Carg19289 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19289
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationCarg_Chr03: 9788392 .. 9790355 (+)
RNA-Seq ExpressionCarg19289
SyntenyCarg19289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATGTACTTCGTCAGAAACATAAATAGATCTTTCTCCAAACTCAATGATTGAATAATTTGTTGTCTGGAGTGAAAATTGGGCCTTTGAGGCTTCATCACCATATCCTGTAGTTGAATTTTCATGTCGTTGTGGGATGAGTTCCTGAAATTTGTGCTCGCACAGTATCCAGTGAACTTGCTAAAAGACTAATGCAATCTTATGTATAGTTTGTCGAGTTTGAAATGAGGAATTTGTAATGTTAAAATGCATAAGAATACTGTCATTCAGTCCAACAGTTTCAACGCAGATTAGTCAACAGAACATGCAAGATTAAACATTCAAATCATGCCTGCCAATTAATCTTTCCCTACACGGCCTAAACGAGTTTTTCATATGTTATGAAATGGGACATTAAACTCTCAGAGGGACTTGTTTGTTAGTACCAACCTTTTTCTTTGGAGGAGTTCATATCTTTTCGTTTGCGCACTCTGGAAGACATGAATGTGCTTTCTTTCTGATTCAACCTTTTCCTTCAGTTTCTCTAGGACTGTTAATCATTACAAATCAAAATAAGAAAAATGTATGGAGAACATCTATATGAACAAAAATAATAGAGGATTATTTATTTATTTATGTAACAGCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAATGAGGAAAGAGCAGAGCCGATTTGATGCACGGATCAAAGGAATTTACCACAACTGGTTTTTAAAGTTTAACCTAATCCCTCTATTTAAATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATGAAGCCCAAAAATTTAAATTATTTAGGCTAGTTAGGGCAGTTTTTCCGTACAGTCAAAAGGAACGAGGTGTTACCAGAGACATAAGTAGGCTGGAGCAACTTAATTGAACTGGAAGGTAGGGAATGTATTGGGCAAGAATCATTATCAATCCGTGTAGCAATCTCTTGAAACGCCTAACCTGAAACATAAGAATCTAAGAGTAAGCAAGTTGGACAACGACATATTGCTCAATTATTCATCTCTAACTTCTTTTAACCATAAACAAACTGTAACCGCCCAAATCTATCACTAGCAGATATTGTCTTTTTTGAGTTTTCTCTTCCGGACTTTCCCTCAAGTTTTTAAAATGTGTCTACTAGGGAGAGGTTTCTACACTTGAGTAGGGAGAGGTTTCTACACCTAAGATATGATTTGATCGCACACTAATTAAGAGACAGGCCAATTTACCATCATGTATGATTCTAATTACTCCGGAAGTTTATATCTTCTTTTCCCAGTGGTTAAGAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTAAGGTTGACCCTTAAAACCCCCCATCAACACCACTGCATGAATCCAAACAGTATATGCAGTCAGCACTATAATTTTGAGGTAAACCAAAAAGAACATGCCAGTAAAAAAAGTTATGAGGATTAATTATAACAATGGTGAACAAAACTTCAACAGTATAGCCATAGCTACAAGAAGTAGAACTTGCAATTCCTTTGTGAAGTTAATATTGTCCATCAATCTTCCAGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA

mRNA sequence

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA

Coding sequence (CDS)

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA

Protein sequence

MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAPMVVSANSIIERDANQAEQACLEPVRHCRENHLCKPSVLPPICPRSVAHQKIFGIITDAGLELRSLDELRISSAMED
Homology
BLAST of Carg19289 vs. NCBI nr
Match: KAG7034740.1 (hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
           MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP
Sbjct: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60

Query: 61  MVVSANSIIERDANQAEQACLEPVRHCRENHLCKPSVLPPICPRSVAHQKIFGIITDAGL 120
           MVVSANSIIERDANQAEQACLEPVRHCRENHLCKPSVLPPICPRSVAHQKIFGIITDAGL
Sbjct: 61  MVVSANSIIERDANQAEQACLEPVRHCRENHLCKPSVLPPICPRSVAHQKIFGIITDAGL 120

Query: 121 ELRSLDELRISSAMED 137
           ELRSLDELRISSAMED
Sbjct: 121 ELRSLDELRISSAMED 136

BLAST of Carg19289 vs. NCBI nr
Match: KAG6594447.1 (hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19
Identity = 59/67 (88.06%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD SK EYPASP S   STTPAP
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60

Query: 61 MVVSANS 68
            VSANS
Sbjct: 61 ATVSANS 67

BLAST of Carg19289 vs. NCBI nr
Match: KGN49420.1 (hypothetical protein Csa_003492 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSI 69
           MVV+ANS+
Sbjct: 61 SMVVAANSM 69

BLAST of Carg19289 vs. NCBI nr
Match: KAA0052524.1 (hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK13301.1 hypothetical protein E5676_scaffold255G009220 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-17
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PMVVSANSI 69
           M V ANS+
Sbjct: 61 SMAVGANSM 69

BLAST of Carg19289 vs. NCBI nr
Match: KAF5944060.1 (hypothetical protein HYC85_018137 [Camellia sinensis])

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-10
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MAN+RIARFVTEVAPPQ +SVMR R SK+LDTI+EEERD GS +    SP+S  SS++  
Sbjct: 1  MANARIARFVTEVAPPQFVSVMRHRASKMLDTINEEERDIGSNDSLSLSPKSSSSSSSST 60

Query: 61 PMVVSANSI 69
          P   S ++I
Sbjct: 61 PTSASPSNI 69

BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A0A0KI68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.6e-19
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSI 69
           MVV+ANS+
Sbjct: 61 SMVVAANSM 69

BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A5D3CN92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009220 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.3e-18
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PMVVSANSI 69
           M V ANS+
Sbjct: 61 SMAVGANSM 69

BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A7J7GTQ9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_018137 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MAN+RIARFVTEVAPPQ +SVMR R SK+LDTI+EEERD GS +    SP+S  SS++  
Sbjct: 1  MANARIARFVTEVAPPQFVSVMRHRASKMLDTINEEERDIGSNDSLSLSPKSSSSSSSST 60

Query: 61 PMVVSANSI 69
          P   S ++I
Sbjct: 61 PTSASPSNI 69

BLAST of Carg19289 vs. ExPASy TrEMBL
Match: W9QKX7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011438 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EEERD   N+   SP + P+ T P+ 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCAND---SPNTSPAKTIPSA 60

Query: 61 MVVSANS 68
             S+ S
Sbjct: 61 HAFSSAS 64

BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A2P6Q5Q7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-----GSKNEYPASPRSLPSS 60
           MAN+R+ARF+TE APPQI+SVMRRRTSKVLDTI+EE+R+      S N  P    +LPSS
Sbjct: 52  MANARLARFITEAAPPQIVSVMRRRTSKVLDTITEEDREYASPNDSLNSSPKGSSALPSS 111

Query: 61  TTPAPMVVSA 66
           +  AP   SA
Sbjct: 112 SPSAPSFGSA 121

BLAST of Carg19289 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-11
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSS---T 60
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EEER+ G+ + +P+S  S   S   T
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 TPAPMVVSANS 68
          +P    VS+ S
Sbjct: 61 SPYSSSVSSAS 71

BLAST of Carg19289 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEE 38
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EEE
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7034740.12.1e-67100.00hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594447.13.6e-1988.06hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49420.11.4e-1884.06hypothetical protein Csa_003492 [Cucumis sativus][more]
KAA0052524.11.5e-1781.16hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK133... [more]
KAF5944060.15.2e-1060.87hypothetical protein HYC85_018137 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KI686.6e-1984.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1[more]
A0A5D3CN927.3e-1881.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7GTQ92.5e-1060.87Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_018137 PE=4 SV=1[more]
W9QKX73.3e-1062.69Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011438 PE=4 SV=1[more]
A0A2P6Q5Q75.6e-1060.00Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G30260.15.0e-1156.34BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.1e-0564.10Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..59
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 1..67
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19289-RACarg19289-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity