Carg19374 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19374
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin-responsive protein
Location	Carg_Chr19: 7010332 .. 7010754 (-)
RNA-Seq Expression	Carg19374
Synteny	Carg19374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGCACCCCATGGCCATGGCTCCCACCATTCCTCATCTCTCTCTCAGTACAACTTCCGTGCTCTCTCAATAAATACCTCTCCTTCCACTCCCAATCCCTTTCCAAATTTCCCCGCAATGCCGATTCCCAAGCCCGCCGCTCTCAAGCACATTGTCAAGCGCTGCTCCAGCTTAGGCCGGAAGCAAGACGCCGCCGCTACCGCCACCGCCTACGACGGCGTTCCCAAGGGACATTTCGCCGTCTACGTCGGCGAGAATCGGAGCCGATATGTCGTCCCCATTTCCCTCTTGACTCACCCCGATTTTCAGTGTCTCCTCCGCCTCGCGGAGGAGGAATTCGGCTTCCACCACCATATGGGCCTCACTATTCCTTGTGAAGAGGTGGTTTTCCGCTCACTCACCGCCGCTCTCAAATGA

mRNA sequence

ATGGCGACGGCACCCCATGGCCATGGCTCCCACCATTCCTCATCTCTCTCTCAGTACAACTTCCGTGCTCTCTCAATAAATACCTCTCCTTCCACTCCCAATCCCTTTCCAAATTTCCCCGCAATGCCGATTCCCAAGCCCGCCGCTCTCAAGCACATTGTCAAGCGCTGCTCCAGCTTAGGCCGGAAGCAAGACGCCGCCGCTACCGCCACCGCCTACGACGGCGTTCCCAAGGGACATTTCGCCGTCTACGTCGGCGAGAATCGGAGCCGATATGTCGTCCCCATTTCCCTCTTGACTCACCCCGATTTTCAGTGTCTCCTCCGCCTCGCGGAGGAGGAATTCGGCTTCCACCACCATATGGGCCTCACTATTCCTTGTGAAGAGGTGGTTTTCCGCTCACTCACCGCCGCTCTCAAATGA

Coding sequence (CDS)

ATGGCGACGGCACCCCATGGCCATGGCTCCCACCATTCCTCATCTCTCTCTCAGTACAACTTCCGTGCTCTCTCAATAAATACCTCTCCTTCCACTCCCAATCCCTTTCCAAATTTCCCCGCAATGCCGATTCCCAAGCCCGCCGCTCTCAAGCACATTGTCAAGCGCTGCTCCAGCTTAGGCCGGAAGCAAGACGCCGCCGCTACCGCCACCGCCTACGACGGCGTTCCCAAGGGACATTTCGCCGTCTACGTCGGCGAGAATCGGAGCCGATATGTCGTCCCCATTTCCCTCTTGACTCACCCCGATTTTCAGTGTCTCCTCCGCCTCGCGGAGGAGGAATTCGGCTTCCACCACCATATGGGCCTCACTATTCCTTGTGAAGAGGTGGTTTTCCGCTCACTCACCGCCGCTCTCAAATGA

Protein sequence

MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK

Homology

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BLAST of Carg19374 vs. NCBI nr
Match: KAG7011743.1 (Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL 60
           MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL
Sbjct: 1   MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL 60

Query: 61  GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH 120
           GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH
Sbjct: 61  GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH 120

Query: 121 MGLTIPCEEVVFRSLTAALK 141
           MGLTIPCEEVVFRSLTAALK
Sbjct: 121 MGLTIPCEEVVFRSLTAALK 140

[Close]

BLAST of Carg19374 vs. NCBI nr
Match: KAG6572079.1 (Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL 60
           MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL
Sbjct: 8   MATAPHGHGSHHSSSLSQYNFRALSINTSPSTPNPFPNFPAMPIPKPAALKHIVKRCSSL 67

Query: 61  GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH 120
           GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH
Sbjct: 68  GRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHH 127

Query: 121 MGLTIPCEEVVFRSLTAALK 141
           MGLTIPCEEVVFRSLTAALK
Sbjct: 128 MGLTIPCEEVVFRSLTAALK 147

[Close]

BLAST of Carg19374 vs. NCBI nr
Match: XP_022952665.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH
Sbjct: 1   MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. NCBI nr
Match: XP_022969389.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima] >XP_022975693.1 auxin-responsive protein SAUR50-like [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 4.5e-49
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           MPIPKPAALKHIVKRCSSLGRKQDA ATATAYDGVPKGHFAVYVG+NRSRYVVPISLLTH
Sbjct: 1   MPIPKPAALKHIVKRCSSLGRKQDATATATAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. NCBI nr
Match: XP_023554806.1 (auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 7.7e-49
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           MPIPKPAALKHIVKRCSSLGRKQDAAAT TAYDGVPKGHFAVYVGE+RSRYVVPISLLTH
Sbjct: 1   MPIPKPAALKHIVKRCSSLGRKQDAAATTTAYDGVPKGHFAVYVGEHRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-28
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 44  IPKPAALKHIVKRCSSLGRKQDAAATATAYD-GVPKGHFAVYVGENRSRYVVPISLLTHP 103
           + + A LK I+KRCSSLG+K             VPKGHF VYVGENRSRY+VPIS LTHP
Sbjct: 10  LTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHP 69

Query: 104 DFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           +FQ LL+ AEEEFGF H MGLTIPC+E+VF++LT+ ++
Sbjct: 70  EFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

[Close]

BLAST of Carg19374 vs. ExPASy Swiss-Prot
Match: Q9SL45 (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-25
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 48  AALKHIVKRCSSLGRKQDAAATATAYD-----GVPKGHFAVYVGENRSRYVVPISLLTHP 107
           A++K IVKRCSSL + ++        +      VPKGHF VYVG NRSRY+VPIS L H 
Sbjct: 15  ASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHS 74

Query: 108 DFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           +FQ LLRLAEEEFGF H MGLTIPC+EV FRSL +  +
Sbjct: 75  EFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISMFR 112

[Close]

BLAST of Carg19374 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-23
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 49  ALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLL 108
           A+K I+K+CSS G+  D +      + VPKGHF VYVGE R+RY+VPIS L HP FQ LL
Sbjct: 15  AIKKIIKKCSSFGKNNDDSGLP---NDVPKGHFVVYVGERRNRYIVPISCLDHPTFQDLL 74

Query: 109 RLAEEEFGFHHHMGLTIPCEEVVFRS 135
           + +EEEFGF+H MG+ IPC+EV F S
Sbjct: 75  QRSEEEFGFNHDMGIIIPCQEVDFLS 97

[Close]

BLAST of Carg19374 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-15
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 62  RKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHHM 121
           RK   AA A      PKG+ AVYVGE   R+V+P+S L  P FQ LL  AEEEFG+ H M
Sbjct: 9   RKASKAADA------PKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPM 68

Query: 122 -GLTIPCEEVVFRSLTAAL 140
            GLTIPC E VF+ +T+ L
Sbjct: 69  GGLTIPCSEDVFQCITSCL 81

[Close]

BLAST of Carg19374 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 68  ATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPDFQCLLRLAEEEFGFHH-HMGLTIP 127
           A++ A D V KG+ AVYVGE   R+V+P+S L  P FQ LL  AEEEFG+HH + GLTIP
Sbjct: 18  ASSKAVD-VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIP 77

Query: 128 CEEVVFRSLTAAL 140
           C E VF+ +T+ L
Sbjct: 78  CSEDVFQHITSFL 89

[Close]

BLAST of Carg19374 vs. ExPASy TrEMBL
Match: A0A6J1GME7 (auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC111455291 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.4e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH
Sbjct: 1   MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. ExPASy TrEMBL
Match: A0A6J1I2G2 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111468411 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           MPIPKPAALKHIVKRCSSLGRKQDA ATATAYDGVPKGHFAVYVG+NRSRYVVPISLLTH
Sbjct: 1   MPIPKPAALKHIVKRCSSLGRKQDATATATAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. ExPASy TrEMBL
Match: A0A0A0K5S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G008430 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.8e-44
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           M IPKP ALK IVKRCSSLGRKQD  AT  AYDGVPKGHFAVYVG+NRSRYVVPISLLTH
Sbjct: 1   MAIPKPTALKQIVKRCSSLGRKQDPTATPPAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGF HHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFRHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. ExPASy TrEMBL
Match: A0A1S3BJD0 (auxin-induced protein 15A OS=Cucumis melo OX=3656 GN=LOC103490328 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.4e-43
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 42  MPIPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTH 101
           M IPKP +LK IVKRCSSLGRKQD  +T  AYDGVPKGHFAVYVG+NRSRYVVPISLLTH
Sbjct: 1   MAIPKPTSLKQIVKRCSSLGRKQDPTSTPPAYDGVPKGHFAVYVGQNRSRYVVPISLLTH 60

Query: 102 PDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PDFQCLLRLAEEEFGF HHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PDFQCLLRLAEEEFGFRHHMGLTIPCEEVVFRSLTAALK 99

[Close]

BLAST of Carg19374 vs. ExPASy TrEMBL
Match: A0A6J1JNJ6 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111486307 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.7e-41
Identity = 91/106 (85.85%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 42  MPIPKP----AALKHIVKRCSSLGRKQDAAATATA---YDGVPKGHFAVYVGENRSRYVV 101
           M I KP    AALK IVKRCSSLGRKQ+AA  ATA   +D VPKGHFAVYVGENRSRYVV
Sbjct: 1   MAIRKPAIHTAALKQIVKRCSSLGRKQEAAVAATATAGFDDVPKGHFAVYVGENRSRYVV 60

Query: 102 PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK
Sbjct: 61  PISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 106

[Close]

BLAST of Carg19374 vs. TAIR 10
Match: AT1G75580.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29
Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 41  AMPIPKPAALKHIVKRCSSLGRKQDAAATATAYD---GVPKGHFAVYVGENRSRYVVPIS 100
           A  + + A +K I+KRCSSLG+KQ              VPKGHF VYVGENR RYVVPIS
Sbjct: 6   ANKLTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRYVVPIS 65

Query: 101 LLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
            LT P+FQ LL+ AEEEFGF H MGLTIPCEEVVFRSLT+ L+
Sbjct: 66  FLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

[Close]

BLAST of Carg19374 vs. TAIR 10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-29
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 44  IPKPAALKHIVKRCSSLGRKQDAAATATAYD-GVPKGHFAVYVGENRSRYVVPISLLTHP 103
           + + A LK I+KRCSSLG+K             VPKGHF VYVGENRSRY+VPIS LTHP
Sbjct: 10  LTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISFLTHP 69

Query: 104 DFQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           +FQ LL+ AEEEFGF H MGLTIPC+E+VF++LT+ ++
Sbjct: 70  EFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

[Close]

BLAST of Carg19374 vs. TAIR 10
Match: AT2G21220.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-29
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 44  IPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPD 103
           + + A LK I+KRCSSL + Q         D VPKGHF VYVGE RSRY+VPIS LTHP 
Sbjct: 9   LTQTAMLKQILKRCSSLAKNQCYDEDGLPVD-VPKGHFPVYVGEKRSRYIVPISFLTHPK 68

Query: 104 FQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAAL 140
           F+ LL+ AEEEFGF+H MGLTIPCEEVVFRSLT+ +
Sbjct: 69  FKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

[Close]

BLAST of Carg19374 vs. TAIR 10
Match: AT4G36110.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 124.0 bits (310), Expect = 9.4e-29
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 44  IPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPD 103
           + + A+LK I+KRCSSLG+K         ++ VPKGHF VYVG++RSRYVVPIS L H +
Sbjct: 11  LSQAASLKQILKRCSSLGKKNQGNC---YFNDVPKGHFPVYVGQHRSRYVVPISWLDHHE 70

Query: 104 FQCLLRLAEEEFGFHHHMGLTIPCEEVVFRSLTAALK 141
           FQ LL+LAEEEFGF H MGLTIPC+EVVFRSL +  +
Sbjct: 71  FQSLLQLAEEEFGFEHEMGLTIPCDEVVFRSLISMFR 104

[Close]

BLAST of Carg19374 vs. TAIR 10
Match: AT4G38860.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-28
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 44  IPKPAALKHIVKRCSSLGRKQDAAATATAYDGVPKGHFAVYVGENRSRYVVPISLLTHPD 103
           + + A LK I+KRCSSLG+KQ         D VPKGHF VYVGE R+RY+VPIS LTHP+
Sbjct: 9   LTQTAMLKQILKRCSSLGKKQCYDEEGLPLD-VPKGHFPVYVGEKRTRYIVPISFLTHPE 68

Query: 104 FQCLLRLAEEEFGFHHHM-GLTIPCEEVVFRSLTAALK 141
           F  LL+ AEEEFGF H M GLTIPCEEVVF SLT+ ++
Sbjct: 69  FLILLQQAEEEFGFRHDMGGLTIPCEEVVFLSLTSMIR 105

The following BLAST results are available for this feature:

BLAST of Carg19374 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011743.1	1.1e-74	100.00	Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6572079.1	1.1e-74	100.00	Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952665.1	6.9e-50	100.00	auxin-responsive protein SAUR50-like [Cucurbita moschata]	[more]
XP_022969389.1	4.5e-49	97.98	auxin-responsive protein SAUR50-like [Cucurbita maxima] >XP_022975693.1 auxin-re...	[more]
XP_023554806.1	7.7e-49	97.98	auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19374 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65695	2.7e-28	61.22	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
Q9SL45	4.7e-25	59.18	Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR1...	[more]
P0DKL1	7.5e-23	58.14	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
P33081	9.8e-15	54.43	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33083	1.7e-14	56.16	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Carg19374 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GME7	3.4e-50	100.00	auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I2G2	2.2e-49	97.98	auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111468411...	[more]
A0A0A0K5S8	2.8e-44	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G008430 PE=3 SV=1	[more]
A0A1S3BJD0	1.4e-43	88.89	auxin-induced protein 15A OS=Cucumis melo OX=3656 GN=LOC103490328 PE=3 SV=1	[more]
A0A6J1JNJ6	3.7e-41	85.85	auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111486307...	[more]

BLAST of Carg19374 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75580.1	1.5e-29	63.11	SAUR-like auxin-responsive protein family	[more]
AT4G34760.1	1.9e-29	61.22	SAUR-like auxin-responsive protein family	[more]
AT2G21220.1	4.2e-29	64.58	SAUR-like auxin-responsive protein family	[more]
AT4G36110.1	9.4e-29	61.86	SAUR-like auxin-responsive protein family	[more]
AT4G38860.1	6.1e-28	63.27	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 58..138 e-value: 2.4E-27 score: 94.9
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 42..139
None	No IPR available	PANTHER	PTHR31374:SF311	SMALL AUXIN-UP RNA-RELATED	coord: 42..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19374-RA	Carg19374-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin