Carg19255 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19255
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	Carg_Chr03: 9640381 .. 9640680 (+)
RNA-Seq Expression	Carg19255
Synteny	Carg19255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

mRNA sequence

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

Coding sequence (CDS)

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

Protein sequence

MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS

Homology

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_022957100.1 (uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 uncharacterized protein LOC111493328 [Cucurbita maxima] >KAG6601601.1 hypothetical protein SDJN03_06834, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034706.1 hypothetical protein SDJN02_04436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_023552719.1 (uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVP+VLTQLATGLSVLAGAVLVKSVMDKPMAGS PRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPVVLTQLATGLSVLAGAVLVKSVMDKPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_038892730.1 (uncharacterized protein LOC120081711 [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 6.9e-44
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVLTQLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_008446034.1 (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 7.6e-43
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_011655560.2 (uncharacterized protein LOC105435558 [Cucumis sativus] >KAE8648678.1 hypothetical protein Csa_008156 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. ExPASy TrEMBL
Match: A0A6J1K8V1 (uncharacterized protein LOC111493328 OS=Cucurbita maxima OX=3661 GN=LOC111493328 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of Carg19255 vs. ExPASy TrEMBL
Match: A0A6J1GZK6 (uncharacterized protein LOC111458584 OS=Cucurbita moschata OX=3662 GN=LOC111458584 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of Carg19255 vs. ExPASy TrEMBL
Match: A0A1S3BEY5 (uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. ExPASy TrEMBL
Match: A0A0A0KPV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. ExPASy TrEMBL
Match: A0A6J1DG38 (uncharacterized protein LOC111019780 OS=Momordica charantia OX=3673 GN=LOC111019780 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          MVP+VLTQLATGLSVLAGAVLVKSVMD KPMAG  PRCPSCNGTGRV CLCSRWSD D+G
Sbjct: 1  MVPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVACLCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSS 99
          CRTCSGSGRMFCSSCGG+GTGRPIPAQ+SVRRTN+P SS
Sbjct: 61 CRTCSGSGRMFCSSCGGTGTGRPIPAQLSVRRTNHPSSS 99

[Close]

BLAST of Carg19255 vs. TAIR 10
Match: AT5G43260.1 (chaperone protein dnaJ-related )

HSP 1 Score: 151.0 bits (380), Expect = 5.1e-37
Identity = 73/96 (76.04%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIV+TQLATG+SVLAGAV +KSVMD KPMAG  PRCP+CNGTGRV C CSRWSD D+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CR CSGSGR  CS+CGGSGTGRP+PAQI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

The following BLAST results are available for this feature:

BLAST of Carg19255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957100.1	3.5e-48	100.00	uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 unchar...	[more]
XP_023552719.1	2.3e-47	97.98	uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo]	[more]
XP_038892730.1	6.9e-44	95.00	uncharacterized protein LOC120081711 [Benincasa hispida]	[more]
XP_008446034.1	7.6e-43	92.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
XP_011655560.2	1.3e-42	92.00	uncharacterized protein LOC105435558 [Cucumis sativus] >KAE8648678.1 hypothetica...	[more]

BLAST of Carg19255 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8V1	1.7e-48	100.00	uncharacterized protein LOC111493328 OS=Cucurbita maxima OX=3661 GN=LOC111493328...	[more]
A0A6J1GZK6	1.7e-48	100.00	uncharacterized protein LOC111458584 OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]
A0A1S3BEY5	3.7e-43	92.00	uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=...	[more]
A0A0A0KPV9	1.2e-41	91.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1	[more]
A0A6J1DG38	4.5e-41	88.89	uncharacterized protein LOC111019780 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Carg19255 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43260.1	5.1e-37	76.04	chaperone protein dnaJ-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 2..94
None	No IPR available	PANTHER	PTHR34687	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19255-RA	Carg19255-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane