Carg19289 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATGTACTTCGTCAGAAACATAAATAGATCTTTCTCCAAACTCAATGATTGAATAATTTGTTGTCTGGAGTGAAAATTGGGCCTTTGAGGCTTCATCACCATATCCTGTAGTTGAATTTTCATGTCGTTGTGGGATGAGTTCCTGAAATTTGTGCTCGCACAGTATCCAGTGAACTTGCTAAAAGACTAATGCAATCTTATGTATAGTTTGTCGAGTTTGAAATGAGGAATTTGTAATGTTAAAATGCATAAGAATACTGTCATTCAGTCCAACAGTTTCAACGCAGATTAGTCAACAGAACATGCAAGATTAAACATTCAAATCATGCCTGCCAATTAATCTTTCCCTACACGGCCTAAACGAGTTTTTCATATGTTATGAAATGGGACATTAAACTCTCAGAGGGACTTGTTTGTTAGTACCAACCTTTTTCTTTGGAGGAGTTCATATCTTTTCGTTTGCGCACTCTGGAAGACATGAATGTGCTTTCTTTCTGATTCAACCTTTTCCTTCAGTTTCTCTAGGACTGTTAATCATTACAAATCAAAATAAGAAAAATGTATGGAGAACATCTATATGAACAAAAATAATAGAGGATTATTTATTTATTTATGTAACAGCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAATGAGGAAAGAGCAGAGCCGATTTGATGCACGGATCAAAGGAATTTACCACAACTGGTTTTTAAAGTTTAACCTAATCCCTCTATTTAAATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATGAAGCCCAAAAATTTAAATTATTTAGGCTAGTTAGGGCAGTTTTTCCGTACAGTCAAAAGGAACGAGGTGTTACCAGAGACATAAGTAGGCTGGAGCAACTTAATTGAACTGGAAGGTAGGGAATGTATTGGGCAAGAATCATTATCAATCCGTGTAGCAATCTCTTGAAACGCCTAACCTGAAACATAAGAATCTAAGAGTAAGCAAGTTGGACAACGACATATTGCTCAATTATTCATCTCTAACTTCTTTTAACCATAAACAAACTGTAACCGCCCAAATCTATCACTAGCAGATATTGTCTTTTTTGAGTTTTCTCTTCCGGACTTTCCCTCAAGTTTTTAAAATGTGTCTACTAGGGAGAGGTTTCTACACTTGAGTAGGGAGAGGTTTCTACACCTAAGATATGATTTGATCGCACACTAATTAAGAGACAGGCCAATTTACCATCATGTATGATTCTAATTACTCCGGAAGTTTATATCTTCTTTTCCCAGTGGTTAAGAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTAAGGTTGACCCTTAAAACCCCCCATCAACACCACTGCATGAATCCAAACAGTATATGCAGTCAGCACTATAATTTTGAGGTAAACCAAAAAGAACATGCCAGTAAAAAAAGTTATGAGGATTAATTATAACAATGGTGAACAAAACTTCAACAGTATAGCCATAGCTACAAGAAGTAGAACTTGCAATTCCTTTGTGAAGTTAATATTGTCCATCAATCTTCCAGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTCGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATAATAGAGCGTGATGCAAATCAAGCTGAGCAAGCTTGCCTGGAGCCTGTTAGGCATTGCAGAGAGAACCATCTTTGCAAGCCTTCGGTGTTGCCACCAATATGTCCACGCTCGGTAGCTCACCAAAAAATATTCGGGATCATAACAGATGCCGGCCTTGAGCTTAGGTCCCTTGATGAGCTCAGAATTTCATCTGCTATGGAGGATTGA MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAPMVVSANSIIERDANQAEQACLEPVRHCRENHLCKPSVLPPICPRSVAHQKIFGIITDAGLELRSLDELRISSAMED Homology
BLAST of Carg19289 vs. NCBI nr
Match: KAG7034740.1 (hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Carg19289 vs. NCBI nr
Match: KAG6594447.1 (hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19 Identity = 59/67 (88.06%), Postives = 59/67 (88.06%), Query Frame = 0
BLAST of Carg19289 vs. NCBI nr
Match: KGN49420.1 (hypothetical protein Csa_003492 [Cucumis sativus]) HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18 Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
BLAST of Carg19289 vs. NCBI nr
Match: KAA0052524.1 (hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK13301.1 hypothetical protein E5676_scaffold255G009220 [Cucumis melo var. makuwa]) HSP 1 Score: 100.1 bits (248), Expect = 1.5e-17 Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0
BLAST of Carg19289 vs. NCBI nr
Match: KAF5944060.1 (hypothetical protein HYC85_018137 [Camellia sinensis]) HSP 1 Score: 75.1 bits (183), Expect = 5.2e-10 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0
BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A0A0KI68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 6.6e-19 Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A5D3CN92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009220 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 7.3e-18 Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0
BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A7J7GTQ9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_018137 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0
BLAST of Carg19289 vs. ExPASy TrEMBL
Match: W9QKX7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011438 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0
BLAST of Carg19289 vs. ExPASy TrEMBL
Match: A0A2P6Q5Q7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
BLAST of Carg19289 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 5.0e-11 Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0
BLAST of Carg19289 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein ) HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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