Carg19337 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19337
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Coatomer subunit epsilon
Location	Carg_Chr03: 10080109 .. 10081125 (-)
RNA-Seq Expression	Carg19337
Synteny	Carg19337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTAAGCGTTCAGTTGCTTCGTCGGTTTTCTCTTCTCTTTTATTTCTCTCTCTTTTATTTCTCTCTCTTTTATTTCTCCCGGTCTGCTAGATTCAGATATAGAGGAAGGAGCTTGGACGAGAAGGAAACCATGGCAGCACCAGATCATTTGTTCAATCTGAGAAATAATTTCTATTTGGGAGCGTATCAGGCAGCCATTAACAACAGTAATCTCTCCAATCTCTCACCCGATGACGCAATCGAGAGGGATTCTATTGTTTTCCGCTCCTACATTGCCCTTGGCAGCTATCAGGTCTGTTCCTGCACGTTAGAGTGGTTCGAAAGTCTATTCATGCTTGATTTGAATTTGATTTGAAACTCTTTGCCTACTCTTTCAGCTAGCCATCAGCGAGATCGACTCATCCGCCCCGACGTCTCTCCAAGCCGTCAAATTGCTCGCTCTTTATCTGTCCGATCCTAGTAGCAAGGTTTCATCCGTGGATCTAGAGCCCCTTTTAGCCGATTATGTTATTTGAAATATGATAAATTCTGTTTGGAATTCATAGAATTTTAGTTATATTATTGGTTCACGCATTTGAAATCCATGTTACTTCGCTTTATAAATTTAAACCATATTTGACACTGATCTGTGGAATGGAGTTCTAAAAATCTAAAGAGGGGTCGACTGGATATTCGGAGTTGGTAACTCCATTTTATTGGCTAGTGATGTTTGATGCAGTTCAAACCAACTTACATCAGATTTTACCCCATGTGCTGGACGATAAATGACATTCAGAAAAAAATGAAGACATTTTTTCTTATTCACGAGAGCAGAGTAATCAAAGTTTCTTTACTGATGAATTCTTTGAACATCGCAGGAATCAACCATCGCAAGTCTACAGGAATGGTTATCAGATCTAGCCATTGCAAACAATCCTACCTTGAGGCTAATTGCAGGAATCATATTCATGCATGAGCAAGACTTTAATGAAGCCCTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAA

mRNA sequence

TTTTGTTAAGCGTTCAGTTGCTTCGTCGGTTTTCTCTTCTCTTTTATTTCTCTCTCTTTTATTTCTCTCTCTTTTATTTCTCCCGGTCTGCTAGATTCAGATATAGAGGAAGGAGCTTGGACGAGAAGGAAACCATGGCAGCACCAGATCATTTGTTCAATCTGAGAAATAATTTCTATTTGGGAGCGTATCAGGCAGCCATTAACAACAGTAATCTCTCCAATCTCTCACCCGATGACGCAATCGAGAGGGATTCTATTGTTTTCCGCTCCTACATTGCCCTTGGCAGCTATCAGCTAGCCATCAGCGAGATCGACTCATCCGCCCCGACGTCTCTCCAAGCCGTCAAATTGCTCGCTCTTTATCTGTCCGATCCTAGTAGCAAGGAATCAACCATCGCAAGTCTACAGGAATGGTTATCAGATCTAGCCATTGCAAACAATCCTACCTTGAGGCTAATTGCAGGAATCATATTCATGCATGAGCAAGACTTTAATGAAGCCCTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAA

Coding sequence (CDS)

ATGGCAGCACCAGATCATTTGTTCAATCTGAGAAATAATTTCTATTTGGGAGCGTATCAGGCAGCCATTAACAACAGTAATCTCTCCAATCTCTCACCCGATGACGCAATCGAGAGGGATTCTATTGTTTTCCGCTCCTACATTGCCCTTGGCAGCTATCAGCTAGCCATCAGCGAGATCGACTCATCCGCCCCGACGTCTCTCCAAGCCGTCAAATTGCTCGCTCTTTATCTGTCCGATCCTAGTAGCAAGGAATCAACCATCGCAAGTCTACAGGAATGGTTATCAGATCTAGCCATTGCAAACAATCCTACCTTGAGGCTAATTGCAGGAATCATATTCATGCATGAGCAAGACTTTAATGAAGCCCTGAAACACACAAATGCTGGAGGAACCATGGAATTGTAA

Protein sequence

MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL

Homology

[Close]

BLAST of Carg19337 vs. NCBI nr
Match: KAG7034786.1 (Coatomer subunit epsilon-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. NCBI nr
Match: XP_022925729.1 (coatomer subunit epsilon-2-like [Cucurbita moschata] >KAG6581497.1 Coatomer subunit epsilon-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. NCBI nr
Match: XP_023544573.1 (coatomer subunit epsilon-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. NCBI nr
Match: XP_022977651.1 (coatomer subunit epsilon-2-like [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 8.7e-66
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+LSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. NCBI nr
Match: XP_008439506.1 (PREDICTED: coatomer subunit epsilon-1-like [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPT LQAVKLLALYLSDPS+KESTIASLQEWLSD AI NNPTLRLIAGIIFMHEQD+
Sbjct: 61  DSSAPTPLQAVKLLALYLSDPSNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDY 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. ExPASy Swiss-Prot
Match: O64748 (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana OX=3702 GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-54
Identity = 104/134 (77.61%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 2   AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEID 61
           A PDHLFNLRNNFYLGAYQ AINNS ++NLSP++A+ERD +VFRSYIALGSYQL ISEID
Sbjct: 6   AGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEID 65

Query: 62  SSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFN 121
            SA T LQAVKLLA+YLS P +KESTI+SL+EWL+D  I NN TLRLIAGIIFMHE+D+N
Sbjct: 66  ESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYN 125

Query: 122 EALKHTNAGGTMEL 136
           E LKHT+AGGTM+L
Sbjct: 126 ETLKHTHAGGTMDL 139

[Close]

BLAST of Carg19337 vs. ExPASy Swiss-Prot
Match: Q9SA78 (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana OX=3702 GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-50
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MA PDHLFNLRN+FYLGAYQAAINNS + NLS +D +ERD +V R+YIALGSYQL ISEI
Sbjct: 4   MAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEI 63

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           D +A T LQAVKLLA+YLS P +KESTI+SL+EWL+D  + NN  +RLIAG IFMHE+D+
Sbjct: 64  DEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDY 123

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHT++GGTM+L
Sbjct: 124 NEALKHTHSGGTMDL 138

[Close]

BLAST of Carg19337 vs. ExPASy Swiss-Prot
Match: Q9MAX6 (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPE1 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.5e-49
Identity = 102/135 (75.56%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MA+PD LFNLRN FYLGAYQAAINNS++  L  D A ERD+IVFRSY+ALGSYQL ISEI
Sbjct: 1   MASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSA TSLQAVKLLALYLS    KES I SL+EWLSD A+ +NP LRLIAGIIFMHEQD+
Sbjct: 61  DSSAATSLQAVKLLALYLS--GDKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDY 120

Query: 121 NEALKHTNAGGTMEL 136
            EALKHT++GGT++L
Sbjct: 121 TEALKHTHSGGTLDL 133

[Close]

BLAST of Carg19337 vs. ExPASy Swiss-Prot
Match: P0C541 (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-35
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 2   AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAI 61
           A+PDHLF LRN+FY+GAYQA I         + LSPD   ERDS+++RSYIA+GS+QL I
Sbjct: 5   ASPDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVI 64

Query: 62  SEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMH 121
            EI   A T LQAV+LL +YLS     KES I  L E L+D A+ +NP LRL+AG + MH
Sbjct: 65  DEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMH 124

Query: 122 EQDFNEALKHTNAGGTMEL 136
           E+D+  ALKHTN+GGTMEL
Sbjct: 125 ERDYAGALKHTNSGGTMEL 143

[Close]

BLAST of Carg19337 vs. ExPASy Swiss-Prot
Match: A2XY73 (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica OX=39946 GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 8.3e-35
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 2   AAPDHLFNLRNNFYLGAYQAAINNSNL----SNLSPDDAIERDSIVFRSYIALGSYQLAI 61
           A+PDHLF LR +FY+GAYQA I         + LSPD   ERDS+++RSYIA+GS+QL I
Sbjct: 5   ASPDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVI 64

Query: 62  SEIDSSAPTSLQAVKLLALYLS-DPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMH 121
            EI   A T LQAV+LLA+YLS     KES I  L E L+D A+ +NP LRL+AG + MH
Sbjct: 65  DEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMH 124

Query: 122 EQDFNEALKHTNAGGTMEL 136
           E+D+  ALKHTN+GGTMEL
Sbjct: 125 ERDYAGALKHTNSGGTMEL 143

[Close]

BLAST of Carg19337 vs. ExPASy TrEMBL
Match: A0A6J1ED13 (Coatomer subunit epsilon OS=Cucurbita moschata OX=3662 GN=LOC111433056 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. ExPASy TrEMBL
Match: A0A6J1IKJ5 (Coatomer subunit epsilon OS=Cucurbita maxima OX=3661 GN=LOC111477901 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+LSNLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF
Sbjct: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. ExPASy TrEMBL
Match: A0A1S3AYY0 (Coatomer subunit epsilon OS=Cucumis melo OX=3656 GN=LOC103484285 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.7e-63
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPT LQAVKLLALYLSDPS+KESTIASLQEWLSD AI NNPTLRLIAGIIFMHEQD+
Sbjct: 61  DSSAPTPLQAVKLLALYLSDPSNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDY 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. ExPASy TrEMBL
Match: A0A5A7UFG1 (Coatomer subunit epsilon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009940 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.7e-62
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDDAIERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPT LQAVKLLALYLSDP +KESTIASLQEWLSD AI NNPTLRLIAGIIFMHEQD+
Sbjct: 61  DSSAPTPLQAVKLLALYLSDPGNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDY 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. ExPASy TrEMBL
Match: A0A0A0KIF7 (Coatomer subunit epsilon OS=Cucumis sativus OX=3659 GN=Csa_6G526290 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.3e-62
Identity = 127/135 (94.07%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MAAPDHLFNLRNNFYLGAYQAAINNS+L NLSPDD IERDSIVFRSYIALGSYQLAISEI
Sbjct: 1   MAAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDVIERDSIVFRSYIALGSYQLAISEI 60

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           DSSAPT LQAVKLLALYLSDPSSKESTIASLQEWLSD AI NN TLRLIAGIIFMHEQD+
Sbjct: 61  DSSAPTPLQAVKLLALYLSDPSSKESTIASLQEWLSDPAIGNNSTLRLIAGIIFMHEQDY 120

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHTNAGGTMEL
Sbjct: 121 NEALKHTNAGGTMEL 135

[Close]

BLAST of Carg19337 vs. TAIR 10
Match: AT2G34840.1 (Coatomer epsilon subunit )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 104/134 (77.61%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 2   AAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEID 61
           A PDHLFNLRNNFYLGAYQ AINNS ++NLSP++A+ERD +VFRSYIALGSYQL ISEID
Sbjct: 6   AGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEID 65

Query: 62  SSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFN 121
            SA T LQAVKLLA+YLS P +KESTI+SL+EWL+D  I NN TLRLIAGIIFMHE+D+N
Sbjct: 66  ESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYN 125

Query: 122 EALKHTNAGGTMEL 136
           E LKHT+AGGTM+L
Sbjct: 126 ETLKHTHAGGTMDL 139

[Close]

BLAST of Carg19337 vs. TAIR 10
Match: AT1G30630.1 (Coatomer epsilon subunit )

HSP 1 Score: 200.7 bits (509), Expect = 7.6e-52
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MAAPDHLFNLRNNFYLGAYQAAINNSNLSNLSPDDAIERDSIVFRSYIALGSYQLAISEI 60
           MA PDHLFNLRN+FYLGAYQAAINNS + NLS +D +ERD +V R+YIALGSYQL ISEI
Sbjct: 4   MAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEI 63

Query: 61  DSSAPTSLQAVKLLALYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDF 120
           D +A T LQAVKLLA+YLS P +KESTI+SL+EWL+D  + NN  +RLIAG IFMHE+D+
Sbjct: 64  DEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDY 123

Query: 121 NEALKHTNAGGTMEL 136
           NEALKHT++GGTM+L
Sbjct: 124 NEALKHTHSGGTMDL 138

[Close]

BLAST of Carg19337 vs. TAIR 10
Match: AT2G34840.2 (Coatomer epsilon subunit )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 76  LYLSDPSSKESTIASLQEWLSDLAIANNPTLRLIAGIIFMHEQDFNEALKHTNAGGTMEL 135
           +YLS P +KESTI+SL+EWL+D  I NN TLRLIAGIIFMHE+D+NE LKHT+AGGTM+L
Sbjct: 1   MYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDL 60

The following BLAST results are available for this feature:

BLAST of Carg19337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034786.1	2.3e-66	100.00	Coatomer subunit epsilon-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925729.1	2.3e-66	100.00	coatomer subunit epsilon-2-like [Cucurbita moschata] >KAG6581497.1 Coatomer subu...	[more]
XP_023544573.1	2.3e-66	100.00	coatomer subunit epsilon-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977651.1	8.7e-66	99.26	coatomer subunit epsilon-2-like [Cucurbita maxima]	[more]
XP_008439506.1	1.2e-62	94.81	PREDICTED: coatomer subunit epsilon-1-like [Cucumis melo]	[more]

BLAST of Carg19337 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64748	2.1e-54	77.61	Coatomer subunit epsilon-2 OS=Arabidopsis thaliana OX=3702 GN=At2g34840 PE=2 SV=...	[more]
Q9SA78	1.1e-50	71.85	Coatomer subunit epsilon-1 OS=Arabidopsis thaliana OX=3702 GN=At1g30630 PE=2 SV=...	[more]
Q9MAX6	4.5e-49	75.56	Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPE1 PE=...	[more]
P0C541	2.8e-35	57.55	Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0644...	[more]
A2XY73	8.3e-35	57.55	Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica OX=39946 GN=H0413E07.10...	[more]

BLAST of Carg19337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED13	1.1e-66	100.00	Coatomer subunit epsilon OS=Cucurbita moschata OX=3662 GN=LOC111433056 PE=3 SV=1	[more]
A0A6J1IKJ5	4.2e-66	99.26	Coatomer subunit epsilon OS=Cucurbita maxima OX=3661 GN=LOC111477901 PE=3 SV=1	[more]
A0A1S3AYY0	5.7e-63	94.81	Coatomer subunit epsilon OS=Cucumis melo OX=3656 GN=LOC103484285 PE=3 SV=1	[more]
A0A5A7UFG1	1.7e-62	94.07	Coatomer subunit epsilon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KIF7	6.3e-62	94.07	Coatomer subunit epsilon OS=Cucumis sativus OX=3659 GN=Csa_6G526290 PE=3 SV=1	[more]

BLAST of Carg19337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34840.1	1.5e-55	77.61	Coatomer epsilon subunit	[more]
AT1G30630.1	7.6e-52	71.85	Coatomer epsilon subunit	[more]
AT2G34840.2	1.6e-20	73.33	Coatomer epsilon subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF04733	Coatomer_E	coord: 4..135 e-value: 1.7E-52 score: 178.7
None	No IPR available	PANTHER	PTHR10805:SF4	COATOMER SUBUNIT EPSILON	coord: 3..135
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 5..135 e-value: 5.5E-39 score: 136.6
IPR006822	Coatomer, epsilon subunit	PANTHER	PTHR10805	COATOMER SUBUNIT EPSILON	coord: 3..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19337-RA	Carg19337-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0015031	protein transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005198	structural molecule activity