Carg19174 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTAATCCATAGAATTCTTGCGATCGCATTGATGGCTCATGCTATAGTTCCTCAGGATCTCATGCATTTTTGAAATGGAGAGAAAAATAGATATCTAGCACATTTTTTCTACATTGACTGTATGAGTCATAACTGGTATATTGTGAGGAAGACTGATAGAAGTGCAAGGAATCACAGAATTGCTAAGCCAAATCCAATCACCGTGCCCATCTCATGGTAAAACATCACATGGCAAGGGTCAGGATTGAAAGTTAAGGTGTCCTTTGAGACTTCATATTCCTTATCCGACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTAAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGTAAGCTCATCATGGATTTTATTTTATAATCACAGAAACCAATCAGTTTAATCTCAGTTTACTCTTCTAAAACATTTACATTTTGTTTCTCTTCCTCTTAAGTTTTAGTTTACATGGGTTACTTGTTTTTATGTGGCTCTTCAAATTCTGAACCCCAAGATGTTGAATGCAAACAACCAGCAATTGTCCTTCTTTTGAAATCCAGATGAATGGTCCCTGATCGAAAAAGGGTTAACGTAGTTGTGTCATATATGAGTATTTAAATTGATTTCCTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGATAGTTCTTTTTTTAACCTCCTTCCTCTTCTGGATAATGTTTTGGTTCACTATCATCATTACTTTCCCAGTTCCACCACATTTTTATCAGTTGGGTAAATGGCACTAACTCCAAAAAGATACCAAATAAGGTGAAAGATGGATGACAAGATTCTTGTTTAGATTTAAAGAGCTTTTGTTGTATTTTTTAAGTTTTAGAGAATTGTCTTTGAACTAGTGGCTATTATGGTATTGATGACCACAAAGATATTAGATAGGTTAATGAAAGTTGCATATAAAGCTGGTTTGTTCCTGGATATTTTTTGTGTTTAGATTTGCGTGTTAGAGTCATTCAAGTAGTCTTAATTACGAGTTTTCTTTACTCTTGATCATCAAGGTAATCTGTTTCTAAACTTTCCCTTGGGTTGATTCCTTGTCG TTTTAATCCATAGAATTCTTGCGATCGCATTGATGGCTCATGCTATAGTTCCTCAGGATCTCATGCATTTTTGAAATGGAGAGAAAAATAGATATCTAGCACATTTTTTCTACATTGACTGTATGAGTCATAACTGGTATATTGTGAGGAAGACTGATAGAAGTGCAAGGAATCACAGAATTGCTAAGCCAAATCCAATCACCGTGCCCATCTCATGGTAAAACATCACATGGCAAGGGTCAGGATTGAAAGTTAAGGTGTCCTTTGAGACTTCATATTCCTTATCCGACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTAAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGATAGTTCTTTTTTTAACCTCCTTCCTCTTCTGGATAATGTTTTGGTTCACTATCATCATTACTTTCCCAGTTCCACCACATTTTTATCAGTTGGGTAAATGGCACTAACTCCAAAAAGATACCAAATAAGGTGAAAGATGGATGACAAGATTCTTGTTTAGATTTAAAGAGCTTTTGTTGTATTTTTTAAGTTTTAGAGAATTGTCTTTGAACTAGTGGCTATTATGGTATTGATGACCACAAAGATATTAGATAGGTTAATGAAAGTTGCATATAAAGCTGGTTTGTTCCTGGATATTTTTTGTGTTTAGATTTGCGTGTTAGAGTCATTCAAGTAGTCTTAATTACGAGTTTTCTTTACTCTTGATCATCAAGGTAATCTGTTTCTAAACTTTCCCTTGGGTTGATTCCTTGTCG ATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCGGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAGGGAGTGAAATATGCTGATGAAGTTGTTAGAAGAAAGGAGGGGAAGGCAGGGAAGAAGAAGTGA MHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK Homology
BLAST of Carg19174 vs. NCBI nr
Match: KAG7011912.1 (50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 236.9 bits (603), Expect = 8.9e-59 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 236.9 bits (603), Expect = 8.9e-59 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. NCBI nr
Match: XP_023554603.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2) HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53 Identity = 101/117 (86.32%), Postives = 110/117 (94.02%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 2.6e-53 Identity = 100/117 (85.47%), Postives = 111/117 (94.87%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy Swiss-Prot
Match: Q18CH5 (50S ribosomal protein L6 OS=Clostridioides difficile (strain 630) OX=272563 GN=rplF PE=3 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-39 Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy Swiss-Prot
Match: A6TWG7 (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=rplF PE=3 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 8.2e-39 Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy Swiss-Prot
Match: A0PXW1 (50S ribosomal protein L6 OS=Clostridium novyi (strain NT) OX=386415 GN=rplF PE=3 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 6.9e-38 Identity = 74/115 (64.35%), Postives = 92/115 (80.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 5.6e-59 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 9.6e-59 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 9.6e-59 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58 Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Carg19174 vs. ExPASy TrEMBL
Match: A0A6J1HVU0 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468304 PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.8e-58 Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0
BLAST of Carg19174 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family ) HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54 Identity = 100/117 (85.47%), Postives = 111/117 (94.87%), Query Frame = 0
BLAST of Carg19174 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein ) HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20 Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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