Carg19403 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19403
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor bHLH63-like
LocationCarg_Chr19: 6820179 .. 6820730 (+)
RNA-Seq ExpressionCarg19403
SyntenyCarg19403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

mRNA sequence

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Coding sequence (CDS)

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Protein sequence

MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKTFLH
Homology
BLAST of Carg19403 vs. NCBI nr
Match: KAG7011714.1 (hypothetical protein SDJN02_26620, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.8 bits (935), Expect = 4.4e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
           TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT
Sbjct: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180

Query: 181 FLH 184
           FLH
Sbjct: 181 FLH 183

BLAST of Carg19403 vs. NCBI nr
Match: KAG6572048.1 (Transcription factor basic helix-loop-helix 63, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.0 bits (855), Expect = 8.4e-88
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
           TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 167

BLAST of Carg19403 vs. NCBI nr
Match: XP_022953115.1 (transcription factor bHLH78-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 3.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
           RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168

BLAST of Carg19403 vs. NCBI nr
Match: XP_022953116.1 (transcription factor HBI1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 3.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
           RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168

BLAST of Carg19403 vs. NCBI nr
Match: XP_022975196.1 (transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcription factor bHLH63-like [Cucurbita maxima] >XP_022975324.1 transcription factor bHLH63-like [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 158/180 (87.78%), Postives = 158/180 (87.78%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
           TSSCPPAVTPAVSAA RESFKKRKAEKVHTT       AAPTNN       N      KT
Sbjct: 121 TSSCPPAVTPAVSAAGRESFKKRKAEKVHTT-------AAPTNNNKNKVDKNSKEKRIKT 173

BLAST of Carg19403 vs. ExPASy TrEMBL
Match: A0A6J1GNS0 (transcription factor bHLH78-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455615 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
           RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168

BLAST of Carg19403 vs. ExPASy TrEMBL
Match: A0A6J1GM38 (transcription factor HBI1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455615 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168
           RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK
Sbjct: 121 RTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNK 168

BLAST of Carg19403 vs. ExPASy TrEMBL
Match: A0A6J1IK51 (transcription factor bHLH63-like OS=Cucurbita maxima OX=3661 GN=LOC111474481 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 158/180 (87.78%), Postives = 158/180 (87.78%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKT 180
           TSSCPPAVTPAVSAA RESFKKRKAEKVHTT       AAPTNN       N      KT
Sbjct: 121 TSSCPPAVTPAVSAAGRESFKKRKAEKVHTT-------AAPTNNNKNKVDKNSKEKRIKT 173

BLAST of Carg19403 vs. ExPASy TrEMBL
Match: A0A5D3DFI8 (Transcription factor bHLH49-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00200 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 9.1e-56
Identity = 129/188 (68.62%), Postives = 138/188 (73.40%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 2   MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 61

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS GGG GGG++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 62  PVSVPVDHLTGFPGYMSGGGGGGGGLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 121

Query: 121 TAYELNSSLSRTSSCPPAVTPAV-----SAARRESFKKRKAEKVHTTTTTTTA--AAAPT 171
           TA ELNSSLSRTSSC P V P       S A RESFKKRKAEK H TTTT  +   A  T
Sbjct: 122 TACELNSSLSRTSSCLPVVAPTAAEKMGSVAGRESFKKRKAEKAHNTTTTNNSNNKATDT 181

BLAST of Carg19403 vs. ExPASy TrEMBL
Match: A0A1S3BJH6 (transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.5e-55
Identity = 130/191 (68.06%), Postives = 136/191 (71.20%), Query Frame = 0

Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS GGG GGG++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSGGGGGGGGLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293

Query: 121 TAYELNSSLSRTSSCPPAVTPAV-----SAARRESFKKRKAEKVHTTTTTTTAAAAPTNN 176
           TA ELNSSLSRTSSC P V P       S A RESFKKRKAEK H TTTT       +NN
Sbjct: 294 TACELNSSLSRTSSCLPVVAPTAAEKMGSVAGRESFKKRKAEKAHNTTTTNN-----SNN 353

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7011714.14.4e-97100.00hypothetical protein SDJN02_26620, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572048.18.4e-88100.00Transcription factor basic helix-loop-helix 63, partial [Cucurbita argyrosperma ... [more]
XP_022953115.13.9e-8598.21transcription factor bHLH78-like isoform X1 [Cucurbita moschata][more]
XP_022953116.13.9e-8598.21transcription factor HBI1-like isoform X2 [Cucurbita moschata][more]
XP_022975196.13.2e-7987.78transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcriptio... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GNS01.9e-8598.21transcription factor bHLH78-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1GM381.9e-8598.21transcription factor HBI1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1IK511.5e-7987.78transcription factor bHLH63-like OS=Cucurbita maxima OX=3661 GN=LOC111474481 PE=... [more]
A0A5D3DFI89.1e-5668.62Transcription factor bHLH49-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3BJH63.5e-5568.06transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19403-RACarg19403-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity