Carg19335 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19335
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr03: 10071162 .. 10072929 (+)
RNA-Seq Expression	Carg19335
Synteny	Carg19335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACCTAAATCTTTCTATTTTGTTATTGTTATTTCATTGATGAGCTATTGCAAGAGGAATTCCAGAAAAAGCTAAGCAGAAGAAGCAGACGGGAAAGAGGCGTTGGAGATGGAAAAATGGAGGAGATTGTTGAATTTGGAGAGAAGAGAAGACGTTATTAATTAAAGCACCATTGTTTCGGCGGTGAGATTGAAGAAACAAAGCAAAATTTGGGGTGCCGTGGGGATGTGGTAGTGGATGTGACTACTAAGCTTTCCGTGATGGATGGATGCGATGGGAATGGCTCCAAAATTTCGCGTAAAATCCCCAATAACAGGTCAAATCACTTCAATTTCTAACTCACTTTGCTGTTCATTTCGCCTTTTCATTTCCCACGCCCTAGATTTTGTTTCAATTTACGTGAATGAATGATAATGCATGTGATATTCTTTCTCATTCTGTGATGCGTGGAAGAAGTAGTAGTAATCATAGTCCTTGAAGAACAGTTGGTGTCTGTAAAGGGAAAGGATGAAGATGAATTGAGTAAGAACTTAGAACACATGCAATGTAGTCGCACATATTTATTATGTTGACACTCAGGGGGGTACTATATAGTACACCAGACATTGGTCTTTTCGTCGGCAACAGCCTCAGAAATTACCAAATCATGTGCACCCAATCCAATATGAGATTGTTCAAAAAAATGTTGGTTGTAAGGAGGTGGTGGGATGGGCGTAGAACTAGAAAGAAACAGAAAAGGGTGGTGGAGTGCAGACTTCTCTCTCTCTTTTTCTTAATTGTTTATGGCAGAATGGCTGGTTTTTGTCTGCCTCTTCCGTAGTTTGGCGCCCAAGATGGGGTAAATACAGGCAATGTTAGGTCTTTTCCGTATGTCAAATCTTCCGGTCCTTTCACATTCCCCTTTTCCTCACTGCTTTAGATTTCATCAATCATCCAAATCCACCCCCCTCTCCTCATTTATCGGATCGCTCAATTTTCTTTCTTTTTTTTTTCAAAATTTGCTTCGTTTTATGATCCTTCGGGTTAGACAGTGTTCATCTTTTCAAGAAAAGTACATAAAGGTTGTCTGAGAGATGTGTTTTCTGAACTTTGTTTTAGAGTGACTTTATTTTTAGAACACTTGAAGGTGATGTAATTTGAAGATCATCTATCTGTGATTTTGTGATTTCAAATCATCCTTTGAAACATTCCTTTAATAGAAACTAGAAACCTGTTTGTTATATTCTTCCATTCATGCCAATCTTACTTACAAACTCAGAAATCAAGGCTAACCTGAGAAAATCTTCCATTCAATAAGAGAATTTGATCCCAATTTAACATTCAATTTACATAAATATGTAATAAAACTATCTTCCTCCTTCTGACAGTCTGCCTGCCTGCTTCGGAGGAGCTTGCCATTAAGAGAGGAGGAGGAAGGATGGCAGAAGGACAAAAATGTAGTTCGCTTTAAGACCCTGATTGGGTTTAGAGCAAAGCTTTCCCATTAAGAGAAAAAGAAAAGGCCAGCAGCACCCATGGCACTTAACCTGATGAATGTATTTTGCCAGCATGCTAGCTCTAGCTGCTTACCGAGTTAGTAAACCAAAGCTAATTGATTTCCATTTGTCCTGTAACTTTCACTTTTTGTTCAGAAGGTTGGCCAAGTTCCGAAGATCCTCAAATGCATGCATTGTATCAGCATCCAACCCTCCTGCAAACTGTGGCCGGGAAAAGGCAAAACACAATCAGCAACAATCTCTTTTTGTTTTCCTGAACAAAAATGATTAA

mRNA sequence

TTAACCTAAATCTTTCTATTTTGTTATTGTTATTTCATTGATGAGCTATTGCAAGAGGAATTCCAGAAAAAGCTAAGCAGAAGAAGCAGACGGGAAAGAGGCGTTGGAGATGGAAAAATGGAGGAGATTGTTGAATTTGGAGAGAAGAGAAGACGTTATTAATTAAAGCACCATTGTTTCGGCGGTGAGATTGAAGAAACAAAGCAAAATTTGGGGTGCCGTGGGGATGTGGTAGTGGATGTGACTACTAAGCTTTCCGTGATGGATGGATGCGATGGGAATGGCTCCAAAATTTCGCGTAAAATCCCCAATAACAGAAGGTTGGCCAAGTTCCGAAGATCCTCAAATGCATGCATTGTATCAGCATCCAACCCTCCTGCAAACTGTGGCCGGGAAAAGGCAAAACACAATCAGCAACAATCTCTTTTTGTTTTCCTGAACAAAAATGATTAA

Coding sequence (CDS)

ATGGATGGATGCGATGGGAATGGCTCCAAAATTTCGCGTAAAATCCCCAATAACAGAAGGTTGGCCAAGTTCCGAAGATCCTCAAATGCATGCATTGTATCAGCATCCAACCCTCCTGCAAACTGTGGCCGGGAAAAGGCAAAACACAATCAGCAACAATCTCTTTTTGTTTTCCTGAACAAAAATGATTAA

Protein sequence

MDGCDGNGSKISRKIPNNRRLAKFRRSSNACIVSASNPPANCGREKAKHNQQQSLFVFLNKND

Homology

[Close]

BLAST of Carg19335 vs. NCBI nr
Match: KAG7034784.1 (hypothetical protein SDJN02_04516 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MDGCDGNGSKISRKIPNNRRLAKFRRSSNACIVSASNPPANCGREKAKHNQQQSLFVFLN 60
          MDGCDGNGSKISRKIPNNRRLAKFRRSSNACIVSASNPPANCGREKAKHNQQQSLFVFLN
Sbjct: 1  MDGCDGNGSKISRKIPNNRRLAKFRRSSNACIVSASNPPANCGREKAKHNQQQSLFVFLN 60

Query: 61 KND 64
          KND
Sbjct: 61 KND 63

The following BLAST results are available for this feature:

BLAST of Carg19335 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034784.1	2.2e-27	100.00	hypothetical protein SDJN02_04516 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg19335 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19335 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19335 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19335-RA	Carg19335-RA	mRNA