Carg19188 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19188
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription factor bHLH117
Location	Carg_Chr19: 8264777 .. 8265840 (-)
RNA-Seq Expression	Carg19188
Synteny	Carg19188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCATTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTTCCTTGGAGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGATGAATCCGTTGCAGATGGTGGAGCCGATGGTGCGAACATGTGAGGGTTTCCAGAACTTTTTTGTGCCGTACGAGTACAAACACTCGCCGGATTTAACCACTTCTGCTGCCGTGTCTCCTGCTGTTCAAATCCCTCGCAGCGCTTTGGCTCGACAGCGTCGTCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAACTACTGCCATGGGACAAAAAAATGGACATCGCTACAATGCTTGAAGAAGCGTGCAAGTACGTCAAGTTCCTTCAGGCACAACTCCTCGCGCTTCAATCCATGCCCCGTGAATCGGCCATTTCTAGTTATTCAAATAATCATTACATCACCGGTATGTTTGGTGGATTGGAGAGGCTGAATCGAAACCAACTATTGCAAGTTTTAGTTAACTCGCCGGTGGCTCAGACCATGCTTTGTTCTCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGCCTTATCCAGAAGATCGCGGAGAAACGAGTTCTGCTGCAGCAAATGTCGACATTCCGTCCCAAGCCCTAGTTTCCGATCGAGTTCCACCGTTCGTGATTCAGACCGACGGAACGGCAAGGCTGCGCGTCCGGTACTACAATATTTCTTTATGTGTTTGCGTTTTAGGTCATTAG

mRNA sequence

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCATTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTTCCTTGGAGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGATGAATCCGTTGCAGATGGTGGAGCCGATGGTGCGAACATGTGAGGGTTTCCAGAACTTTTTTGTGCCGTACGAGTACAAACACTCGCCGGATTTAACCACTTCTGCTGCCGTGTCTCCTGCTGTTCAAATCCCTCGCAGCGCTTTGGCTCGACAGCGTCGTCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAACTACTGCCATGGGACAAAAAAATGGACATCGCTACAATGCTTGAAGAAGCGTGCAAGTACGTCAAGTTCCTTCAGGCACAACTCCTCGCGCTTCAATCCATGCCCCGTGAATCGGCCATTTCTAGTTATTCAAATAATCATTACATCACCGACCATGCTTTGTTCTCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGCCTTATCCAGAAGATCGCGGAGAAACGAGTTCTGCTGCAGCAAATGTCGACATTCCGTCCCAAGCCCTAGTTTCCGATCGAGTTCCACCGTTCGTGATTCAGACCGACGGAACGGCAAGGCTGCGCGTCCGGTACTACAATATTTCTTTATGTGTTTGCGTTTTAGGTCATTAG

Coding sequence (CDS)

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCATTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTTCCTTGGAGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGATGAATCCGTTGCAGATGGTGGAGCCGATGGTGCGAACATGTGAGGGTTTCCAGAACTTTTTTGTGCCGTACGAGTACAAACACTCGCCGGATTTAACCACTTCTGCTGCCGTGTCTCCTGCTGTTCAAATCCCTCGCAGCGCTTTGGCTCGACAGCGTCGTCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAACTACTGCCATGGGACAAAAAAATGGACATCGCTACAATGCTTGAAGAAGCGTGCAAGTACGTCAAGTTCCTTCAGGCACAACTCCTCGCGCTTCAATCCATGCCCCGTGAATCGGCCATTTCTAGTTATTCAAATAATCATTACATCACCGACCATGCTTTGTTCTCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGCCTTATCCAGAAGATCGCGGAGAAACGAGTTCTGCTGCAGCAAATGTCGACATTCCGTCCCAAGCCCTAGTTTCCGATCGAGTTCCACCGTTCGTGATTCAGACCGACGGAACGGCAAGGCTGCGCGTCCGGTACTACAATATTTCTTTATGTGTTTGCGTTTTAGGTCATTAG

Protein sequence

METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDGMTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDLRSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPAVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMPRESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRVPPFVIQTDGTARLRVRYYNISLCVCVLGH

Homology

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BLAST of Carg19188 vs. NCBI nr
Match: KAG7011926.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 656.8 bits (1693), Expect = 1.0e-184
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300
           RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV
Sbjct: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300

Query: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 330
           PPFVIQTDGTARLRVRYYNISLCVCVLGH
Sbjct: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 329

[Close]

BLAST of Carg19188 vs. NCBI nr
Match: XP_022969174.1 (uncharacterized protein LOC111468250 [Cucurbita maxima])

HSP 1 Score: 620.9 bits (1600), Expect = 6.2e-174
Identity = 316/329 (96.05%), Postives = 317/329 (96.35%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           ME+SAGDD SSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   MESSAGDDVSSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEP SVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPTSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYK SPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKLSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300
           RESAISSYSNNHYIT      ELLRFLGRTVG YPEDRGE SSAAANVDIPSQ LVSDRV
Sbjct: 241 RESAISSYSNNHYIT------ELLRFLGRTVGAYPEDRGEKSSAAANVDIPSQTLVSDRV 300

Query: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 330
           PPFVIQTDGTARLRVRYYNISLCVCVLGH
Sbjct: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 323

[Close]

BLAST of Carg19188 vs. NCBI nr
Match: XP_022953002.1 (uncharacterized protein LOC111455517 [Cucurbita moschata])

HSP 1 Score: 600.5 bits (1547), Expect = 8.6e-168
Identity = 305/318 (95.91%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300
           RESAISSYSNNHYIT      ELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV
Sbjct: 241 RESAISSYSNNHYIT------ELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300

Query: 301 PPFVIQTDGTARLRVRYY 319
           PPFVIQTDGT +++   Y
Sbjct: 301 PPFVIQTDGTVKVQKNSY 312

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BLAST of Carg19188 vs. NCBI nr
Match: KAG6572315.1 (Transcription factor basic helix-loop-helix 117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 504.2 bits (1297), Expect = 8.4e-139
Identity = 254/255 (99.61%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYIT 256
           RESAISSYSNN YIT
Sbjct: 241 RESAISSYSNNQYIT 255

[Close]

BLAST of Carg19188 vs. NCBI nr
Match: XP_023554551.1 (transcription factor bHLH117-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.5 bits (1290), Expect = 5.5e-138
Identity = 253/255 (99.22%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQES+FLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESSFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYK SPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKLSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYIT 256
           RESAISSYSNNHYIT
Sbjct: 241 RESAISSYSNNHYIT 255

[Close]

BLAST of Carg19188 vs. ExPASy Swiss-Prot
Match: Q9LRJ4 (Transcription factor bHLH117 OS=Arabidopsis thaliana OX=3702 GN=BHLH117 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-11
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 96  YEQTETQESTFLFHD------STSFPHLPDLRSLEQCSSSFNKRARVDSVMNPLQM-VEP 155
           Y+ T TQ    LFH+      +T F HLPDL+S             +D+V  P  M + P
Sbjct: 63  YDSTHTQ----LFHNDDTTTTTTPFLHLPDLKS-------------IDAVEEPTTMKLFP 122

Query: 156 MVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPAVQIPRSALARQRRQKLSDKTRCLQKLLP 215
            +          +P   +   + T+S+  S +           +R+K+SDK R L+KL+P
Sbjct: 123 SLSPP-------LPAAKRQKLNSTSSSTTSGSPTASNDGGIITKRRKISDKIRSLEKLMP 182

Query: 216 WDKKMDIATMLEEACKYVKFLQAQLLALQSMPRESAISS 248
           W++KM++A  LEE+ KY+KFLQ+Q+ +L+ MP ES  ++
Sbjct: 183 WERKMNLAMTLEESHKYIKFLQSQIASLRWMPLESVYNT 197

[Close]

BLAST of Carg19188 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.2e-08
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSM 240
           P++  ARQRR+++S+K R LQ L+P   KMD A+ML+EA  Y+KFL+AQ+ AL+++
Sbjct: 279 PQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334

[Close]

BLAST of Carg19188 vs. ExPASy Swiss-Prot
Match: A0A0P0WQ90 (Transcription factor LATE FLOWERING OS=Oryza sativa subsp. japonica OX=39947 GN=LF PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.4e-08
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMPRES 243
           P++  AR RR+++S++ R LQ+L+P   KMD ATML+EA  Y+KFL++QL AL+++   +
Sbjct: 307 PQTVAARLRRERVSERLRVLQRLVPGGSKMDTATMLDEAASYLKFLKSQLEALETLGNGN 366

Query: 244 AISSYSNNHYIT 256
              +  ++ Y T
Sbjct: 367 GNGNLLHHGYYT 378

[Close]

BLAST of Carg19188 vs. ExPASy Swiss-Prot
Match: Q7XHI9 (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-07
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 239
           P+S  AR+RR++++++ R LQ L+P   K+DI+TMLEEA +YVKFLQ Q+  L S
Sbjct: 247 PQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 301

[Close]

BLAST of Carg19188 vs. ExPASy Swiss-Prot
Match: Q84WK0 (Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-07
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 239
           P+S  AR+RR++++++ R LQ L+P   K+DI+TMLEEA  YVKFLQ Q+  L S
Sbjct: 276 PQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 330

[Close]

BLAST of Carg19188 vs. ExPASy TrEMBL
Match: A0A6J1I1T2 (uncharacterized protein LOC111468250 OS=Cucurbita maxima OX=3661 GN=LOC111468250 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 3.0e-174
Identity = 316/329 (96.05%), Postives = 317/329 (96.35%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           ME+SAGDD SSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   MESSAGDDVSSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEP SVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPTSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYK SPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKLSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300
           RESAISSYSNNHYIT      ELLRFLGRTVG YPEDRGE SSAAANVDIPSQ LVSDRV
Sbjct: 241 RESAISSYSNNHYIT------ELLRFLGRTVGAYPEDRGEKSSAAANVDIPSQTLVSDRV 300

Query: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 330
           PPFVIQTDGTARLRVRYYNISLCVCVLGH
Sbjct: 301 PPFVIQTDGTARLRVRYYNISLCVCVLGH 323

[Close]

BLAST of Carg19188 vs. ExPASy TrEMBL
Match: A0A6J1GLZ9 (uncharacterized protein LOC111455517 OS=Cucurbita moschata OX=3662 GN=LOC111455517 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 4.2e-168
Identity = 305/318 (95.91%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG
Sbjct: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
           MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL
Sbjct: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180
           RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA
Sbjct: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPA 180

Query: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240
           VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP
Sbjct: 181 VQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSMP 240

Query: 241 RESAISSYSNNHYITDHALFSELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300
           RESAISSYSNNHYIT      ELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV
Sbjct: 241 RESAISSYSNNHYIT------ELLRFLGRTVGPYPEDRGETSSAAANVDIPSQALVSDRV 300

Query: 301 PPFVIQTDGTARLRVRYY 319
           PPFVIQTDGT +++   Y
Sbjct: 301 PPFVIQTDGTVKVQKNSY 312

[Close]

BLAST of Carg19188 vs. ExPASy TrEMBL
Match: A0A5A7TAD0 (Transcription factor bHLH117 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003960 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 5.0e-105
Identity = 206/258 (79.84%), Postives = 219/258 (84.88%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           ME+S GDDASS+VWDDACF+AMFS VS QSFLA G+ S       FGG Y+AD+LTFPD 
Sbjct: 1   MESSPGDDASSSVWDDACFNAMFSDVSFQSFLAAGNHSQ------FGGGYIADALTFPDA 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
            TS YPQ S+NF AE T SSDGPFFKLPKSEPM VYE TET+E  F+ HDSTSFPHLPDL
Sbjct: 61  TTSFYPQPSTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPY-EYKHSPDL-TTSAAVS 180
           RSLEQCSSSFNKRARVDS+ NPLQMVEPMVR CEGFQNFFVPY +YK S DL TTSA  S
Sbjct: 121 RSLEQCSSSFNKRARVDSMSNPLQMVEPMVRGCEGFQNFFVPYGQYKTSSDLITTSATAS 180

