATGTGGTGAAGAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCACACCGACGTTCAAAGGAGCCAAAATTTCCCCGGAATCGCCGCCCTCCGATCAATCTATGAAGCAATTCCAGCCACCGTCAAGGCTAATCTCGAGGCCGTGTACTTCGTTCACCCAGACCTCCAGGCCAGGCTCTTCCTCGCCACACTCGGCCGCATTTTCTTCACTAGCGAGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

Protein sequence

MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAPSIDSHVYSMRCIS

Homology

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BLAST of Carg19443 vs. NCBI nr
Match: XP_022923521.1 (ganglioside-induced differentiation-associated protein 2-like [Cucurbita moschata] >XP_023007626.1 ganglioside-induced differentiation-associated protein 2-like [Cucurbita maxima] >KAG6577807.1 Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015847.1 Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 408.3 bits (1048), Expect = 3.8e-110
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPSIDSHVYSMRCIS
Sbjct: 181 HPRVYGAPSIDSHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. NCBI nr
Match: XP_023553442.1 (ganglioside-induced differentiation-associated protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.0 bits (1042), Expect = 1.9e-109
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKI 
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIL 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPSIDSHVYSMRCIS
Sbjct: 181 HPRVYGAPSIDSHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. NCBI nr
Match: XP_004146166.1 (ganglioside-induced differentiation-associated protein 2 [Cucumis sativus] >KGN55625.1 hypothetical protein Csa_010698 [Cucumis sativus])

HSP 1 Score: 386.0 bits (990), Expect = 2.0e-103
Identity = 186/201 (92.54%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAAHLPPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPS++SHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. NCBI nr
Match: XP_008448498.1 (PREDICTED: ganglioside-induced differentiation-associated protein 2 [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 7.8e-103
Identity = 185/201 (92.04%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAALLHPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFH+ VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHSGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPS++SHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. NCBI nr
Match: XP_038905989.1 (ganglioside-induced differentiation-associated protein 2 [Benincasa hispida])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 187/204 (91.67%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MAAQVQ---PPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEE 60
           MA Q+Q   PPPP+QN LE LDVFKIKGRDKQGRRILRITGKFFPARIVSLDV+KKHLEE
Sbjct: 1   MATQLQPQLPPPPDQNHLEKLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEE 60

Query: 61  KIFPRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQAR 120
           KIFPRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQAR
Sbjct: 61  KIFPRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQAR 120

Query: 121 LFLATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGL 180
           LFLATLGRIFFTSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGL
Sbjct: 121 LFLATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGL 180

Query: 181 ESDHPRVYGAPSIDSHVYSMRCIS 202
           ESDHPRVYGAPS++SHVYSMRCIS
Sbjct: 181 ESDHPRVYGAPSVESHVYSMRCIS 204

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BLAST of Carg19443 vs. ExPASy Swiss-Prot
Match: Q7JUR6 (Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 39/140 (27.86%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 447

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEMYGKIKYVSRIDL 144
            +  LR +Y  +P   K NL+A Y VHP    ++ +      F    +  K+  +  ++ 
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM-MTWWFTTFMAPAIKAKVHSLPGVEH 507

Query: 145 LWEHVRRNEIEVPEFIYDHD 165
           L+  + ++++E+P +I ++D
Sbjct: 508 LYSAITKDQLEIPAYITEYD 524

[Close]

BLAST of Carg19443 vs. ExPASy Swiss-Prot
Match: Q292F9 (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 39/140 (27.86%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 449

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEMYGKIKYVSRIDL 144
            +  LR +Y  +P   K NL+A Y VHP    ++ +      F    +  K+  +  ++ 
Sbjct: 450 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM-MTWWFTTFMAPAIKAKVHSLPGVEH 509

Query: 145 LWEHVRRNEIEVPEFIYDHD 165
           L+  + ++++E+P +I ++D
Sbjct: 510 LYSAITKDQLEIPAYITEYD 526

[Close]

BLAST of Carg19443 vs. ExPASy Swiss-Prot
Match: A7T167 (Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-09
Identity = 33/140 (23.57%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 25  GRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILYFHTDVQRSQNFP 84
           G D  GR ++    + F A+   L     +    +  R+ N+ + ++YFHT     +N P
Sbjct: 346 GVDFLGRPVVVFVARHFTAQNTDLGKAVAYF-ISVLDRIVNRDYVVVYFHTH-STEENQP 405

Query: 85  GIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEMYGKIKYVSRIDL 144
            ++ L+ +Y  +    + NL+A Y VHP + AR+ +      F  S +  K+ ++S +  
Sbjct: 406 PMSFLKELYHIVDNKYRRNLKAFYIVHPTVWARI-VTWFFTTFTASSVKEKVHFLSGVQY 465

Query: 145 LWEHVRRNEIEVPEFIYDHD 165
           L++ +  +++++P ++ ++D
Sbjct: 466 LYDWINPDQLDIPAYVLEYD 482

[Close]

BLAST of Carg19443 vs. ExPASy Swiss-Prot
Match: Q0IHU9 (Protein prune homolog 2 OS=Xenopus tropicalis OX=8364 GN=Prune2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-06
Identity = 32/100 (32.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 68  FTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIF 127
           + ++Y +    R +  PG+  ++  Y+ I   ++ NL++   VHP    R  LA L R F
Sbjct: 187 YMVVYLNGATPR-RKMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILA-LTRPF 246

Query: 128 FTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDL 168
            +S+   KIKYVS +  L E +    + +PE I   DE+L
Sbjct: 247 ISSKFSSKIKYVSTLAELSELIPMEYVHIPETIVKLDEEL 284

[Close]

BLAST of Carg19443 vs. ExPASy TrEMBL
Match: A0A6J1L134 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111500201 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.9e-110
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPSIDSHVYSMRCIS
Sbjct: 181 HPRVYGAPSIDSHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. ExPASy TrEMBL
Match: A0A6J1E710 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431194 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.9e-110
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF
Sbjct: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPSIDSHVYSMRCIS
Sbjct: 181 HPRVYGAPSIDSHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. ExPASy TrEMBL
Match: A0A0A0L0Z7 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.9e-104
Identity = 186/201 (92.54%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAAHLPPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPS++SHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. ExPASy TrEMBL
Match: A0A1S3BJ81 (ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103490659 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.8e-103
Identity = 185/201 (92.04%), Postives = 195/201 (97.01%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           MAA + PPPPEQN LE LDVFKIKGRDKQGRRILRITGKFFPAR+VSLDV+KKHLEEKIF
Sbjct: 1   MAALLHPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFH+ VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHSGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPS++SHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. ExPASy TrEMBL
Match: A0A6J1I6H6 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470075 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.8e-101
Identity = 182/201 (90.55%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           M+AQ+QPPPPEQNQLE  DVFKIKGRDKQ RRILRI GKFFPAR VSLDVVK HLEEKIF
Sbjct: 1   MSAQIQPPPPEQNQLEKFDVFKIKGRDKQCRRILRIVGKFFPARTVSLDVVKNHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQAR+FL
Sbjct: 61  PRLKNKRFTILYFHTSVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARVFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSE+YGK++YVSRI LLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYG ESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIGLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGQESD 180

Query: 181 HPRVYGAPSIDSHVYSMRCIS 202
           HPRVYGAPS++SHVYSMRCIS
Sbjct: 181 HPRVYGAPSMESHVYSMRCIS 201

[Close]

BLAST of Carg19443 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 282.0 bits (720), Expect = 3.9e-76
Identity = 134/203 (66.01%), Postives = 167/203 (82.27%), Query Frame = 0


Query: 1   MAAQVQPPPPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIF 60
           M++Q+     EQ  +E L++FKI GRDK+GR+ILRI GKFFPAR +SLDV+KK+LEEKIF
Sbjct: 1   MSSQISEIEQEQ-LIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 60

Query: 61  PRLKNKRFTILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFL 120
           PRL  K F +LY HT VQRS+NFPGI+ALR+IY+AIP  V+ NL+ VYF+HP LQ+RLFL
Sbjct: 61  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 120

Query: 121 ATLGRIFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           AT GR  F+  +YGK++Y+SR+D LWEHVRRNEIE+PEF+YDHD+DLEYRPMMDYG ESD
Sbjct: 121 ATCGRFLFSGGLYGKLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESD 180

Query: 181 HPRVYGAPSIDSHV--YSMRCIS 202
           H RV+   ++DS V  +SMRCIS
Sbjct: 181 HARVFAGAAVDSSVSSFSMRCIS 202

[Close]

BLAST of Carg19443 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.7e-44
Identity = 77/168 (45.83%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 13  NQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRFTILY 72
           + L+ L  F ++G D+ G RI RI GK+FPAR+VS + +KK++ +KI  +       ++Y
Sbjct: 47  SDLDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVY 106

Query: 73  FHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFFTSEM 132
            H+ VQ+  N PGI  LR IYE +P+ +K  L+ VYF+HP L++RL +ATLGR+  +  +
Sbjct: 107 MHSTVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGL 166

Query: 133 YGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 181
           Y KIKYVSR+  LWE +++ E+E+P+F+ +HD  LE+RP+ DYG+E D
Sbjct: 167 YWKIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPD 214

The following BLAST results are available for this feature:

BLAST of Carg19443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923521.1	3.8e-110	100.00	ganglioside-induced differentiation-associated protein 2-like [Cucurbita moschat...	[more]
XP_023553442.1	1.9e-109	99.50	ganglioside-induced differentiation-associated protein 2-like [Cucurbita pepo su...	[more]
XP_004146166.1	2.0e-103	92.54	ganglioside-induced differentiation-associated protein 2 [Cucumis sativus] >KGN5...	[more]
XP_008448498.1	7.8e-103	92.04	PREDICTED: ganglioside-induced differentiation-associated protein 2 [Cucumis mel...	[more]
XP_038905989.1	1.7e-102	91.67	ganglioside-induced differentiation-associated protein 2 [Benincasa hispida]	[more]

BLAST of Carg19443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7JUR6	2.9e-12	27.86	Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1	[more]
Q292F9	2.9e-12	27.86	Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15...	[more]
A7T167	5.2e-09	23.57	Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1	[more]
Q0IHU9	9.2e-06	32.00	Protein prune homolog 2 OS=Xenopus tropicalis OX=8364 GN=Prune2 PE=2 SV=1	[more]

BLAST of Carg19443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L134	1.9e-110	100.00	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]
A0A6J1E710	1.9e-110	100.00	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita mosch...	[more]
A0A0A0L0Z7	9.9e-104	92.54	CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 P...	[more]
A0A1S3BJ81	3.8e-103	92.04	ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656...	[more]
A0A6J1I6H6	7.8e-101	90.55	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]

BLAST of Carg19443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35750.1	3.9e-76	66.01	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]
AT3G10210.1	6.7e-44	45.83	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001251	CRAL-TRIO lipid binding domain	SMART	SM00516	sec14_4	coord: 14..163 e-value: 2.3E-11 score: 53.8
IPR001251	CRAL-TRIO lipid binding domain	PFAM	PF13716	CRAL_TRIO_2	coord: 30..166 e-value: 1.3E-27 score: 96.7
IPR001251	CRAL-TRIO lipid binding domain	CDD	cd00170	SEC14	coord: 25..157 e-value: 2.305E-10 score: 54.6986
IPR036865	CRAL-TRIO lipid binding domain superfamily	GENE3D	3.40.525.10		coord: 13..168 e-value: 9.9E-26 score: 92.1
IPR036865	CRAL-TRIO lipid binding domain superfamily	SUPERFAMILY	52087	CRAL/TRIO domain	coord: 20..154
None	No IPR available	PANTHER	PTHR11106:SF103	OS04G0561200 PROTEIN	coord: 10..201
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 10..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19443-RA	Carg19443-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane