Carg19334 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19334
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Carg_Chr03: 10070112 .. 10070808 (-)
RNA-Seq Expression	Carg19334
Synteny	Carg19334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACTTCGATTAAACAATCTTCTTATTTTTCTCATTATGTTCTGGTATTTCAACTCGAAGCATGAAAATGTTCTAGTTGTAACCGTACGTGACGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

mRNA sequence

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

Coding sequence (CDS)

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

Protein sequence

MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS

Homology

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: KAG6581495.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034783.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417.5 bits (1072), Expect = 6.3e-113
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60
           MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ
Sbjct: 1   MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60

Query: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120
           YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG
Sbjct: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120

Query: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180
           SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA
Sbjct: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEPTDHSAS 200
           PLKKHQRHAPDEPTDHSAS
Sbjct: 181 PLKKHQRHAPDEPTDHSAS 199

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 5.5e-109
Identity = 196/199 (98.49%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60
           MLAMESVSTSTTTTSTSDN   HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ
Sbjct: 1   MLAMESVSTSTTTTSTSDN---HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60

Query: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120
           YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG
Sbjct: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120

Query: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180
           SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA
Sbjct: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEPTDHSAS 200
           PLKKHQRHAPDEPTDHSAS
Sbjct: 181 PLKKHQRHAPDEPTDHSAS 196

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.3 bits (996), Expect = 4.1e-104
Identity = 192/206 (93.20%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MLAMES-------VSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRR 60
           MLAMES        S STTTTSTSDNHHH H    YPLLEPAPPSPPPPALSRYESQKRR
Sbjct: 1   MLAMESASAVNSYTSASTTTTSTSDNHHHLH----YPLLEPAPPSPPPPALSRYESQKRR 60

Query: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120
           DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC
Sbjct: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120

Query: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK 180
           PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK
Sbjct: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK 180

Query: 181 RKKSAMAPLKKHQRHAPDEPTDHSAS 200
           RKKSAMAPLKKHQRHAPDEPTDHSAS
Sbjct: 181 RKKSAMAPLKKHQRHAPDEPTDHSAS 202

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 4.7e-100
Identity = 190/209 (90.91%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MLAMESV-------STSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRR 60
           MLAMES        S STTTTSTSDNHHH      YPLLEPAPPSPPPPALSRYESQKRR
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH------YPLLEPAPPSPPPPALSRYESQKRR 60

Query: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120
           DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC
Sbjct: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120

Query: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK 180
           PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KK
Sbjct: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KK 180

Query: 181 RKKSAMAPLKKHQRHAPDEP---TDHSAS 200
           RKKSAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 RKKSAMAPLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 344.7 bits (883), Expect = 5.2e-91
Identity = 170/197 (86.29%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 3   AMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYL 62
           A+ S ++++TTTS SDNHHH     QYPLL PAPPSPPPPALSRYESQKRRDWNTFGQYL
Sbjct: 9   AVNSYTSASTTTSNSDNHHHR----QYPLLVPAPPSPPPPALSRYESQKRRDWNTFGQYL 68

Query: 63  KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSL 122
           KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSL
Sbjct: 69  KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSL 128

Query: 123 DALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPL 182
           DALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKS M  +
Sbjct: 129 DALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMPSV 188

Query: 183 KKHQRHAPDEPTDHSAS 200
           KK+Q   P    DHSAS
Sbjct: 189 KKNQ---PMPLLDHSAS 198

[Close]

BLAST of Carg19334 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-69
Identity = 130/213 (61.03%), Postives = 147/213 (69.01%), Query Frame = 0


Query: 18  DNHHHHHHHLQYPLL-----EPA------------------------------------- 77
           D HHHHHHH  + ++     +PA                                     
Sbjct: 2   DRHHHHHHHHHHHMMSGGGQDPAAGDGGAGGATQDSFFLGPAAAAMFSGAGSSSSGAGTS 61

Query: 78  --------PPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLD 137
                    PS   P+LSRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+D
Sbjct: 62  AGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMD 121

Query: 138 QFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGT 181
           QFGKTKVHT  CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG 
Sbjct: 122 QFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGA 181

[Close]

BLAST of Carg19334 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.8e-69
Identity = 130/213 (61.03%), Postives = 147/213 (69.01%), Query Frame = 0


Query: 18  DNHHHHHHHLQYPLL-----EPA------------------------------------- 77
           D HHHHHHH  + ++     +PA                                     
Sbjct: 2   DRHHHHHHHHHHHMMSGGGQDPAAGDGGAGGATQDSFFLGPAAAAMFSGAGSSSSGAGTS 61

Query: 78  --------PPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLD 137
                    PS   P+LSRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+D
Sbjct: 62  AGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMD 121

Query: 138 QFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGT 181
           QFGKTKVHT  CPF+GHP PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG 
Sbjct: 122 QFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGA 181

[Close]

BLAST of Carg19334 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 9.9e-69
Identity = 128/175 (73.14%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 2   LAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQY 61
           L + + +T+TTT+S+S +               +        LSRYE+QKRRDWNTFGQY
Sbjct: 19  LMIAAAATTTTTSSSSSS---------------SSGGSGTNQLSRYENQKRRDWNTFGQY 78

Query: 62  LKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGS 121
           L+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP PPAPC CPLRQAWGS
Sbjct: 79  LRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGS 138

Query: 122 LDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 177
           LDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAKARGI+YEKKKRK+
Sbjct: 139 LDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Carg19334 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 42  PALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPF 101
           P  SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPF
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 102 FGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQ 161
           FGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQ
Sbjct: 78  FGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQ 137

Query: 162 AKARGIAYEKKKRKK 177
           AKARGIAYEKK+RK+
Sbjct: 138 AKARGIAYEKKRRKR 152

[Close]

BLAST of Carg19334 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-68
Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 42  PALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPF 101
           P  SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPF
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 102 FGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQ 161
           FGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQ
Sbjct: 78  FGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQ 137

Query: 162 AKARGIAYEKKKRKK 177
           AKARGIAYEKK+RK+
Sbjct: 138 AKARGIAYEKKRRKR 152

[Close]

BLAST of Carg19334 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-109
Identity = 196/199 (98.49%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60
           MLAMESVSTSTTTTSTSDN   HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ
Sbjct: 1   MLAMESVSTSTTTTSTSDN---HHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60

Query: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120
           YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG
Sbjct: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120

Query: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180
           SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA
Sbjct: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEPTDHSAS 200
           PLKKHQRHAPDEPTDHSAS
Sbjct: 181 PLKKHQRHAPDEPTDHSAS 196

[Close]

BLAST of Carg19334 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 190/209 (90.91%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MLAMESV-------STSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRR 60
           MLAMES        S STTTTSTSDNHHH      YPLLEPAPPSPPPPALSRYESQKRR
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHHH------YPLLEPAPPSPPPPALSRYESQKRR 60

Query: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120
           DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC
Sbjct: 61  DWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPC 120

Query: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKK 180
           PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KK
Sbjct: 121 PLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KK 180

Query: 181 RKKSAMAPLKKHQRHAPDEP---TDHSAS 200
           RKKSAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 181 RKKSAMAPLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of Carg19334 vs. ExPASy TrEMBL
Match: A0A0A0KPA1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MLAME-----SVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDW 60
           MLAME     +V+T T+ ++TSDNH H      YPLL PAPPSPP PALSRYESQKRRDW
Sbjct: 1   MLAMEVTASSAVTTYTSASTTSDNHPH------YPLLLPAPPSPPTPALSRYESQKRRDW 60

Query: 61  NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPL 120
           NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPL
Sbjct: 61  NTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPL 120

Query: 121 RQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRK 180
           RQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKARGIAYEKKKRK 180

Query: 181 KSAMAPLK-KHQRHAP 191
           KS MAPLK  H +  P
Sbjct: 181 KSGMAPLKINHHQPMP 190

[Close]

BLAST of Carg19334 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.6e-85
Identity = 164/195 (84.10%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 1   MLAMESVSTS----TTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWN 60
           MLAME+ S++    T+ ++TSDNH H      YPLL PAPPSPP PALSRYESQKRRDWN
Sbjct: 1   MLAMEAASSAVTSYTSASTTSDNHLH------YPLLLPAPPSPPTPALSRYESQKRRDWN 60

Query: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120
           TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 180
           QAWGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKK
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKK 180

Query: 181 SAMAPLK-KHQRHAP 191
           SAMA LK  H +  P
Sbjct: 181 SAMASLKINHHQPMP 189

[Close]

BLAST of Carg19334 vs. ExPASy TrEMBL
Match: A0A1S3AZK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.6e-85
Identity = 164/195 (84.10%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 1   MLAMESVSTS----TTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWN 60
           MLAME+ S++    T+ ++TSDNH H      YPLL PAPPSPP PALSRYESQKRRDWN
Sbjct: 1   MLAMEAASSAVTSYTSASTTSDNHLH------YPLLLPAPPSPPTPALSRYESQKRRDWN 60

Query: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLR 120
           TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHPQPPAPCPCPLR
Sbjct: 61  TFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 180
           QAWGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKK
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKK 180

Query: 181 SAMAPLK-KHQRHAP 191
           SAMA LK  H +  P
Sbjct: 181 SAMASLKINHHQPMP 189

[Close]

BLAST of Carg19334 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.2 bits (666), Expect = 7.0e-70
Identity = 128/175 (73.14%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 2   LAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQY 61
           L + + +T+TTT+S+S +               +        LSRYE+QKRRDWNTFGQY
Sbjct: 19  LMIAAAATTTTTSSSSSS---------------SSGGSGTNQLSRYENQKRRDWNTFGQY 78

Query: 62  LKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGS 121
           L+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP PPAPC CPLRQAWGS
Sbjct: 79  LRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGS 138

Query: 122 LDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKK 177
           LDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAKARGI+YEKKKRK+
Sbjct: 139 LDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Carg19334 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 258.8 bits (660), Expect = 3.5e-69
Identity = 118/139 (84.89%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 38  SPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS 97
           S P    SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 98  CCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 157
            C F+GHP PPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 158 RDSQAKARGIAYEKKKRKK 177
           RD Q+KARG++YEKKKRK+
Sbjct: 166 RDMQSKARGVSYEKKKRKR 184

[Close]

BLAST of Carg19334 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-65
Identity = 112/143 (78.32%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 34  PAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTK 93
           P+  S PP   SRYESQKRRDWNTF QYLKNH+PPL LSRCSGAH++EFL+YLDQFGKTK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 94  VHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLY 153
           VH + CP+FGH QPP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF  RAVR+Y
Sbjct: 79  VHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIY 138

Query: 154 LREVRDSQAKARGIAYEKKKRKK 177
           LREVR+SQAKARGI YEKKKRK+
Sbjct: 139 LREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of Carg19334 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.9 bits (616), Expect = 4.4e-64
Identity = 110/141 (78.01%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 41  PPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 100
           PP+ SRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 101 FFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 160
           FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG+RAVRL+LREVRD 
Sbjct: 80  FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDF 139

Query: 161 QAKARGIAYEKKKRKKSAMAP 182
           QAKARG++YEKK+++ +   P
Sbjct: 140 QAKARGVSYEKKRKRVNRQKP 160

[Close]

BLAST of Carg19334 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-61
Identity = 109/159 (68.55%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 17  SDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSG 76
           S NH++ + +       P+  S PP + SRYE+QKRRDWNTF QYL+NH PPL+L+ CSG
Sbjct: 5   SQNHNNRNPNTSLSTQTPSSFSSPPSS-SRYENQKRRDWNTFCQYLRNHHPPLSLASCSG 64

Query: 77  AHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEEN 136
           AH+L+FLRYLDQFGKTKVH   C FFG P PPAPCPCPLRQAWGSLDALIGRLRAA+EEN
Sbjct: 65  AHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEN 124

Query: 137 GGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRK 176
           GG PET+PFG+R+VR++LREVRD QAK+RG++YEKK+++
Sbjct: 125 GGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

The following BLAST results are available for this feature:

BLAST of Carg19334 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581495.1	6.3e-113	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_022925731.1	5.5e-109	98.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]
XP_023544575.1	4.1e-104	93.20	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978370.1	4.7e-100	90.91	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_038881876.1	5.2e-91	86.29	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]

BLAST of Carg19334 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XAV5	5.8e-69	61.03	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	5.8e-69	61.03	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9LW68	9.9e-69	73.14	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	2.9e-68	87.41	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	2.9e-68	87.41	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]

BLAST of Carg19334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED05	2.7e-109	98.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IPW9	2.3e-100	90.91	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KPA1	2.1e-85	83.67	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 S...	[more]
A0A5A7UB86	4.6e-85	84.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZK8	4.6e-85	84.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg19334 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	7.0e-70	73.14	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.5e-69	84.89	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.4e-65	78.32	Protein of unknown function (DUF640)	[more]
AT5G28490.1	4.4e-64	78.01	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.2e-61	68.55	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 39..159 e-value: 3.8E-66 score: 221.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 46..173 score: 83.780014
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 6..187
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 6..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19334-RA	Carg19334-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus