Carg19180 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19180
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger CCCH domain-containing protein 40-like isoform X1
Location	Carg_Chr19: 8238007 .. 8243484 (+)
RNA-Seq Expression	Carg19180
Synteny	Carg19180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACTATTTTTGCATATTTTCTGATTATTGGCAATCTTTAGAAGCGGATTCTATTGTCGCAACTACTCTCCAATTCGGTTCTACATTTATTCTGTCTAATTTGTCTGCAAATACAAACGGCGATTACTGCGACTTCGTAAATATACTTCTTCTCCGTTATTGTTCATGTTCATCCATGATGATTGGGCGCAAACTCTTCAAAACAAAGTTATGCGTTCTTTATCAGAAGGGACACTGTTCTCGCCCAAGTTGCTCGTTCGCTCACGGGAACGCTGAACTCAGGCGATTTGCTGGTGCTTCTTCCGGTAATTTACCCTTTATATCTCTAATTTTTGTGATATGTTCTTTATGTGGGGCTTAGGTTTGATGAAATGGAAGTTTGTAGTCGCTAAAGTACATATGTGTCTGCCAATTGTTCTTGTATGTGATTCTTTTCTCGATCTCCCAATCTTGTTGGGATTGGTTTTGGATATTTGTTGCTGACTATTCTTACATTCAACGCTAAACAGTGGTGTTTCTTTCTTCCATTATGGTCTTCTTGATATAGTCAATGCGGAGACTTAATTTACAGCATTTTTTATCCTATCAGTGTCTGGCTTCCGTACTCTTTCTTCTTTCTGTTCATGATTCTTGTTGTATGCCATTTTTGTAATGTGTATGTTTTATTTCTTAGTTATACGTAATATTTCCCGAACGCTCCTTATGGTAAAGTATATATGTCTGCTGTCTTATAAAAAAAGAAACTATTCTTTCTGTTGTGCATGAATAGCTATACGAACACAATTTCCCTCATTTATGCTCTGTGGTTTGCGTATGTTGTTGGTCTATCTTCGATATTTAATTGGTTCTGCACAAGTCGTCACATGAGACACCACGCCTCTACCAATGGATATTTATAATAGATGAGTTGAATGATTCCAATAATGCGAGATATAAAAATTTCTTCGAACTTGCATGGTCACTGAAGTGGCTAGTCAAAAATATCATCCGGATCAGATTTTTTTCATTGGAATGGATATGGTGGATTTTTCTTTATGTGAGCTGCCTATGATATATCCCTGGAGATGTTTATGGCTCTTGTGCTGCATCAGCTAAACCAGAAAGTACTCATTGAAGATTATAATTGTTTTCCTTAATTTATATATCTCCCACTGCCTTTGTTTAATTATCCAATTCCGATCTTCTGGGTTACGCTATAGTGGTTCATGGGGCTTCACTTTTATTAGGAGAGGTTCTTCATTGGTTTATGCCTCCTGAGTATGCCAAATGGACTTCCTGTTGGAGTAATGCAATTTTAATGGGAATTGCATGAAGAATCGAAATTGAGAATCTATGTCATTGGACTGTTCTTGTATCATTATGTGGAATCCCAGAGATATCTTCTATTTGGATCAAAGTTATGCGAACTTACTGTTCATCGAGGTCACAGGAGTATAATCCTGGGCATGGATTTTTCATTATCTTTTCGTTATTTCTATTGATCTTTTGGAACTGGCATGGCGGCACTACTACTGTTCCTTATTTTGTTTCTCATCTTTTCCATGTAATGGTAAGATAAGCCTTGTATGATCTTCATTGCTTCATTAGCCATTCTTTAGAAAGAATATCTGAAATTGACTAAACTTGTTAAATTTTCCCGTCTGTGCAGGTAGACAGGAATATAGAGAAAATGATTTACGGCATAAGCTTGACAGCAGGCACTCTCCCCTGCAGGAAAGGGATTCCAGAGGGCGACATGGACCTCGTGGTAGTAAAGTCATATGTTTTTCTTTTTGTTTTTCTCTCTCACCTCCCAAGTAGAGCCTATGCTGCAATCCTCAGTTTATATGATGTTTCCTTTTTACATTTTCTAATCAAGGAATGTAAGAAGCTAGGTTCTTAACGCACATGCACACACATAGTTTAAAAGAATATGTGGACTACATATTTTTTTACATGTTGTAATAGCAAAGTTCTTTCCTGATTTCTCTTATCTGAATTGAAATTGCAGAGTATAGCTCATCCTGGTCACTTGAACGAAATAGGTAAATTGTCACAATTTTTATTGTGTTGTATTTTCAAATCCATTAGTTCAAGCGAAGGAAAGGTAGGATTTGATCCTGTGATGGAAATATCTTGTGAGGGATAAATTTTTATTTAAAGTCATCACGAGGTATATTTATGAGATTTTTCTCATTCGAGAGTGGTCATATGATATCAACGACTTTGTTCCTACCAGAGTACTTCCAGGTCCTTGTATATCTTTGTTCTTATTTTAATAAGAGAGTACTTCCAGTTCCTGATTCCATTATTTATTGAGCCATACTTGAGGTATAAAGTTTCTGTTACTTTTAGCCTTTAGGTTTGAAGGTCTTATGTGCCACGATATTAGTATGATCTGAGTTCATTCTTCAACACACGATTATCTTTTCATAAGTACTGGCATATTAGTAATTCGCTGGTGGATACTTTGAAATGGTACACATTCTTGTTTCAGTGACCATAAAAGAAGAAAAAAGGATCATGGGGATTCCCGTACTGATTATGCTGGAAATTTGAGGATTACAGATAGGAGTGAAGAACGAGATCGGGAAGGGAAAATCTCATCTTCTTCTAGAGACACTCTTGAGGGGCAGGTATATAAAACAATTGTTTTATAACTTGACCTTCTTTTTATTAGAAACTGCTACTCTGGAATCTTGGTTGATCATCTTTGAATTACACAGTTAAACAAGATGCAGGCTGATATTGAGATGGCTGAGCACCACAGACACCAAGCTGAAGTTAGTATTATCTCTTTCTTTTAGTTGCTTTCTGCCTCTAATTTTGTGCAGGCAATAGGCAATAGGCAATAGGTCATGCATATTTCCTTTTTTCAATTGTCATTAACATACCAGGTCATCCCCTTGGTTAGTGTTAGCCTGTAGGTGAATGAGTGAGCTTGTTGGTCAGTTTTGGGATTGAAGTATTCAATAGAGGGTTAGGGATTTGTAAGGTAGGTAGATTATGAAAACAGTTTTGAGGAGAGAACTCAGCATCTTGAATGCATAGTAAATATTTGTAATTCCTATTTAGTTTCAGTAATGTGGATTCATACCTCCCAGAGATTATTTTAATGTCTAGTAGTTGCAAACATTGTAATCAGGTTGACCTAAGATTGGTTATTAGAGCTCGTAGTTAGTCCCTTAATTCTTCTGATGGTTAAAAGTGAAACTCTATTAGAAGCGAAGGTACTTTTAGCTGTCTCAAGTGTCATATGTTTTGATTTGTATTTTGATTGAGCAATATTTTCTGGATAATGTATATTTCAATCTATCGATTAAATGATTCTATAAGTATATATTGAAGACATTAGCAATTTTTTCTTTGTTTTTGAAGGTCTACCTGGACGAGAAAATCCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTATATAACGAGAGGGAGGAGTGTCGAAGGTACAAGTAATTGTCTTTTTGATACATTATTCGTTGTCATGTTTCCTGCTGAAGATTGACACCAGCTTCATCTTCCTATTTTTCTTGGATCTTTAATATTCAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAGGGATACAAGATGAACTGAAGCGGCAAGTATACTTGTCCAATTCTTTTGATTGCATTTTTTAATGCCGATAATTTTCAGGAAATTATGGTAACTTTTCTAAACGTGTAGGTCGCAATTCCGACTTCAACAGTTGGGAGATCAGCTGGGGTCAGATGTAAATAAAATTGGTGCCAATGAAGAAGACTCAAGTGTCAACATTGTAAGCGATGGGGAGGACCCCCGTTACCATGCAGCCGGTCCTCTTCATCACCTGCATAAGGACACTTCTGCAAGCAAGAGGAAGTTGCATGTTGATCAAGATATTGCGGGAAACTCAAAACGAGGTGCCTTTTGAAACTTAATAATTTCTTCATGTGGATGTGTCATTTAAAAAGATATTATATGGTTTGAAATCTCTTAATATGTCCTCAGCCCTAGTAAGCTCTCATATTTTGAAGATGTTTATATGTTTTTTTCTTTATTGTGTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGTGGGGGTGGGGGGGTTAAGGTGGGCTGTGATAATTTTTAATTATGATGTTCTTCATGCTGGAGCCTTTTTTTCCCTTCATACTTATTGTGGGTGCATTCTACATTAGCTGATTTACACAAAGGAAGTAAAGAGGCAGTGGGAAGATTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCGATGTATAGCAAAATTGAGGCAGTTCGCAATGAAAACAATGATTATATACCTAAAGCAAATGAAAGCAGGCAGAAGAGGGGAAAGGCATCTAATAGTGTTTCTACTGCAGATAAGGTGACTTCGATAGTTTTTCTATTCAATTTTATTTGTTTGTTCAATTTACTATGTGCTGCGCTTGGATGTCTGATTACTTGTGGCATATAGAGTACAAAGTCTATAGGTTATGGTAGCTTGAAGTGTGCTACCATCTGTTTGATTGTTCTTTCATAGTTTTTTAACATCGTTGTTTTCTAGACCTAGGATAACATCCCCCCTCCTCTCTCTGTCTTGCAATGTCAATTTGAAGCCTTTCGTACATTGTAAATTCTATTGTTTGTTCATGCACCTAATTTTCAACTAAGATTCGCAGGTTAGGAGTCTAGATGCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCGGTTAATGAGGAAGTTGATATTGAATTGGAAGTTAACAATGAAGTGAGCGATCGGAGGGAAAGTACTAAGGAGGCTGCGTCGGGCAGTGCGCCTCTCCTGCCCCCTCCACCATCTCCAATCCATGAAATCAACCATTCAAGGGTTAGCAAGTTCTCAAAATTTCACTCCTCTTCAGTTTTGTCTTGCAAAATTGTCGATTACTTAAGAAAGTTCACCTTTCATTTTTCTCGTTCAATCTATAGATATAGTTGGAACTTTTCTACTCCCCAAATCAAATCAAATTTCTATCGTGAACATGAAAATGTTGAACAAAAAAAACATAGAAAGCCATTAGTCTTATTAAATATGGTTTTGTTCTTTCAAAAAAGAATAATAATACCTTGTCATCTCTTGCTTATAGCACCTAACATGGGATTTGGATTGCAGTATGAGGGTGAAGATCAAAATATAGATGTGGAGGTGGTTGATGATGAAAGCGCAGGGTTGGACGATGCTTAACTTTGGATCCTGCTGCTTTAGAGGTTAGAACAATTGTTAGACCTTAGTCTAGTGAAATTGGTTTCGTGGAGTTCGCAGGATGGAGTTTTTATGGGTTCTTATTAAACTCGTTTGTAATTTCCAGTTTTATTTGCATATCAGATATCGGCGACCTCCCAACATTTTACTTTTTTTATGGCAGATTTTGATTGTCATTTTCATATTACCTATTAGACAATTATA

mRNA sequence

TGTACTATTTTTGCATATTTTCTGATTATTGGCAATCTTTAGAAGCGGATTCTATTGTCGCAACTACTCTCCAATTCGGTTCTACATTTATTCTGTCTAATTTGTCTGCAAATACAAACGGCGATTACTGCGACTTCGTAAATATACTTCTTCTCCGTTATTGTTCATGTTCATCCATGATGATTGGGCGCAAACTCTTCAAAACAAAGTTATGCGTTCTTTATCAGAAGGGACACTGTTCTCGCCCAAGTTGCTCGTTCGCTCACGGGAACGCTGAACTCAGGCGATTTGCTGGTGCTTCTTCCGCTGCCTATGATATATCCCTGGAGATGTTTATGGCTCTTGTGCTGCATCAGCTAAACCAGAAAGAGAGGTTCTTCATTGGTTTATGCCTCCTGAGTATGCCAAATGGACTTCCTGTTGGAGAGTATAATCCTGGGCATGGATTTTTCATTATCTTTTCGTTATTTCTATTGATCTTTTGGAACTGGCATGGCGGCACTACTACTGTTCCTTATTTTGTTTCTCATCTTTTCCATGTAATGGTAGACAGGAATATAGAGAAAATGATTTACGGCATAAGCTTGACAGCAGGCACTCTCCCCTGCAGGAAAGGGATTCCAGAGGGCGACATGGACCTCGTGGTAGTAAATGACCATAAAAGAAGAAAAAAGGATCATGGGGATTCCCGTACTGATTATGCTGGAAATTTGAGGATTACAGATAGGAGTGAAGAACGAGATCGGGAAGGGAAAATCTCATCTTCTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGGCTGATATTGAGATGGCTGAGCACCACAGACACCAAGCTGAAGTCTACCTGGACGAGAAAATCCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTATATAACGAGAGGGAGGAGTGTCGAAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAGGGATACAAGATGAACTGAAGCGGCAATTGGGAGATCAGCTGGGGTCAGATGTAAATAAAATTGGTGCCAATGAAGAAGACTCAAGTGTCAACATTGTAAGCGATGGGGAGGACCCCCGTTACCATGCAGCCGGTCCTCTTCATCACCTGCATAAGGACACTTCTGCAAGCAAGAGGAAGTTGCATGTTGATCAAGATATTGCGGGAAACTCAAAACGAGCTGATTTACACAAAGGAAGTAAAGAGGCAGTGGGAAGATTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCGATGTATAGCAAAATTGAGGCAGTTCGCAATGAAAACAATGATTATATACCTAAAGCAAATGAAAGCAGGCAGAAGAGGGGAAAGGCATCTAATAGTGTTTCTACTGCAGATAAGGTTAGGAGTCTAGATGCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCGGTTAATGAGGAAGTTGATATTGAATTGGAAGTTAACAATGAAGTGAGCGATCGGAGGGAAAGTACTAAGGAGGCTGCGTCGGGCAGTGCGCCTCTCCTGCCCCCTCCACCATCTCCAATCCATGAAATCAACCATTCAAGGTATGAGGGTGAAGATCAAAATATAGATGTGGAGGTGGTTGATGATGAAAGCGCAGGGTTGGACGATGCTTAACTTTGGATCCTGCTGCTTTAGAGGTTAGAACAATTGTTAGACCTTAGTCTAGTGAAATTGGTTTCGTGGAGTTCGCAGGATGGAGTTTTTATGGGTTCTTATTAAACTCGTTTGTAATTTCCAGTTTTATTTGCATATCAGATATCGGCGACCTCCCAACATTTTACTTTTTTTATGGCAGATTTTGATTGTCATTTTCATATTACCTATTAGACAATTATA

Coding sequence (CDS)

ATGATGATTGGGCGCAAACTCTTCAAAACAAAGTTATGCGTTCTTTATCAGAAGGGACACTGTTCTCGCCCAAGTTGCTCGTTCGCTCACGGGAACGCTGAACTCAGGCGATTTGCTGGTGCTTCTTCCGCTGCCTATGATATATCCCTGGAGATGTTTATGGCTCTTGTGCTGCATCAGCTAAACCAGAAAGAGAGGTTCTTCATTGGTTTATGCCTCCTGAGTATGCCAAATGGACTTCCTGTTGGAGAGTATAATCCTGGGCATGGATTTTTCATTATCTTTTCGTTATTTCTATTGATCTTTTGGAACTGGCATGGCGGCACTACTACTGTTCCTTATTTTGTTTCTCATCTTTTCCATGTAATGGTAGACAGGAATATAGAGAAAATGATTTACGGCATAAGCTTGACAGCAGGCACTCTCCCCTGCAGGAAAGGGATTCCAGAGGGCGACATGGACCTCGTGGTAGTAAATGACCATAAAAGAAGAAAAAAGGATCATGGGGATTCCCGTACTGATTATGCTGGAAATTTGAGGATTACAGATAGGAGTGAAGAACGAGATCGGGAAGGGAAAATCTCATCTTCTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGGCTGATATTGAGATGGCTGAGCACCACAGACACCAAGCTGAAGTCTACCTGGACGAGAAAATCCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTATATAACGAGAGGGAGGAGTGTCGAAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAGGGATACAAGATGAACTGAAGCGGCAATTGGGAGATCAGCTGGGGTCAGATGTAAATAAAATTGGTGCCAATGAAGAAGACTCAAGTGTCAACATTGTAAGCGATGGGGAGGACCCCCGTTACCATGCAGCCGGTCCTCTTCATCACCTGCATAAGGACACTTCTGCAAGCAAGAGGAAGTTGCATGTTGATCAAGATATTGCGGGAAACTCAAAACGAGCTGATTTACACAAAGGAAGTAAAGAGGCAGTGGGAAGATTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCGATGTATAGCAAAATTGAGGCAGTTCGCAATGAAAACAATGATTATATACCTAAAGCAAATGAAAGCAGGCAGAAGAGGGGAAAGGCATCTAATAGTGTTTCTACTGCAGATAAGGTTAGGAGTCTAGATGCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCGGTTAATGAGGAAGTTGATATTGAATTGGAAGTTAACAATGAAGTGAGCGATCGGAGGGAAAGTACTAAGGAGGCTGCGTCGGGCAGTGCGCCTCTCCTGCCCCCTCCACCATCTCCAATCCATGAAATCAACCATTCAAGGTATGAGGGTGAAGATCAAAATATAGATGTGGAGGTGGTTGATGATGAAAGCGCAGGGTTGGACGATGCTTAA

Protein sequence

MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQLNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLFHVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLRITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSRIQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRQLGDQLGSDVNKIGANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSKEAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRSLDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEINHSRYEGEDQNIDVEVVDDESAGLDDA

Homology

[Close]

BLAST of Carg19180 vs. NCBI nr
Match: KAG7011918.1 (Zinc finger CCCH domain-containing protein 13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 979.2 bits (2530), Expect = 1.4e-281
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF
Sbjct: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
           HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRQLGDQLGSDVNKIGANEED 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRQLGDQLGSDVNKIGANEED
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRQLGDQLGSDVNKIGANEED 300

Query: 301 SSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSKEAVGRL 360
           SSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSKEAVGRL
Sbjct: 301 SSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSKEAVGRL 360

Query: 361 RRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRSLDAGVV 420
           RRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRSLDAGVV
Sbjct: 361 RRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRSLDAGVV 420

Query: 421 VPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEINHSRYEG 480
           VPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEINHSRYEG
Sbjct: 421 VPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEINHSRYEG 480

Query: 481 EDQNIDVEVVDDESAGLDDA 501
           EDQNIDVEVVDDESAGLDDA
Sbjct: 481 EDQNIDVEVVDDESAGLDDA 500

[Close]

BLAST of Carg19180 vs. NCBI nr
Match: KAG6572306.1 (Zinc finger CCCH domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 694.1 bits (1790), Expect = 8.7e-196
Identity = 392/506 (77.47%), Postives = 403/506 (79.64%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P   S  +
Sbjct: 61  LDSRH------------SPLQERDSRGRHG----------------------PREYSSSW 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPGYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 435

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLDDA
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 435

[Close]

BLAST of Carg19180 vs. NCBI nr
Match: XP_022952135.1 (zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 692.6 bits (1786), Expect = 2.5e-195
Identity = 391/506 (77.27%), Postives = 402/506 (79.45%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P + S   
Sbjct: 61  LDNRH------------SPLQERDSRGRHG----------------------PQYSSSW- 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPGYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP SPIHEIN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPQSPIHEIN 434

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLDDA
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 434

[Close]

BLAST of Carg19180 vs. NCBI nr
Match: XP_022952134.1 (zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 691.0 bits (1782), Expect = 7.4e-195
Identity = 391/506 (77.27%), Postives = 402/506 (79.45%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P   S  +
Sbjct: 61  LDNRH------------SPLQERDSRGRHG----------------------PREYSSSW 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPGYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP SPIHEIN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPQSPIHEIN 435

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLDDA
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 435

[Close]

BLAST of Carg19180 vs. NCBI nr
Match: XP_022969100.1 (zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 679.9 bits (1753), Expect = 1.7e-191
Identity = 383/506 (75.69%), Postives = 399/506 (78.85%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P + S   
Sbjct: 61  LDSRH------------SPLQERDSRGRHG----------------------PQYSSSW- 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           I DRSEERDREGKISSSSRDTLE QLNKMQADIEMAEHHRHQAEVYL+EKIQEVDSLTSR
Sbjct: 181 IIDRSEERDREGKISSSSRDTLEEQLNKMQADIEMAEHHRHQAEVYLEEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIA NSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPSYHAAGPLHHLHKDTSASKRKLHVDQDIAANSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKS+YSKIEA+RNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSVYSKIEAIRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGS PLLPPPPSPIH+IN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSVPLLPPPPSPIHKIN 434

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLD+A
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDNA 434

[Close]

BLAST of Carg19180 vs. ExPASy Swiss-Prot
Match: Q93XW7 (Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=At3g21810 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.2e-34
Identity = 152/514 (29.57%), Postives = 236/514 (45.91%), Query Frame = 0


Query: 2   MIGRKLFKTKLCVLYQK-GHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 61
           M G  ++KTKLC+L+ K G CSRP+C+FAHGNAELRR   +S      +++  +    H 
Sbjct: 1   MSGSSMYKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHN 60

Query: 62  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 121
           ++   R  +G             +++P                                 
Sbjct: 61  MDSDLRDRLG------------RQFSPER------------------------------- 120

Query: 122 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 181
              +DR            +G    R    +  M      D   R+    D R DYAG L+
Sbjct: 121 RPSLDR------------SGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLK 180

Query: 182 ITDRSEERDREGKIS-SSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTS 241
           + +R E+R  +G+       + LE QL  ++ D++M    + + E  ++ K  EVD LTS
Sbjct: 181 VGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTS 240

Query: 242 RIQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNK 301
           RIQELE+QL  E++ECRRI S  KKFVK +NR+   QD+LKR      +LG+QL + +  
Sbjct: 241 RIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLAG 300

Query: 302 IGANEEDSSVNIVSDGEDPRYH---AAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADL- 361
              N  D  ++IVSD E    +   A  P + L   +S S++K +VDQ          L 
Sbjct: 301 SEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTKEPVEDGLI 360

Query: 362 HKGSKEAV-GRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKAN--ESRQKRGKASNSV 421
            +G +E V    +R   WN   +KS YS+ E+    + D I +++  E   KR + S   
Sbjct: 361 GRGEEEKVENEKKRPPCWNMLSSKS-YSEEESGAWNDEDTINRSSSKEDNWKRRRFSIGT 420

Query: 422 STADKVRSLDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP 481
           S  DK        V+  TSMAA              ++V++  E   EAA+GS  +  PP
Sbjct: 421 SATDK--------VILSTSMAAREF-----------DDVAESEEENPEAANGSPLISLPP 436

Query: 482 PSPIHEINHSRYEGEDQNIDVEVVDDESAGLDDA 501
           P P  + +  R   ++ +++ +V++ + A  DD+
Sbjct: 481 PPPFRDAHVQR---DEDDVNGDVMEQKKAYDDDS 436

[Close]

BLAST of Carg19180 vs. ExPASy Swiss-Prot
Match: Q6H7U2 (Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0161200 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.9e-32
Identity = 137/499 (27.45%), Postives = 220/499 (44.09%), Query Frame = 0


Query: 8   FKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSA------AYDISLEMFMALVLHQL 67
           +KTKLC L+Q+G+C+R +CSFAHG+ ++RR   +  A        D     F   +  + 
Sbjct: 11  YKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRF 70

Query: 68  NQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLFH 127
           + + R                  ++PG                            S    
Sbjct: 71  SPRRR------------------HSPGR--------------------------ESRGHR 130

Query: 128 VMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLRI 187
            + DR         S +    P RK               +R +K   D  T+ + +L +
Sbjct: 131 PLYDRRPSSRERDSSYSRS--PSRK-------------SERRHEKKTDDGETNSSRSLSL 190

Query: 188 TDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSRI 247
           +D ++E+ ++   S   ++  E QL +++ D+E     + Q EV LDEKI EV  ++S++
Sbjct: 191 SDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKV 250

Query: 248 QELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKIG 307
            +LE QL  E++EC R+ SK+KKF+KAH R+   Q+E+KR      +LGD L SD+ K G
Sbjct: 251 NDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRG 310

Query: 308 ANEEDSSVNIVSDGEDPRYHAAGPL---HHLHKDTSASKRKLHVDQDIAGNSK--RADLH 367
           ANEE SSVN   +   P   A       +   ++  A K++   D D    S   R+D+ 
Sbjct: 311 ANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVT 370

Query: 368 KGSKEAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTAD 427
              K + G             KS+Y K +   +E              + K   ++ T +
Sbjct: 371 DFDKTSKG---------TEATKSLYLKKKLWEDE--------------KSKLGANIFT-E 426

Query: 428 KVRSLDAGVVVPLTSMAAHAVNE-EVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSP 487
           KV+      V+P T MAAHA+++    IELE  +E  D            +P +P  P P
Sbjct: 431 KVKGSPVRHVLPSTGMAAHAIDDLNEAIELEDRHESIDALLENDADDKTRSPAIPLQPPP 426

Query: 488 IHEINHSRYEGEDQNIDVE 489
           + +  + +YEG+D+ +DVE
Sbjct: 491 VVQNAYEQYEGDDEEVDVE 426

[Close]

BLAST of Carg19180 vs. ExPASy TrEMBL
Match: A0A6J1GKX5 (zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454900 PE=4 SV=1)

HSP 1 Score: 692.6 bits (1786), Expect = 1.2e-195
Identity = 391/506 (77.27%), Postives = 402/506 (79.45%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P + S   
Sbjct: 61  LDNRH------------SPLQERDSRGRHG----------------------PQYSSSW- 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPGYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP SPIHEIN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPQSPIHEIN 434

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLDDA
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 434

[Close]

BLAST of Carg19180 vs. ExPASy TrEMBL
Match: A0A6J1GKR3 (zinc finger CCCH domain-containing protein 13-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454900 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 3.6e-195
Identity = 391/506 (77.27%), Postives = 402/506 (79.45%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P   S  +
Sbjct: 61  LDNRH------------SPLQERDSRGRHG----------------------PREYSSSW 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR
Sbjct: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPGYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP SPIHEIN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPQSPIHEIN 435

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLDDA
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 435

[Close]

BLAST of Carg19180 vs. ExPASy TrEMBL
Match: A0A6J1HZ04 (zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468193 PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 8.2e-192
Identity = 383/506 (75.69%), Postives = 399/506 (78.85%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P + S   
Sbjct: 61  LDSRH------------SPLQERDSRGRHG----------------------PQYSSSW- 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           I DRSEERDREGKISSSSRDTLE QLNKMQADIEMAEHHRHQAEVYL+EKIQEVDSLTSR
Sbjct: 181 IIDRSEERDREGKISSSSRDTLEEQLNKMQADIEMAEHHRHQAEVYLEEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIA NSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPSYHAAGPLHHLHKDTSASKRKLHVDQDIAANSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKS+YSKIEA+RNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSVYSKIEAIRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGS PLLPPPPSPIH+IN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSVPLLPPPPSPIHKIN 434

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLD+A
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDNA 434

[Close]

BLAST of Carg19180 vs. ExPASy TrEMBL
Match: A0A6J1I1K5 (zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468193 PE=4 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 2.4e-191
Identity = 383/506 (75.69%), Postives = 399/506 (78.85%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASS   +         + H+
Sbjct: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSGRQEYREND----LRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P   S  +
Sbjct: 61  LDSRH------------SPLQERDSRGRHG----------------------PREYSSSW 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
              ++RN                               +DHKRRKKDHGDSRTDYAGNLR
Sbjct: 121 --SLERN-------------------------------SDHKRRKKDHGDSRTDYAGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           I DRSEERDREGKISSSSRDTLE QLNKMQADIEMAEHHRHQAEVYL+EKIQEVDSLTSR
Sbjct: 181 IIDRSEERDREGKISSSSRDTLEEQLNKMQADIEMAEHHRHQAEVYLEEKIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKRSQFRLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSSVNIVSDGEDP YHAAGPLHHLHKDTSASKRKLHVDQDIA NSKRADLHKGSK
Sbjct: 301 GANEEDSSVNIVSDGEDPSYHAAGPLHHLHKDTSASKRKLHVDQDIAANSKRADLHKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRRISRWNAHPAKS+YSKIEA+RNENNDYIPKANESRQKRGKASNSVSTADKVRS
Sbjct: 361 EAVGRLRRISRWNAHPAKSVYSKIEAIRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGS PLLPPPPSPIH+IN
Sbjct: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSVPLLPPPPSPIHKIN 435

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYEGEDQNIDVEVVDDESAGLD+A
Sbjct: 481 HSRYEGEDQNIDVEVVDDESAGLDNA 435

[Close]

BLAST of Carg19180 vs. ExPASy TrEMBL
Match: A0A6J1JI85 (zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486025 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 8.9e-154
Identity = 322/506 (63.64%), Postives = 367/506 (72.53%), Query Frame = 0


Query: 1   MMIGRKLFKTKLCVLYQKGHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 60
           M++G KLFKTKLCVLYQKG CSRPSCSFAHG AELRRFAG    A+D   E     + H+
Sbjct: 1   MVVGSKLFKTKLCVLYQKGRCSRPSCSFAHGTAELRRFAG----AHDGRREYRGNDLRHK 60

Query: 61  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 120
           L+ +             + L   +    HG                      P   S  +
Sbjct: 61  LDSRH------------SPLQERDSRGRHG----------------------PRDYSSSW 120

Query: 121 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 180
                 ++E+                            +D KRRKK++GDSR DY+GNLR
Sbjct: 121 ------SLERQ---------------------------SDRKRRKKEYGDSRNDYSGNLR 180

Query: 181 ITDRSEERDREGKISSSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTSR 240
           I+DRSEERDREGKISS+SRDTLEGQLNKMQADIEMAEHH+HQAEVYLDE+IQEVDSLTSR
Sbjct: 181 ISDRSEERDREGKISSASRDTLEGQLNKMQADIEMAEHHKHQAEVYLDERIQEVDSLTSR 240

Query: 241 IQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNKI 300
           IQELESQLY ERE+ RRIKSKIKKFVKAHNRYS IQDELKR      QLGDQLGSDVNKI
Sbjct: 241 IQELESQLYKEREDSRRIKSKIKKFVKAHNRYSRIQDELKRSQARLQQLGDQLGSDVNKI 300

Query: 301 GANEEDSSVNIVSDGEDPRYHAAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADLHKGSK 360
           GANEEDSS+NIVSDGEDP +HA  PLH L KD SASK+K HV QDIA NSKRADL+KGSK
Sbjct: 301 GANEEDSSINIVSDGEDPGFHAVSPLHDLQKDNSASKKK-HVVQDIAENSKRADLNKGSK 360

Query: 361 EAVGRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKANESRQKRGKASNSVSTADKVRS 420
           EAVGRLRR SRWNAHP++S+YSKIEAV NE ND IP ANES+QKRG+ S +VS+ADKVR 
Sbjct: 361 EAVGRLRRFSRWNAHPSQSVYSKIEAVGNEVNDLIPTANESKQKRGRTSTTVSSADKVRG 420

Query: 421 LDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPPPSPIHEIN 480
           L++GVVVPLTSMAAHAV+EEVDIELE+NN+V++ RE+TKEA+ GS P  PPPP PI EIN
Sbjct: 421 LESGVVVPLTSMAAHAVDEEVDIELEINNKVNETRENTKEASFGSLPFPPPPPPPIREIN 434

Query: 481 HSRYEGEDQNIDVEVVDDESAGLDDA 501
           HSRYE EDQN+DV  +DDE A LD+A
Sbjct: 481 HSRYESEDQNVDVVTLDDERARLDNA 434

[Close]

BLAST of Carg19180 vs. TAIR 10
Match: AT3G21810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 147.1 bits (370), Expect = 3.7e-35
Identity = 152/514 (29.57%), Postives = 236/514 (45.91%), Query Frame = 0


Query: 2   MIGRKLFKTKLCVLYQK-GHCSRPSCSFAHGNAELRRFAGASSAAYDISLEMFMALVLHQ 61
           M G  ++KTKLC+L+ K G CSRP+C+FAHGNAELRR   +S      +++  +    H 
Sbjct: 1   MSGSSMYKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHN 60

Query: 62  LNQKERFFIGLCLLSMPNGLPVGEYNPGHGFFIIFSLFLLIFWNWHGGTTTVPYFVSHLF 121
           ++   R  +G             +++P                                 
Sbjct: 61  MDSDLRDRLG------------RQFSPER------------------------------- 120

Query: 122 HVMVDRNIEKMIYGISLTAGTLPCRKGIPEGDMDLVVVNDHKRRKKDHGDSRTDYAGNLR 181
              +DR            +G    R    +  M      D   R+    D R DYAG L+
Sbjct: 121 RPSLDR------------SGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLK 180

Query: 182 ITDRSEERDREGKIS-SSSRDTLEGQLNKMQADIEMAEHHRHQAEVYLDEKIQEVDSLTS 241
           + +R E+R  +G+       + LE QL  ++ D++M    + + E  ++ K  EVD LTS
Sbjct: 181 VGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTS 240

Query: 242 RIQELESQLYNEREECRRIKSKIKKFVKAHNRYSGIQDELKR------QLGDQLGSDVNK 301
           RIQELE+QL  E++ECRRI S  KKFVK +NR+   QD+LKR      +LG+QL + +  
Sbjct: 241 RIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLAG 300

Query: 302 IGANEEDSSVNIVSDGEDPRYH---AAGPLHHLHKDTSASKRKLHVDQDIAGNSKRADL- 361
              N  D  ++IVSD E    +   A  P + L   +S S++K +VDQ          L 
Sbjct: 301 SEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTKEPVEDGLI 360

Query: 362 HKGSKEAV-GRLRRISRWNAHPAKSMYSKIEAVRNENNDYIPKAN--ESRQKRGKASNSV 421
            +G +E V    +R   WN   +KS YS+ E+    + D I +++  E   KR + S   
Sbjct: 361 GRGEEEKVENEKKRPPCWNMLSSKS-YSEEESGAWNDEDTINRSSSKEDNWKRRRFSIGT 420

Query: 422 STADKVRSLDAGVVVPLTSMAAHAVNEEVDIELEVNNEVSDRRESTKEAASGSAPLLPPP 481
           S  DK        V+  TSMAA              ++V++  E   EAA+GS  +  PP
Sbjct: 421 SATDK--------VILSTSMAAREF-----------DDVAESEEENPEAANGSPLISLPP 436

Query: 482 PSPIHEINHSRYEGEDQNIDVEVVDDESAGLDDA 501
           P P  + +  R   ++ +++ +V++ + A  DD+
Sbjct: 481 PPPFRDAHVQR---DEDDVNGDVMEQKKAYDDDS 436

The following BLAST results are available for this feature:

BLAST of Carg19180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011918.1	1.4e-281	100.00	Zinc finger CCCH domain-containing protein 13 [Cucurbita argyrosperma subsp. arg...	[more]
KAG6572306.1	8.7e-196	77.47	Zinc finger CCCH domain-containing protein 13, partial [Cucurbita argyrosperma s...	[more]
XP_022952135.1	2.5e-195	77.27	zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita moschat...	[more]
XP_022952134.1	7.4e-195	77.27	zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita moschat...	[more]
XP_022969100.1	1.7e-191	75.69	zinc finger CCCH domain-containing protein 40-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg19180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XW7	5.2e-34	29.57	Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6H7U2	4.9e-32	27.45	Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg19180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKX5	1.2e-195	77.27	zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita mosch...	[more]
A0A6J1GKR3	3.6e-195	77.27	zinc finger CCCH domain-containing protein 13-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1HZ04	8.2e-192	75.69	zinc finger CCCH domain-containing protein 40-like isoform X2 OS=Cucurbita maxim...	[more]
A0A6J1I1K5	2.4e-191	75.69	zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1JI85	8.9e-154	63.64	zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Carg19180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21810.1	3.7e-35	29.57	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 199..219
None	No IPR available	COILS	Coil	Coil	coord: 227..261
None	No IPR available	GENE3D	4.10.1000.10		coord: 2..37 e-value: 9.1E-8 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 388..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..204
None	No IPR available	PANTHER	PTHR38160	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	coord: 160..494 coord: 2..41
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 7..33 score: 12.192311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19180-RA	Carg19180-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding