Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA
mRNA sequence
ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA
Coding sequence (CDS)
ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA
Protein sequence
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKTFLH
Homology
BLAST of Carg19403 vs. NCBI nr
Match:
KAG7011714.1 (hypothetical protein SDJN02_26620, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 364.8 bits (935), Expect = 4.4e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT
Sbjct: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
Query: 181 FLH 184
FLH
Sbjct: 181 FLH 183
BLAST of Carg19403 vs. NCBI nr
Match:
KAG6572048.1 (Transcription factor basic helix-loop-helix 63, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 334.0 bits (855), Expect = 8.4e-88
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 167
BLAST of Carg19403 vs. NCBI nr
Match:
XP_022953115.1 (transcription factor bHLH78-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 325.1 bits (832), Expect = 3.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120
Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
BLAST of Carg19403 vs. NCBI nr
Match:
XP_022953116.1 (transcription factor HBI1-like isoform X2 [Cucurbita moschata])
HSP 1 Score: 325.1 bits (832), Expect = 3.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120
Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
BLAST of Carg19403 vs. NCBI nr
Match:
XP_022975196.1 (transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcription factor bHLH63-like [Cucurbita maxima] >XP_022975324.1 transcription factor bHLH63-like [Cucurbita maxima])
HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 158/180 (87.78%), Postives = 158/180 (87.78%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
TSSCPPAVTPAVSAA RESFKKRKAEKVHTT AAPTNN N KT
Sbjct: 121 TSSCPPAVTPAVSAAGRESFKKRKAEKVHTT-------AAPTNNNKNKVDKNSKEKRIKT 173
BLAST of Carg19403 vs. ExPASy TrEMBL
Match:
A0A6J1GNS0 (transcription factor bHLH78-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455615 PE=4 SV=1)
HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120
Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
BLAST of Carg19403 vs. ExPASy TrEMBL
Match:
A0A6J1GM38 (transcription factor HBI1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455615 PE=4 SV=1)
HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120
Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
BLAST of Carg19403 vs. ExPASy TrEMBL
Match:
A0A6J1IK51 (transcription factor bHLH63-like OS=Cucurbita maxima OX=3661 GN=LOC111474481 PE=4 SV=1)
HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 158/180 (87.78%), Postives = 158/180 (87.78%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
Query: 61 PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61 PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
TSSCPPAVTPAVSAA RESFKKRKAEKVHTT AAPTNN N KT
Sbjct: 121 TSSCPPAVTPAVSAAGRESFKKRKAEKVHTT-------AAPTNNNKNKVDKNSKEKRIKT 173
BLAST of Carg19403 vs. ExPASy TrEMBL
Match:
A0A5D3DFI8 (Transcription factor bHLH49-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00200 PE=4 SV=1)
HSP 1 Score: 226.5 bits (576), Expect = 9.1e-56
Identity = 129/188 (68.62%), Postives = 138/188 (73.40%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q QSCFNR DYGGGFPP
Sbjct: 2 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 61
Query: 61 PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
P VP DHLTGFP +MS GGG GGG++ VEMVMGAVKPDPGL GKFDPSLLLNA
Sbjct: 62 PVSVPVDHLTGFPGYMSGGGGGGGGLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 121
Query: 121 TAYELNSSLSRTSSCPPAVTPAV-----SAARRESFKKRKAEKVHTTTTTTTA--AAAPT 171
TA ELNSSLSRTSSC P V P S A RESFKKRKAEK H TTTT + A T
Sbjct: 122 TACELNSSLSRTSSCLPVVAPTAAEKMGSVAGRESFKKRKAEKAHNTTTTNNSNNKATDT 181
BLAST of Carg19403 vs. ExPASy TrEMBL
Match:
A0A1S3BJH6 (transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV=1)
HSP 1 Score: 224.6 bits (571), Expect = 3.5e-55
Identity = 130/191 (68.06%), Postives = 136/191 (71.20%), Query Frame = 0
Query: 1 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233
Query: 61 PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
P VP DHLTGFP +MS GGG GGG++ VEMVMGAVKPDPGL GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSGGGGGGGGLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293
Query: 121 TAYELNSSLSRTSSCPPAVTPAV-----SAARRESFKKRKAEKVHTTTTTTTAAAAPTNN 176
TA ELNSSLSRTSSC P V P S A RESFKKRKAEK H TTTT +NN
Sbjct: 294 TACELNSSLSRTSSCLPVVAPTAAEKMGSVAGRESFKKRKAEKAHNTTTTNN-----SNN 353
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7011714.1 | 4.4e-97 | 100.00 | hypothetical protein SDJN02_26620, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6572048.1 | 8.4e-88 | 100.00 | Transcription factor basic helix-loop-helix 63, partial [Cucurbita argyrosperma ... | [more] |
XP_022953115.1 | 3.9e-85 | 98.21 | transcription factor bHLH78-like isoform X1 [Cucurbita moschata] | [more] |
XP_022953116.1 | 3.9e-85 | 98.21 | transcription factor HBI1-like isoform X2 [Cucurbita moschata] | [more] |
XP_022975196.1 | 3.2e-79 | 87.78 | transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcriptio... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GNS0 | 1.9e-85 | 98.21 | transcription factor bHLH78-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
A0A6J1GM38 | 1.9e-85 | 98.21 | transcription factor HBI1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... | [more] |
A0A6J1IK51 | 1.5e-79 | 87.78 | transcription factor bHLH63-like OS=Cucurbita maxima OX=3661 GN=LOC111474481 PE=... | [more] |
A0A5D3DFI8 | 9.1e-56 | 68.62 | Transcription factor bHLH49-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3BJH6 | 3.5e-55 | 68.06 | transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |