Carg19382 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19382
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 6942495 .. 6944303 (+)
RNA-Seq ExpressionCarg19382
SyntenyCarg19382
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTGATCTGTTCTTGTATCTATCTCTTAGGATGAATGAAAAATAGTGTTGGACGAAGATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTCCGTAGTACAAAGGACGGTGGAGGTAACGAGTTCGTCTCATTTTTTGCTCTGTTTTCTCTATGAAATTGTCAATATGATGTTTTGGATTGCATTATTCTAGGATCGGTCTTTCGAAAAAGAAAACTTCAATTGGCGGATGAGGCCAACTGTTGTTATGATGATCAAGTTTAATGGCGATGTTATGGATTAGATTTCTTGTTTGTTTTTTATACCGATAAAAAACAATAGTTCATGATAGAACCTTTAATGGTTAAAAGACAGTCTTAGTTTCAATTTTTATAAAACAAATAGTTTAATCTATGAAGTTTTAGTGGTTAAGGATTTAGTTTATTTACTTTTAAAATTAAAATAATTTATTGTATTATATTATGAAAATATTGTTAAGTTTTTTTAAAAAATTAGGTGATTGAAACACAAAGTATAAAGATTAAGCGATTTTGTAAATAAATAAAAAAAAAAAGAAAAAAGAAAAAAAGTTAGGCACAAGAAAGTAAGACTAAATTATTACTCATTAAACTTTTGAAATTACATGGTTATAAATTTGAAATTGGGAGATTAAATGACTTCCAACAAGAATGAAATATTGTTTCTGGTTGAAGACCAAAAATATTTTTTAAGGCATAATGCAATAAACAACCAAGTGAGAAATGGATAAAATAATAACATGGAATTAGGTAAGTCATATATTTCATCATACACATAAAAAAGATTTAAATAGCTTCATGAATGGACCTACTGTGGAATGGATTTCAACCTCAACTATTTAAAGATGATTTTGAAACAGTTTTTGGTGTTTTTGAAAGGAATTAGTCTCTAAATGATATGCAAGAATCACAAAATAAAGAAATAAAGATTTTTCATCATTTTTGTGATTGGTAATCTAGTCTAAAACTTTTTGCCAACTCTTTTGAATATATGCAGATATTTGTTTGTATGTCCACTAATTCTCACTTACATTTTGTTAATTTGAATCATCAATTAGGTAAAAATGGAACGAGGACTAAATATGCAAGGCTAGCTTCCAAGTGACTCAAGACAATCACAGTTAGTATTTGCCATCTTTCTTTACTACCTATCACTAACTGTTTCTGAAGACATATTCAAAGGTTTCAAATTCTATTGAATTTTATTGTTTTTTTTTTTGTTATTAAATTCTTAAAAGGTTTGTTGTAGCTTTTCAAAATGATTTAATTTTTCTTTTGAACATAATACTAAGTTGGAAATTTTGACATGGATTATATATATAATTTCACACACTTCTTATGTGAAGTGTAGCAGGTTTATCAAATAAATTAATGGTCAAATAAATTTTTTCTCTCTCAAGTTTGAGGCGTGCTATTTTTTCTGAGAGGCTTAAAAAACTCCTAAGTTGGGACTAGCTGATCCTTAATTGACGGAAAAATGGTATCTATGTGACAAAATATATTAATTTTAGATTTTCTTAGGGTGATTGTCCTGAGACAAGGCTAGACGAGGGAACATTTCTTCCTCTCTCTCTCTTTATCTCTCCATTTCTCTCATCTCCACCTCTCCGGCGAATCTCGCCACTGCCGCCGCCGCCCTTCATTCTTCCTCATAATCCCTTGGCGCTTCCTGCTTCCCTTCAGTGGTCGGCGCCGTCAAGACTGCCAGATATGGAGGGAAACTCTGTTGTTGCCATTATGGCTTCCAGATCTGGAACATAG

mRNA sequence

TTATTGATCTGTTCTTGTATCTATCTCTTAGGATGAATGAAAAATAGTGTTGGACGAAGATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTCCGTAGTACAAAGGACGGTGGAGGATCGGTCTTTCGAAAAAGAAAACTTCAATTGGCGGATGAGGCCAACTGTTGTTATGATGATCAAGTTTAATGGCGATGGTGATTGTCCTGAGACAAGGCTAGACGAGGGAACATTTCTTCCTCTCTCTCTCTTTATCTCTCCATTTCTCTCATCTCCACCTCTCCGGCGAATCTCGCCACTGCCGCCGCCGCCCTTCATTCTTCCTCATAATCCCTTGGCGCTTCCTGCTTCCCTTCAGTGGTCGGCGCCGTCAAGACTGCCAGATATGGAGGGAAACTCTGTTGTTGCCATTATGGCTTCCAGATCTGGAACATAG

Coding sequence (CDS)

ATGCACAGAGGTTTCTTCGAAGAGCTTGGATTTATCTCTCTCGAGATTCTTCGATCGGAAACTTCCGTAGTACAAAGGACGGTGGAGGATCGGTCTTTCGAAAAAGAAAACTTCAATTGGCGGATGAGGCCAACTGTTGTTATGATGATCAAGTTTAATGGCGATGGTGATTGTCCTGAGACAAGGCTAGACGAGGGAACATTTCTTCCTCTCTCTCTCTTTATCTCTCCATTTCTCTCATCTCCACCTCTCCGGCGAATCTCGCCACTGCCGCCGCCGCCCTTCATTCTTCCTCATAATCCCTTGGCGCTTCCTGCTTCCCTTCAGTGGTCGGCGCCGTCAAGACTGCCAGATATGGAGGGAAACTCTGTTGTTGCCATTATGGCTTCCAGATCTGGAACATAG

Protein sequence

MHRGFFEELGFISLEILRSETSVVQRTVEDRSFEKENFNWRMRPTVVMMIKFNGDGDCPETRLDEGTFLPLSLFISPFLSSPPLRRISPLPPPPFILPHNPLALPASLQWSAPSRLPDMEGNSVVAIMASRSGT
Homology
[Close]
BLAST of Carg19382 vs. NCBI nr
Match: KAG7011735.1 (hypothetical protein SDJN02_26641 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MHRGFFEELGFISLEILRSETSVVQRTVEDRSFEKENFNWRMRPTVVMMIKFNGDGDCPE 60
           MHRGFFEELGFISLEILRSETSVVQRTVEDRSFEKENFNWRMRPTVVMMIKFNGDGDCPE
Sbjct: 1   MHRGFFEELGFISLEILRSETSVVQRTVEDRSFEKENFNWRMRPTVVMMIKFNGDGDCPE 60

Query: 61  TRLDEGTFLPLSLFISPFLSSPPLRRISPLPPPPFILPHNPLALPASLQWSAPSRLPDME 120
           TRLDEGTFLPLSLFISPFLSSPPLRRISPLPPPPFILPHNPLALPASLQWSAPSRLPDME
Sbjct: 61  TRLDEGTFLPLSLFISPFLSSPPLRRISPLPPPPFILPHNPLALPASLQWSAPSRLPDME 120

Query: 121 GNSVVAIMASRSGT 135
           GNSVVAIMASRSGT
Sbjct: 121 GNSVVAIMASRSGT 134

The following BLAST results are available for this feature:
BLAST of Carg19382 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011735.11.3e-69100.00hypothetical protein SDJN02_26641 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg19382 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19382 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19382 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19382-RACarg19382-RAmRNA