Query: 181 PAVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240
           P VQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS
Sbjct: 181 PTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240

Query: 241 MPRESAISSY-SNNHYIT 256
           MP ESA+SSY S+N YIT
Sbjct: 241 MPCESALSSYNSSNPYIT 252

[Close]

BLAST of Carg19188 vs. ExPASy TrEMBL
Match: A0A1S3C0Y6 (transcription factor bHLH117 OS=Cucumis melo OX=3656 GN=LOC103495566 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 1.2e-103
Identity = 205/258 (79.46%), Postives = 218/258 (84.50%), Query Frame = 0


Query: 1   METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDG 60
           ME+S GDDASS+VWDDACF+AMFS VS QSFLA G+ S       FGG Y+AD+LTFPD 
Sbjct: 1   MESSPGDDASSSVWDDACFNAMFSDVSFQSFLAAGNHSQ------FGGGYIADALTFPDA 60

Query: 61  MTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDL 120
            TS YPQ S+NF AE T SSDGPFFKLPKSEPM VYE TET+E  F+ HDSTSFPHLPDL
Sbjct: 61  TTSFYPQPSTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHLPDL 120

Query: 121 RSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPY-EYKHSPDL-TTSAAVS 180
           RSLEQ SSSFNKRARVDS+ NPLQMVEPMVR CEGFQNFFVPY +YK S DL TTSA  S
Sbjct: 121 RSLEQRSSSFNKRARVDSMSNPLQMVEPMVRGCEGFQNFFVPYGQYKTSSDLITTSATAS 180

Query: 181 PAVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240
           P VQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS
Sbjct: 181 PTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240

Query: 241 MPRESAISSY-SNNHYIT 256
           MP ESA+SSY S+N YIT
Sbjct: 241 MPCESALSSYNSSNPYIT 252

[Close]

BLAST of Carg19188 vs. ExPASy TrEMBL
Match: A0A0A0K6W7 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044910 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 202/258 (78.29%), Postives = 218/258 (84.50%), Query Frame = 0


Query: 1   METSAGDDASSTVW-DDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPD 60
           METS GDDASS+VW DDACF+AMFS VS QSFLA G+ S       FGG Y+AD+LTFP+
Sbjct: 1   METSPGDDASSSVWDDDACFNAMFSDVSFQSFLAAGNHSQ------FGGGYIADALTFPN 60

Query: 61  GMTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPD 120
             TS YPQ ++NF AE T SSDGPFFKLPKSEPM VYE TET+E  F+ HDSTSFPHLPD
Sbjct: 61  PTTSFYPQPTTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHLPD 120

Query: 121 LRSLEQCSSSFNKRARVDSVMNPLQMVEPMVRTCEGFQNFFVPYEYKHSPDL-TTSAAVS 180
           LRSLEQCSSS NKRARVDS+ NPLQM+EPMVR CEGFQ+FFVPY+YK S DL T SA  S
Sbjct: 121 LRSLEQCSSSLNKRARVDSMSNPLQMMEPMVRGCEGFQSFFVPYQYKISSDLITASATAS 180

Query: 181 PAVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240
           P VQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS
Sbjct: 181 PTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 240

Query: 241 MPRESAISSY-SNNHYIT 256
           MP ESAISSY S+N+YIT
Sbjct: 241 MPCESAISSYNSSNNYIT 252

[Close]

BLAST of Carg19188 vs. TAIR 10
Match: AT3G22100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-13
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 96  YEQTETQESTFLFHD------STSFPHLPDLRSLEQCSSSFNKRARVDSVMNPLQM-VEP 155
           Y+ T TQ    LFH+      +T F HLPDL+S             +D+V  P  M + P
Sbjct: 63  YDSTHTQ----LFHNDDTTTTTTPFLHLPDLKS-------------IDAVEEPTTMKLFP 122

Query: 156 MVRTCEGFQNFFVPYEYKHSPDLTTSAAVSPAVQIPRSALARQRRQKLSDKTRCLQKLLP 215
            +          +P   +   + T+S+  S +           +R+K+SDK R L+KL+P
Sbjct: 123 SLSPP-------LPAAKRQKLNSTSSSTTSGSPTASNDGGIITKRRKISDKIRSLEKLMP 182

Query: 216 WDKKMDIATMLEEACKYVKFLQAQLLALQSMPRESAISS 248
           W++KM++A  LEE+ KY+KFLQ+Q+ +L+ MP ES  ++
Sbjct: 183 WERKMNLAMTLEESHKYIKFLQSQIASLRWMPLESVYNT 197

[Close]

BLAST of Carg19188 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 5.1e-09
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQSM 240
           P++  ARQRR+++S+K R LQ L+P   KMD A+ML+EA  Y+KFL+AQ+ AL+++
Sbjct: 279 PQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334

[Close]

BLAST of Carg19188 vs. TAIR 10
Match: AT2G14760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 4.3e-08
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 239
           P+S  AR+RR++++++ R LQ L+P   K+DI+TMLEEA +YVKFLQ Q+  L S
Sbjct: 247 PQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 301

[Close]

BLAST of Carg19188 vs. TAIR 10
Match: AT1G27740.1 (root hair defective 6-like 4 )

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-08
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 239
           P+S  AR+RR+K++++ + LQ L+P   K+DI+TMLEEA  YVKFLQ Q+  L S
Sbjct: 177 PQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 231

[Close]

BLAST of Carg19188 vs. TAIR 10
Match: AT4G33880.1 (ROOT HAIR DEFECTIVE 6-LIKE 2 )

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-08
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 184 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLALQS 239
           P+S  AR+RR++++++ R LQ L+P   K+DI+TMLEEA  YVKFLQ Q+  L S
Sbjct: 276 PQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 330

The following BLAST results are available for this feature:

BLAST of Carg19188 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011926.1	1.0e-184	100.00	Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969174.1	6.2e-174	96.05	uncharacterized protein LOC111468250 [Cucurbita maxima]	[more]
XP_022953002.1	8.6e-168	95.91	uncharacterized protein LOC111455517 [Cucurbita moschata]	[more]
KAG6572315.1	8.4e-139	99.61	Transcription factor basic helix-loop-helix 117, partial [Cucurbita argyrosperma...	[more]
XP_023554551.1	5.5e-138	99.22	transcription factor bHLH117-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRJ4	1.1e-11	33.33	Transcription factor bHLH117 OS=Arabidopsis thaliana OX=3702 GN=BHLH117 PE=2 SV=...	[more]
Q8S3D2	7.2e-08	51.79	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]
A0A0P0WQ90	9.4e-08	41.67	Transcription factor LATE FLOWERING OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q7XHI9	6.1e-07	52.73	Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1	[more]
Q84WK0	8.0e-07	52.73	Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1	[more]

BLAST of Carg19188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1T2	3.0e-174	96.05	uncharacterized protein LOC111468250 OS=Cucurbita maxima OX=3661 GN=LOC111468250...	[more]
A0A6J1GLZ9	4.2e-168	95.91	uncharacterized protein LOC111455517 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A5A7TAD0	5.0e-105	79.84	Transcription factor bHLH117 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0Y6	1.2e-103	79.46	transcription factor bHLH117 OS=Cucumis melo OX=3656 GN=LOC103495566 PE=4 SV=1	[more]
A0A0A0K6W7	1.4e-102	78.29	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044910 PE=4 S...	[more]

BLAST of Carg19188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22100.1	7.6e-13	33.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	5.1e-09	51.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G14760.1	4.3e-08	52.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27740.1	5.7e-08	52.73	root hair defective 6-like 4	[more]
AT4G33880.1	5.7e-08	52.73	ROOT HAIR DEFECTIVE 6-LIKE 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 186..235 e-value: 3.7E-9 score: 46.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 187..230 e-value: 1.6E-5 score: 24.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 180..229 score: 13.274576
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 183..248 e-value: 4.7E-9 score: 38.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 182..238
None	No IPR available	PANTHER	PTHR45914:SF24	TRANSCRIPTION FACTOR BHLH117	coord: 62..253
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 62..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19188-RA	Carg19188-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity